prot_D-mesarthrocarpus_Contig1050.3.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig1050.3.1
Unique Nameprot_D-mesarthrocarpus_Contig1050.3.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length424
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1050.3.1 vs. uniprot
Match: A0A6H5J909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 6.970e-81
Identity = 177/433 (40.88%), Postives = 243/433 (56.12%), Query Frame = 0
Query:    2 GRGRKVRSVEVDDMISRFLFCKDEELHTMLFGKLEEHDKLRLIRIKTPSVERFLSAKPNLLYQYHQAHRNYSKAAHLMDIQAHVD--SNLDVRERLDCVLRAIAALRQCDLSSAQMVAPGWVLNHDKLHTLEDERDVLLTQERVLKQLKDTLSPLEGLRLSGRAGPDLTEELEERSRACERLAFGIANATELYNSCSRFCLWEGCLLVLQCCEANNPREAAALVRSIIWRAVPSRTIQGPGGALHTWMEQRKNDPEQPVRVDHVQEQLDSEAHMRDGQGWSGP----LFEHNGWLEALMDKMLTLCRELLSDKARYVLPVDVVCLTLQDIVDR-HDS----NVLMVPRMLKQAGVSTQRLVDLYIGLAATQDPMSQGNAASRLRVVELLAELLSWWLQD--AQLGQPEFQSEAMPIIRMDRILEELRGRLTSI 421
            G+G    S +VD +I+R L  K   L  MLFG LEEHDK  L+ I+TP VE++L   P  L++++   ++Y KA HLMD +A V+  S + VR R++C+L+AI+A  +CDL SAQMVAPGW LNH KL T+EDERDVLL QER+L +LK T++PLE L   GR    L  EL ER R  E     I + +ELY   S   LWEGCL ++QCCE + P  A  L+RSIIWR VPS +  G       ++   ++ P + V VD V+++LD       G G +       FE +GW   L+DKM  L +ELL+ KA +VL V+ +CL LQ I D  H++    + L V   + +AG+S   L+D Y  L     P        R  V+  L EL +       A  G     SE +   R++R+  +    L S+
Sbjct:  512 GQGGVRGSKKVDSLIARCLSYKAPLLEEMLFGVLEEHDKKLLLSIRTPGVEQYLKRDPEDLFRHYMLSKDYPKAVHLMDREARVEAGSGVHVRHRVECLLKAISACHKCDLDSAQMVAPGWSLNHAKLRTMEDERDVLLVQERLLSELKATMAPLERLAQEGRGTEGLIAELSERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKRLIRSIIWREVPSVSRGGSKCRAQVFISSMRDRPGE-VEVDDVRQELDRGLGGGGGDGGTRAGRRIAFEDDGWFTPLLDKMSVLSQELLAHKASFVLSVETLCLELQMIADEFHEAGGSASALCVVEAVGRAGLSALALLDAYEYLNQHHYPSDDHARLRRFAVMARLLELAAAGGDGNKAATGGVGLVSETIRPERLERLAHDTLAGLDSL 943          
BLAST of mRNA_D-mesarthrocarpus_Contig1050.3.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 3.200e-65
Identity = 173/440 (39.32%), Postives = 231/440 (52.50%), Query Frame = 0
Query:    2 GRGRKVRSVEVDDMISRFLFCKDEELHTMLFGKLEEHDKLRLIRIKTPSVERFLSAKPNLLYQYHQAHRNYSKAAHLMDIQAHVD--SNLDVRERLDCVLRAIAALRQCDLSSAQMVAPGWVLNHDKLHTLEDERDVLLTQERVLKQLKDTLSPLEGLRLSGRAGPDLTEELEERSRACERLAFGIANATELYNSCSRFCLWEGCLLVLQCCEANNPREAAALVRSIIWRAVPSRTIQGPGGALHTWMEQRKNDPEQPVRVDHV------QEQLDSEAHMRDGQGWS----GPLFEHNGWLEALM-DKMLTLCRELLSDKARYVLPVDVVCLTLQDIVDR-HDS----NVLMVPRMLKQAGVSTQRLVDLYIGLAATQDPMSQGNAASRLRVVELLAELLSWWLQD--AQLGQPEFQSEAMPIIRMDRILEELRGRLTSI 421
            G+G    S +VD +I+R L  K   L  MLFG LEEHDK  L+ I+TP VER+L   P  L++++   + Y KA HLMD +A V+  S + VR R++C+L+AI+A  +CDL SAQMVAPGW LNH KL T+EDERDVLL QER+L  LK T++PLE L   GR    L  EL ER R  E     I + +ELY   S   LWEGCL ++QCCE + P  A  L+R            +G GG L+  +          VR+  V         L+ E   RDG+  S    GP  +  G    L+ DKM  L +ELLS KA +VL V+ +CL LQ I D  H++    + L V   + +AG+S   L+D Y  L     P        R  V+  L EL +       A  G     SE +   R++R+  +    L S+
Sbjct: 1033 GQGGVRGSKKVDSLIARCLSYKAPLLEEMLFGVLEEHDKKLLMSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQMVAPGWSLNHAKLRTMEDERDVLLVQERLLSDLKATMTPLERLAQEGRGTEGLLAELAERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKKLIRE-----------KGRGGYLYVHVLLGGGGCGGGVRICLVVWHFYPNPLLNLEGCDRDGRHKSFFLLGP--QRPGDTPPLLEDKMSVLSQELLSHKASFVLSVETLCLELQMIADEFHEAGGSASALCVVEAVGRAGLSAVVLLDAYEYLNQHHYPSDDHARLRRFAVMARLLELAAAGGDGIKAAAGGVGLVSETVRPERLERLAHDTLAGLDSL 1459          
