prot_D-mesarthrocarpus_Contig9114.2.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-mesarthrocarpus_Contig9114.2.1
Unique Name	prot_D-mesarthrocarpus_Contig9114.2.1
Type	polypeptide
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length	202

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig9114.2.1 vs. uniprot
Match: D8LU53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU53_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 7.720e-11
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0

Query:   82 GYGERQGHVYNPHEEDQRATTRDLVALGKRGLWKDVVTALVGARVRGVPLNEYMYNSAINAM 143
            G G+R+    +P EE QRA   DL  LG+RG W+D   ALVGARVRGVP+N YMYNSAI+A+
Sbjct:   82 GQGKRE---LDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAV 140

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig9114.2.1 vs. uniprot
Match: A0A6H5KS00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS00_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 8.810e-11
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0

Query:   82 GYGERQGHVYNPHEEDQRATTRDLVALGKRGLWKDVVTALVGARVRGVPLNEYMYNSAINAM 143
            G G+R+    +P EE QRA   DL  LG+RG W+D   ALVGARVRGVP+N YMYNSAI+A+
Sbjct:  500 GQGKRE---LDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAV 558

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig9114.2.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig9114.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LU53_ECTSI	7.720e-11	59.68	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KS00_9PHAE	8.810e-11	59.68	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 93..200 e-value: 6.9E-23 score: 82.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 132..180 e-value: 8.3E-12 score: 45.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 169..198 e-value: 6.4E-6 score: 24.0 coord: 134..167 e-value: 5.9E-10 score: 36.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 132..166 score: 13.208424
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 167..201 score: 9.306201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 107..198

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-mesarthrocarpus_Contig9114	contig	D-mesarthrocarpus_Contig9114:2112..4695 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig9114.2.1	mRNA_D-mesarthrocarpus_Contig9114.2.1	Discosporangium mesarthrocarpum MT17_79	mRNA	D-mesarthrocarpus_Contig9114 2112..4695 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-mesarthrocarpus_Contig9114.2.1 ID=prot_D-mesarthrocarpus_Contig9114.2.1|Name=mRNA_D-mesarthrocarpus_Contig9114.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=202bp
RGRGRGRESGGMWGDTSGTYGGGQQHGGWGDWERDSRGGFRESRKEQGWN
SNIADESRQNSYGGGGSRQEHGWGSDDAGGGGYGERQGHVYNPHEEDQRA
TTRDLVALGKRGLWKDVVTALVGARVRGVPLNEYMYNSAINAMARNGRWK
EAISMLEQMRKDGLNPDGYSYCSAINACANGSQWEKALTLLREMPEKGGF
F*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat