prot_D-mesarthrocarpus_Contig9407.1.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig9407.1.1
Unique Nameprot_D-mesarthrocarpus_Contig9407.1.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length37
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.620e-13
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKR 31
            DCGS+NLIKAKDPIQCRQCGYRIMYK RTKR
Sbjct:   31 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 61          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: A0A836C8S5_9STRA (DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.620e-12
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKR 31
            DCG+ N IKAKDPIQCR CGYRIMYKMRTKR
Sbjct:   21 DCGTTNEIKAKDPIQCRSCGYRIMYKMRTKR 51          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: A0A443S3J3_9ACAR (DNA-directed RNA polymerases I: II: and III subunit RPABC4-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S3J3_9ACAR)

HSP 1 Score: 60.1 bits (144), Expect = 4.050e-11
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCMF 34
            +C  EN IK +DPI+CR+CGYRIMYK RTKRCMF
Sbjct:   22 ECHHENEIKPRDPIRCRECGYRIMYKKRTKRCMF 55          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: R0L3R7_ANAPL (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0L3R7_ANAPL)

HSP 1 Score: 59.3 bits (142), Expect = 4.720e-11
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCMFRQ 36
            +C +EN IKA+DPI+CR+CGYRIMYK RTKRC+  Q
Sbjct:    4 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCILLQ 39          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: A0A7K7KVE5_9AVES (RPAB4 protein (Fragment) n=11 Tax=Neognathae TaxID=8825 RepID=A0A7K7KVE5_9AVES)

HSP 1 Score: 59.7 bits (143), Expect = 4.990e-11
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCMFRQK 37
            +C +EN IKA+DPI+CR+CGYRIMYK RTKRC+  Q+
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCILLQR 57          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: A0A8C5SZC9_LATLA (RNA polymerase II, I and III subunit K n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SZC9_LATLA)

HSP 1 Score: 60.1 bits (144), Expect = 6.440e-11
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCM 33
            DC  EN IKA+DPI+CR+CGYRIMYK RTKRC+
Sbjct:   21 DCHKENEIKARDPIRCRECGYRIMYKKRTKRCI 53          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: A0A7K9HX18_9AVES (RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K9HX18_9AVES)

HSP 1 Score: 58.9 bits (141), Expect = 9.850e-11
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCM 33
            +C +EN IKA+DPI+CR+CGYRIMYK RTKRC+
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCI 53          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: A0A7L4JXA9_9AVES (RPAB4 protein (Fragment) n=11 Tax=Archelosauria TaxID=1329799 RepID=A0A7L4JXA9_9AVES)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-10
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCM 33
            +C +EN IKA+DPI+CR+CGYRIMYK RTKRC+
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCI 53          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: A0A7L4G7R7_9COLU (RPAB4 protein (Fragment) n=16 Tax=Neognathae TaxID=8825 RepID=A0A7L4G7R7_9COLU)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-10
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCM 33
            +C +EN IKA+DPI+CR+CGYRIMYK RTKRC+
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCI 53          
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Match: A0A7L2U2V8_BALRX (RPAB4 protein (Fragment) n=16 Tax=Aves TaxID=8782 RepID=A0A7L2U2V8_BALRX)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-10
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0
Query:    1 DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCM 33
            +C +EN IKA+DPI+CR+CGYRIMYK RTKRC+
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCI 53          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9407.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK5_ECTSI1.620e-1393.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8S5_9STRA8.620e-1287.10DNA-directed RNA polymerases I, II, and III 7.0 kD... [more]
A0A443S3J3_9ACAR4.050e-1173.53DNA-directed RNA polymerases I: II: and III subuni... [more]
R0L3R7_ANAPL4.720e-1169.44DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7K7KVE5_9AVES4.990e-1167.57RPAB4 protein (Fragment) n=11 Tax=Neognathae TaxID... [more]
A0A8C5SZC9_LATLA6.440e-1175.76RNA polymerase II, I and III subunit K n=1 Tax=Lat... [more]
A0A7K9HX18_9AVES9.850e-1172.73RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]
A0A7L4JXA9_9AVES1.010e-1072.73RPAB4 protein (Fragment) n=11 Tax=Archelosauria Ta... [more]
A0A7L4G7R7_9COLU1.010e-1072.73RPAB4 protein (Fragment) n=16 Tax=Neognathae TaxID... [more]
A0A7L2U2V8_BALRX1.010e-1072.73RPAB4 protein (Fragment) n=16 Tax=Aves TaxID=8782 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4SMARTSM00659rpolcxc3coord: 1..37
e-value: 1.6E-6
score: 37.7
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4PFAMPF03604DNA_RNApol_7kDcoord: 1..28
e-value: 5.2E-14
score: 51.7
NoneNo IPR availableGENE3D2.20.28.30RNA polymerase ii, chain Lcoord: 1..36
e-value: 9.2E-16
score: 59.0
IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4PANTHERPTHR12056DNA-DIRECTED RNA POLYMERASES I, II, AND IIIcoord: 1..33
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 1..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9407contigD-mesarthrocarpus_Contig9407:2709..2819 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9407.1.1mRNA_D-mesarthrocarpus_Contig9407.1.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig9407 2709..2819 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig9407.1.1 ID=prot_D-mesarthrocarpus_Contig9407.1.1|Name=mRNA_D-mesarthrocarpus_Contig9407.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=37bp
DCGSENLIKAKDPIQCRQCGYRIMYKMRTKRCMFRQK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006591RNAP_P/RPABC4
IPR039747RPABC4
IPR029040RPABC4/Spt4