BLAST of mRNA_D-mesarthrocarpus_Contig1050.3.1 vs. uniprot
Match: A0A7S1FLK4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FLK4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.800e-11
Identity = 97/395 (24.56%), Postives = 167/395 (42.28%), Query Frame = 0
Query:   15 MISRFLFCKDEELHTMLFGKLEEHDKL-RLIRIKTPSVERFL-SAKPNLLYQYHQAHRNYSKAAHLMDIQAHVDSN-LDVRERLDCVLRAIAALRQC-DLSSAQMVAPGWVLN-------HDKL------HTLEDERDVLLT---QERVLKQLKDTLSPLEGLRLSGRAGPDLTEELEERSRACERLAFGIANATELYNS-CSRFCLWEGCLLVLQCCEANNPREAAALVRSIIWRAVPSRTIQGPGGALHTWMEQRKNDPEQPVRVDHVQEQLDSEAHMRDGQGWSGPLFEHNGWLEALMDKMLTLCRELLSDKARYVLPVDVVCLTLQDI--------VDRHDSNVLMVPRM-LKQAGVSTQRLVDLYIGLAATQDPMSQGNAASRLRVVELL 379
            MI   L  KD   H  L+  L +     RL+ I++P +E++L     +LL++++       KAA +M+  A  + N L + +R+ C+ RA+ +  +  D+ +A M    +  N       HD         TL   ++ L     Q R+L  +KD  S                  +E      E+L+  + + + L+N   +RFC W  CL +L  C+ ++    + L R+II   +P  T        +  +  RK+ P Q               H  +    +  LFE   W+  L  K++ L REL    A YV P++++   L+++         +    +    P + LK AGVS+  L+ LY GL  T + ++ G+   R    E +
Sbjct:  225 MIEACLSSKDANFHHALYEDLFQRGFTDRLVAIQSPYIEQYLYRIDMDLLWRHYVFVGKSQKAAEVMEAWAEDEENGLTLEDRIICLNRALGSGGEGQDIGAAGMEMEQYPFNGINDTRNHDDAVVEGSRSTLAQRKEKLAIATIQRRLLDSMKDNPS------------------VEIPPEILEKLSTTLLDESTLFNDIAARFCQWPTCLTILHACQHHDSANISRLWRAIIATEIP--TTSSSQAVNNMLVNLRKHSPAQ---------------HHEN----TSCLFEDGDWVIPLRQKIVELGRELYGQGADYVFPLEMLSNWLEELRKALVELDANAEQRHSQFWPALTLKDAGVSSDVLIQLYEGLLLTCESVA-GDTEQRRHFSECI 579          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1050.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J909_9PHAE6.970e-8140.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0M6_ECTSI3.200e-6539.32Nucleoporin_N domain-containing protein n=1 Tax=Ec... [more]
A0A7S1FLK4_9STRA1.800e-1124.56Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 130..150
NoneNo IPR availablePANTHERPTHR10350:SF6NUCLEAR PORE COMPLEX PROTEIN NUP155coord: 8..392
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2GENE3D1.25.40.440Nucleoporin, helical domain, central subdomaincoord: 40..102
e-value: 5.0E-8
score: 34.8
IPR042538Nucleoporin, Nup155-like, C-terminal, subdomain 3GENE3D1.20.120.1880coord: 127..413
e-value: 4.9E-19
score: 70.4
IPR004870Nucleoporin, Nup155-likePANTHERPTHR10350NUCLEAR PORE COMPLEX PROTEIN NUP155coord: 8..392

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1050contigD-mesarthrocarpus_Contig1050:1545..8916 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1050.3.1mRNA_D-mesarthrocarpus_Contig1050.3.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig1050 1545..8917 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig1050.3.1 ID=prot_D-mesarthrocarpus_Contig1050.3.1|Name=mRNA_D-mesarthrocarpus_Contig1050.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=424bp
GGRGRKVRSVEVDDMISRFLFCKDEELHTMLFGKLEEHDKLRLIRIKTPS
VERFLSAKPNLLYQYHQAHRNYSKAAHLMDIQAHVDSNLDVRERLDCVLR
AIAALRQCDLSSAQMVAPGWVLNHDKLHTLEDERDVLLTQERVLKQLKDT
LSPLEGLRLSGRAGPDLTEELEERSRACERLAFGIANATELYNSCSRFCL
WEGCLLVLQCCEANNPREAAALVRSIIWRAVPSRTIQGPGGALHTWMEQR
KNDPEQPVRVDHVQEQLDSEAHMRDGQGWSGPLFEHNGWLEALMDKMLTL
CRELLSDKARYVLPVDVVCLTLQDIVDRHDSNVLMVPRMLKQAGVSTQRL
VDLYIGLAATQDPMSQGNAASRLRVVELLAELLSWWLQDAQLGQPEFQSE
AMPIIRMDRILEELRGRLTSIDSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042537Nucleoporin_Nup155_C_2
IPR042538Nucleoporin_Nup155_C_3
IPR004870Nucleoporin_Nup155