prot_D-mesarthrocarpus_Contig959.3.2 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig959.3.2
Unique Nameprot_D-mesarthrocarpus_Contig959.3.2
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length293
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: D7G689_ECTSI (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G689_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 1.170e-89
Identity = 151/172 (87.79%), Postives = 158/172 (91.86%), Query Frame = 0
Query:   60 SMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPA-GIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDKGKATPGGPGVGKAAGRGVPTAPVTGAPRGLAGPVQGIGGPASSMMQPQAVAASAQAQAYGRGGP--RGMPG-MPSG 227
            SMSRSSKMLQYVNYRMR+TILD RVLVGTLMAFDRH+NLVLGDCEEYR+FKPKKG + A GIHEEREEKRVLGLVLLRGENV SLTVEGPPPA+D GKATPGGPGVG+AAGRGVPT PV GAPRGLAGPV+GIGGPASSMMQPQAVAASAQAQAYGRG P  RG PG MP G
Sbjct:    2 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAAAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKATPGGPGVGRAAGRGVPTMPVQGAPRGLAGPVRGIGGPASSMMQPQAVAASAQAQAYGRGAPMGRGPPGQMPPG 173          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: A0A836CGG1_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG1_9STRA)

HSP 1 Score: 210 bits (535), Expect = 8.110e-64
Identity = 112/149 (75.17%), Postives = 129/149 (86.58%), Query Frame = 0
Query:   60 SMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDKGKATPGGPGVGKAAGRGVPTAPVTGA-PRGLAGPVQGIGGPASSMMQPQAVAAS 207
            +M+RSSKML YVNYRMRVTI+DSRVL+GT MAFDRHMN+VLGDCEE+RK K KKGQ  A  HEEREEKR LGLVL+RGENV+SLTVEGPPP ++ G A PGGPGVG+AAGRG+P AP  GA P GLAGPV+G+GGPA+S+MQPQA + S
Sbjct:    2 AMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQG-AHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVS 149          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: A0A4D9CW50_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW50_9STRA)

HSP 1 Score: 204 bits (518), Expect = 6.580e-62
Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 0
Query:   60 SMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPAG---IHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDKGKATPGGPGVGKAAGRGVPT-APVTGAPRGLAGPVQGIGGPASSMMQPQAV 204
            SMS+SSKML Y+NYRMRVTI D+R LVGT MAFDRHMNLVLGDCEEYRK K KKG   +G   I EE+EEKR+LGLVLLRGENV+SLTVEGPPP D++ KATPGGPG+G+AAGRG+   APV GAP GLAGPV+G+GGPA S+M P AV
Sbjct:    2 SMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPNAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAV 150          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: M4BFA0_HYAAE (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFA0_HYAAE)

HSP 1 Score: 192 bits (489), Expect = 2.630e-57
Identity = 111/167 (66.47%), Postives = 128/167 (76.65%), Query Frame = 0
Query:   61 MSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDKGKATPGGPGVGKAAGRGVPTAPVTGA--PRGLAGPVQGIGGPASSMMQPQAVAASAQAQAYGRGGPRGMPGMP 225
            MS+SSKML Y+NYRM+VT+LDSRVLVG  MAFD+HMNLVLGDCEE+R  + K     + + EER EKR LGLVLLRGE+V+SLTVEGPP A +     P GPGV +AAGRG+PTAP+ GA  P GL  P++GIGGP   MMQP  VAA AQ QAYGRG  RGMPGMP
Sbjct:    3 MSKSSKMLNYINYRMKVTLLDSRVLVGYFMAFDKHMNLVLGDCEEFRTLRAK---VKSTVSEERVEKRHLGLVLLRGESVVSLTVEGPPLAKENETVGPNGPGVARAAGRGIPTAPMGGASLPMGLMAPMRGIGGPPPGMMQPGQVAAMAQPQAYGRG--RGMPGMP 164          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: A0A822XXF9_NELNU (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XXF9_NELNU)

HSP 1 Score: 185 bits (469), Expect = 1.450e-54
Identity = 100/148 (67.57%), Postives = 117/148 (79.05%), Query Frame = 0
Query:   60 SMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDK-----GKATPGGPGVGKAAGRGVPTAPVTGAPRGLAGPVQGIGGPASSMMQPQ 202
            SMS+SSKMLQY+NYRMRVTI D R LVG  MAFDRHMNLVLGDCEE+RK  P KG++    +EERE++R LGLVLLRGE V+S+TVEGPPP D+      G A   GPG+G+AAGRG+PTAP+  A  GLAGPV+G+GGPA  MMQPQ
Sbjct:    2 SMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK----NEEREDRRTLGLVLLRGEEVVSMTVEGPPPPDENRAKASGAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 145          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: W7TUE2_9STRA (Small nuclear ribonucleoprotein associated protein b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUE2_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.580e-54
Identity = 104/152 (68.42%), Postives = 119/152 (78.29%), Query Frame = 0
Query:   44 HLPPSPYAGCLCVRLQSMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQ---PAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDKGKATPGGPGVGKAAGRGVPT-APVTGAPRGLAGPVQGI 191
            H   +  A     +  SMS+SSKML Y+NYRMRVTI D+R LVGT MAFDRHMNLVLGDCEEYRK K KKG     P  I EE+EEKR+LGLVLLRGENV+SLTVEGPPP D++ KATPGGPG+G+AAGRG+   APV GAP GLAGPV+G+
Sbjct:   20 HFKRASQAPSYRFQTMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGV 171          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: A0A6V3BNK5_HETAK (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BNK5_HETAK)

HSP 1 Score: 184 bits (466), Expect = 3.100e-54
Identity = 109/166 (65.66%), Postives = 122/166 (73.49%), Query Frame = 0
Query:   60 SMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDKGKATPGGPGVGKAAGRGVPTAPVTGAPRGLAGPVQGIGGPASSMMQPQAVAASAQAQAYGRGGPRGMPGMP 225
            SMSRSSKMLQY+NYRMRVT+ D R+LVGT MAFDRHMNL LGD EEYRK K KKGQ   G+ E+REEKR LGLVL+RGENV+SL+VEGPPP +D  KATPGGPG G+AAGRG   AP  GAP GLAGPV+              VAA+A +Q Y R  P G  GMP
Sbjct:    2 SMSRSSKMLQYINYRMRVTLQDGRMLVGTFMAFDRHMNLCLGDTEEYRKLKNKKGQ---GVVEDREEKRALGLVLVRGENVVSLSVEGPPPPEDDAKATPGGPGAGRAAGRGTVQAPAAGAPVGLAGPVRXXXXXXXXXXXXX-VAAAAPSQTYARPPPPG--GMP 161          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: UPI001C4E8A0F (small nuclear ribonucleoprotein-associated proteins B and B'-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E8A0F)

HSP 1 Score: 186 bits (472), Expect = 4.720e-54
Identity = 101/148 (68.24%), Postives = 119/148 (80.41%), Query Frame = 0
Query:   60 SMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDK-----GKATPGGPGVGKAAGRGVPTAPVTGAPRGLAGPVQGIGGPASSMMQPQ 202
            SMS+SSKMLQY+NYRMRVTI D R LVG  MAFDRHMNLVLGDCEE+RK  P KG++    +EEREE+R LGLVLLRGE V+S+TVEGPPP ++      G A   GPG+G+AAGRG+PTAP+  A  GLAGPV+G+GGPAS+MMQPQ
Sbjct:    2 SMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK----NEEREERRTLGLVLLRGEEVVSMTVEGPPPPEESRAKAVGAAAMAGPGLGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPASNMMQPQ 145          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: A0A485LEA3_9STRA (Small nuclear ribonucleoprotein-associated protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485LEA3_9STRA)

