prot_D-mesarthrocarpus_Contig94.7.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig94.7.1
Unique Nameprot_D-mesarthrocarpus_Contig94.7.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length161
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: D7G8J7_ECTSI (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J7_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 4.070e-42
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKERRNMGGR 80
            MLVELKNGDTYNGRL++CDSWMNIKL+DVI+TSRD DKFVK+ EVYVRGNSIKY+TIP+EV+DMVQEEDLSKE+R MGGR
Sbjct:   15 MLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGR 94          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: A0A836C9X5_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.070e-36
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKERRNMGG 79
            MLVELKNGDTYNGRL+ CD+WMNIKLRDVIWTSRDGD+F KL EVYVRG SIKY+TIPDEV++MV EE+  KE+R   G
Sbjct:   15 MLVELKNGDTYNGRLDMCDNWMNIKLRDVIWTSRDGDRFWKLPEVYVRGTSIKYMTIPDEVLEMVVEEEEGKEKRAAAG 93          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: A0A7S2E5C6_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5C6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.800e-34
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKERRNM--GGR 80
            MLVELKNGDTYNGRL +CDSWMNI LR+VI TSRDGD+F KL E Y+RGNSIKYL IP++V+D+VQEEDL +E RN   GGR
Sbjct:   29 MLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQETRNASRGGR 110          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: A0A7S2FS84_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS84_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.910e-34
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKERRN 76
            MLVELKNGDTYNGRL +CDSWMNI LR+VI TSRDGD+F KL E Y+RGNSIKYL IP++V+D+VQEEDL +E RN
Sbjct:   28 MLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQESRN 103          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: W7TE23_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.160e-33
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKER 74
            MLVELKNGDTYNGRL SCD+WMNI LRDVI TSRDGD+F K+ E YVRGNSIKYL +P+EV+DMV EEDL +ER
Sbjct:   15 MLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: A0A7S2UV99_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.160e-33
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKE----RRNMGGR 80
            MLVELKNGDTYNGRL SCDSWMNI LR+VI TSRDGD+F +L E Y+RGNSIKYL IPDEV+DMV EE + KE     R  GGR
Sbjct:   15 MLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAMQKEVRMATRGRGGR 98          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: A0A6G0XI18_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI18_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.290e-32
Identity = 57/81 (70.37%), Postives = 70/81 (86.42%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKERRN-MGGR 80
            MLVELKNGDTYNG+L +CD+WMNI L++VI TS+DGD+F KL E Y+RGN+IKY+ IPDE++DMV EEDLSK+ RN M GR
Sbjct:    1 MLVELKNGDTYNGQLVNCDTWMNINLKEVICTSKDGDRFWKLPECYIRGNTIKYIRIPDEILDMVVEEDLSKKDRNAMRGR 81          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: C3ZIA6_BRAFL (U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZIA6_BRAFL)

HSP 1 Score: 119 bits (298), Expect = 1.020e-31
Identity = 54/79 (68.35%), Postives = 68/79 (86.08%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKERRNMGG 79
            MLVELKNG+TYNG LE+CD+WMNIKLRDVI TSRDGD+F ++ E Y+RG++IKYL IPDEV+DMV+E+ +SK+R    G
Sbjct:   15 MLVELKNGETYNGHLEACDNWMNIKLRDVICTSRDGDRFWRMPECYIRGSTIKYLRIPDEVIDMVKEDIVSKQRTKQQG 93          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: A0A485KDN7_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A485KDN7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.340e-31
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKERRN 76
            MLVELKNGDTYNG L +CD+WMNI L++VI TS+DGD+F KL E Y+RGN+IKY+ IPDE++DMV EEDL+K+ RN
Sbjct:    1 MLVELKNGDTYNGHLVNCDTWMNINLKEVICTSKDGDRFWKLPECYIRGNTIKYIRIPDEILDMVVEEDLTKKDRN 76          
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Match: F0Y7P1_AURAN (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7P1_AURAN)

HSP 1 Score: 118 bits (295), Expect = 4.220e-31
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 0
Query:    1 MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGNSIKYLTIPDEVMDMVQEEDLSKERRNMGGR 80
            ML+ELKNGDTYNGRL S D+WMN+ L +VI TSRDGD+F KL E Y+RGNSIKYL IPDE++D+VQEE++S +    GG+
Sbjct:   15 MLIELKNGDTYNGRLVSADTWMNVNLEEVICTSRDGDRFWKLKECYIRGNSIKYLRIPDEIIDLVQEEEISAKDAKKGGK 94          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig94.7.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J7_ECTSI4.070e-4285.00U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=E... [more]
A0A836C9X5_9STRA3.070e-3677.22U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=T... [more]
A0A7S2E5C6_9STRA1.800e-3474.39U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A7S2FS84_9STRA2.910e-3476.32U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
W7TE23_9STRA1.160e-3378.38U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N... [more]
A0A7S2UV99_9STRA2.160e-3372.62U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A6G0XI18_9STRA3.290e-3270.37U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=A... [more]
C3ZIA6_BRAFL1.020e-3168.35U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=B... [more]
A0A485KDN7_9STRA3.340e-3169.74U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=A... [more]
F0Y7P1_AURAN4.220e-3166.25U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..57
e-value: 4.0E-9
score: 46.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..56
e-value: 2.5E-15
score: 55.9
NoneNo IPR availableGENE3D2.30.30.100coord: 1..69
e-value: 2.6E-25
score: 89.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..121
NoneNo IPR availablePANTHERPTHR23338:SF16U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4coord: 1..112
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..112
IPR034101Sm-like protein Lsm4CDDcd01723LSm4coord: 1..63
e-value: 1.28826E-35
score: 116.521
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig94contigD-mesarthrocarpus_Contig94:22843..24487 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig94.7.1mRNA_D-mesarthrocarpus_Contig94.7.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig94 21474..24529 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig94.7.1 ID=prot_D-mesarthrocarpus_Contig94.7.1|Name=mRNA_D-mesarthrocarpus_Contig94.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=161bp
MLVELKNGDTYNGRLESCDSWMNIKLRDVIWTSRDGDKFVKLAEVYVRGN
SIKYLTIPDEVMDMVQEEDLSKERRNMGGRGRGRGGRGGRESGGRGRGRG
RGEGRGRGRGRGGERGRGRGGSTRGRGGGGREASAGRGQCVGTVELRLVD
VRIVVVCFLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034101Lsm4
IPR010920LSM_dom_sf