HSP 1 Score: 184 bits (467), Expect = 4.750e-54
Identity = 104/163 (63.80%), Postives = 123/163 (75.46%), Query Frame = 0
Query:   61 MSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDKGKATPGGPGVGKAAGRGVPTAPVTGAPRGLAGPVQGIGGPASSMMQPQAVAASAQAQAYGRG-GPRGMP 222
            M++SSKML Y+NYRM+VT+ D R LVGT MAFD+HMNLVLGDCEE+R  K K     A + EER +KR+LGLVLLRGENV+SLTVE PPPA +       GPG G+AAGRG+P AP+ G P GLA P++G+GGPA  MMQP  VAA A AQ+YGRG  PRG P
Sbjct:    3 MNKSSKMLNYINYRMKVTLADGRTLVGTFMAFDKHMNLVLGDCEEFRTLKNKLKGAAASVKEERIQKRMLGLVLLRGENVVSLTVESPPPAHETEGFGNMGPGFGRAAGRGLPAAPL-GVPMGLAAPMRGVGGPAHGMMQPGQVAAQAPAQSYGRGMPPRGPP 164          
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Match: A0A1U8Q6I9_NELNU (Small nuclear ribonucleoprotein-associated protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8Q6I9_NELNU)

HSP 1 Score: 186 bits (471), Expect = 6.670e-54
Identity = 101/148 (68.24%), Postives = 117/148 (79.05%), Query Frame = 0
Query:   60 SMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVLGDCEEYRKFKPKKGQQPAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPPADDK-----GKATPGGPGVGKAAGRGVPTAPVTGAPRGLAGPVQGIGGPASSMMQPQ 202
            SMS+SSKMLQY+NYRMRVTI D R LVG  MAFDRHMNLVLGDCEE+RK  P KG++    +EEREE+R LGLVLLRGE V+S+TVEGPPP D+      G A   GPG+G+AAGRG+PTAP+  A  GLAGPV+G+GGPA  MMQPQ
Sbjct:    2 SMSKSSKMLQYINYRMRVTIHDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK----NEEREERRTLGLVLLRGEEVVSMTVEGPPPPDENRAKAVGAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 145          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig959.3.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G689_ECTSI1.170e-8987.79Small nuclear ribonucleoprotein-associated protein... [more]
A0A836CGG1_9STRA8.110e-6475.17Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9CW50_9STRA6.580e-6274.50Small nuclear ribonucleoprotein-associated protein... [more]
M4BFA0_HYAAE2.630e-5766.47Small nuclear ribonucleoprotein-associated protein... [more]
A0A822XXF9_NELNU1.450e-5467.57Small nuclear ribonucleoprotein-associated protein... [more]
W7TUE2_9STRA2.580e-5468.42Small nuclear ribonucleoprotein associated protein... [more]
A0A6V3BNK5_HETAK3.100e-5465.66Small nuclear ribonucleoprotein-associated protein... [more]
UPI001C4E8A0F4.720e-5468.24small nuclear ribonucleoprotein-associated protein... [more]
A0A485LEA3_9STRA4.750e-5463.80Small nuclear ribonucleoprotein-associated protein... [more]
A0A1U8Q6I9_NELNU6.670e-5468.24Small nuclear ribonucleoprotein-associated protein... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 65..145
e-value: 4.5E-22
score: 89.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 67..144
e-value: 3.1E-19
score: 68.4
NoneNo IPR availableGENE3D2.30.30.100coord: 59..154
e-value: 6.0E-31
score: 108.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..292
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 60..286
NoneNo IPR availablePANTHERPTHR10701:SF18SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEINcoord: 60..286
NoneNo IPR availableCDDcd01717Sm_Bcoord: 63..146
e-value: 1.97919E-48
score: 154.246
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 62..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig959contigD-mesarthrocarpus_Contig959:3741..5421 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig959.3.2mRNA_D-mesarthrocarpus_Contig959.3.2Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig959 3501..6555 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig959.3.2 ID=prot_D-mesarthrocarpus_Contig959.3.2|Name=mRNA_D-mesarthrocarpus_Contig959.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=293bp
MVIDYAQKWVHPAMPTYSDHRLPFGRDCVDALFFTRILLAPVAHLPPSPY
AGCLCVRLQSMSRSSKMLQYVNYRMRVTILDSRVLVGTLMAFDRHMNLVL
GDCEEYRKFKPKKGQQPAGIHEEREEKRVLGLVLLRGENVLSLTVEGPPP
ADDKGKATPGGPGVGKAAGRGVPTAPVTGAPRGLAGPVQGIGGPASSMMQ
PQAVAASAQAQAYGRGGPRGMPGMPSGRGVPMGYGPPPGGMGMPRPPMGY
PQGMQGMPPQGMGRGGPPPPSVSGPPPMGYQPRPGMPPPRSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf