Homology
BLAST of mRNA_D-mesarthrocarpus_Contig999.8.1 vs. uniprot
Match: A0A6H5KA42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA42_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.770e-26 Identity = 73/129 (56.59%), Postives = 85/129 (65.89%), Query Frame = 1 Query: 1354 ALRALRSAPRNHVLVLVGAAVVGLPPERLAEAAGMEGARWVSRHELSEPKSLPLEVKPEIARLLGECLPVCTTVEDIEAGHEFLLLMTFISGEAKLDAVRRLEELGFDVSGFDCSAKIQVERAMVGPAP 1740
ALR RSAP N+ LVLVGAA+ LP + LA A+ + GA WV RHEL EP SLPLEVKP +A+ L P C + +D EAG +FLLLMTF E K AV RL ELG + S FD S +IQVE A AP
Sbjct: 878 ALRNWRSAPYNYALVLVGAAL--LPRKALAGASKLPGAVWVDRHELGEPYSLPLEVKPVLAKSLAAQTPTCASCDDNEAGRDFLLLMTFKCSEDKAVAVARLAELGVETSKFDNSPRIQVEHARASSAP 1004
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 1933 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_009860.1 |
| Cds size | 1665 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791148.0120666-UTR-D-mesarthrocarpus_Contig999:16095..16362 | 1680791148.0120666-UTR-D-mesarthrocarpus_Contig999:16095..16362 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig999 16096..16362 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791148.0257866-CDS-D-mesarthrocarpus_Contig999:16362..17692 | 1680791148.0257866-CDS-D-mesarthrocarpus_Contig999:16362..17692 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig999 16363..17692 + |
| 1680791148.0401425-CDS-D-mesarthrocarpus_Contig999:18372..18707 | 1680791148.0401425-CDS-D-mesarthrocarpus_Contig999:18372..18707 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig999 18373..18707 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig999.8.1 >prot_D-mesarthrocarpus_Contig999.8.1 ID=prot_D-mesarthrocarpus_Contig999.8.1|Name=mRNA_D-mesarthrocarpus_Contig999.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=555bp
MYQGGCVAKGLEGGVSGVPAGQVCPGHGQSTMGPSLDFGFGPGLGQTLPH
GIQDSRSVLPPQGQHLNVDNPHSGEFVLGSDGPNLTPGFSQPTPGLAPVQ
FPGAVSALPPFALRQVQLPLPWDWEQHGGGPGNRTGNPHQNSGSPHPSPI
PNKPTEEHLEWSGHNGHMGPFAKQGNPIISRGIVPQQKQMGWATDGGHMS
NFVRGHVDPNTPPLGAQGDQRQQLAEHRDHISPFATHDQHGLGMDGARGD
ERVAREGHGVHALNPFSEHPGGAGWGTESQSQGGRKKKRMRGKRSGVKVH
AKSAAAESLVALAAVPEPALGTAPGVAPAPAALAAPVATASSVEDSEGER
EQARLEETMKQRALRALRSAPRNHVLVLVGAAVVGLPPERLAEAAGMEGA
RWVSRHELSEPKSLPLEVKPEIARLLGECLPVCTTVEDIEAGHEFLLLMT
FISGEAKLDAVRRLEELGFDVSGFDCSAKIQVERAMVGPAPQRSAAILPE
QGQDVSLSKEVNHEADPEACTLVTHGGATTGGLRGGWVPLPTPQSGPGNQ
VGGAG back to topmRNA from alignment at D-mesarthrocarpus_Contig999:16096..18707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-mesarthrocarpus_Contig999.8.1 ID=mRNA_D-mesarthrocarpus_Contig999.8.1|Name=mRNA_D-mesarthrocarpus_Contig999.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2612bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig999:16096..18707+ (Discosporangium mesarthrocarpum MT17_79)
TGGGAGCGGAGGGCGGAGAACTAGGACAGACGCCCCAACATGAGCCCGGT
AGTCCTCATGCCCCCGAAGTGAAGGAAATGAATGTCGAGGTCTATTTTGG
GTCACGTTCTATATCCCCCGATAACTGACCGGTAAGGCTGTTGTGTGTTT
TGTGCTCTCTTCGAGGTCCTAGGTTTTATTCGTATGCGCTTGGCGAGGGA
TGCGCAGATCTGACCCCGGCACAGCTCGCCCCACATACTTCACCCTCCGA
AGACTCCAAGGGACTGAATGTATCAAGGGGGATGTGTTGCGAAGGGCCTG
GAAGGTGGTGTATCTGGGGTACCGGCAGGTCAGGTATGCCCGGGACACGG
GCAGAGTACGATGGGACCATCTCTTGATTTTGGGTTTGGTCCTGGGCTTG
GCCAAACACTCCCACACGGAATCCAAGACAGCCGAAGTGTCCTCCCTCCG
CAGGGTCAGCATCTCAATGTTGATAACCCGCACTCCGGAGAGTTTGTTTT
GGGGAGCGACGGACCAAATTTAACTCCTGGGTTTAGTCAACCTACGCCAG
GTTTGGCACCGGTGCAATTCCCGGGAGCGGTGAGTGCTCTGCCACCGTTT
GCGCTCCGCCAAGTGCAGCTTCCGTTACCCTGGGATTGGGAGCAACACGG
GGGAGGGCCTGGAAATAGGACTGGGAATCCGCACCAAAACTCGGGAAGCC
CACATCCGTCACCCATACCGAACAAGCCAACTGAAGAACACCTGGAGTGG
AGCGGACACAATGGCCACATGGGACCCTTCGCCAAGCAAGGAAATCCCAT
CATTAGCAGGGGTATTGTGCCGCAACAAAAGCAAATGGGATGGGCTACTG
ATGGCGGCCACATGTCCAACTTCGTGCGTGGCCATGTAGACCCCAACACC
CCTCCACTTGGAGCTCAGGGCGACCAGCGACAGCAGTTGGCGGAACATCG
CGACCATATATCCCCCTTCGCCACCCATGACCAACATGGCCTGGGTATGG
ATGGGGCAAGGGGCGATGAGCGAGTTGCACGGGAGGGCCATGGTGTCCAC
GCTTTGAACCCCTTCAGCGAGCACCCAGGCGGCGCCGGTTGGGGCACCGA
ATCCCAATCGCAGGGCGGACGGAAAAAGAAGAGGATGAGGGGGAAACGCT
CGGGGGTTAAGGTACATGCAAAGTCGGCGGCTGCTGAGTCGTTGGTAGCA
CTGGCAGCAGTGCCAGAGCCAGCCTTGGGGACAGCACCTGGCGTAGCACC
AGCGCCCGCGGCATTGGCAGCACCTGTGGCAACAGCGTCGTCGGTCGAGG
ATTCAGAGGGGGAACGTGAGCAGGCTCGTCTCGAAGAGACGATGAAGCAG
AGGGCGCTGCGGGCACTGCGCAGCGCTCCGCGCAACCACGTGCTGGTGCT
GGTGGGGGCCGCGGTGGTTGGGTTGCCGCCTGAGAGGCTGGCGGAGGCTG
CGGGCATGGAGGGTGCACGGTGGGTGTCCCGCCACGAGTTGAGTGAACCA
AAAAGCTTGCCACTAGAGGTCAAGCCGGAGATTGCTCGGCTGCTGGGGGA
GTGCTTGCCTGTCTGCACAACGGTCGAGGACATCGAGGCAGGGCACGGTG
AGGAAGTAGTTGGAGGGGTTGACGGGTTGCTGAGGTTGAAACTGCGTTCT
TCGACAGGGGTTAGTGGCATGAGTGGACATTCCAGGAACTGTTGTGCGTG
GTAGGGACTTGCCTTCTCCCCTGCGAAGAATCTCCACGGGCATGGACCGA
GGTTGCTTCTCTCTCCTCTTGGCACCCCATTATTGCCACCTTATGCCCCC
TTATGGTGCTTTGCACGCCTTGGAAGAGGGCAAACGCAACCCCTCCTTGC
AGCAGAATATCAATTTTCCCACTGATGTAAGGCCGGTGTATTCAACTGCT
GAACGCCCCCGCCTGTCTGAACTGTGCTTCTAGTCTTCAGGCTGCCATTC
CAAACCGCATGTGCTCCCACTTGCCCTCCTGCATTGACCGCTCTTGTTTT
CTTATCTCGTTCTTGCTTAATCTTATGTTGTTTTTGTTTGATATATATAT
TTGTCGTGACACCACATACACGGAGGTGTATGCATGAAGTGATGGAGAGC
TGAGGGTGCTGTATAGCCATGCCTACCCCGCTTCTGTACATCATGCTTTC
TCTTCTTCTGCTAATAAATAGGGTAGGTGGACTTAGAAGAATAAAGAGAG
TGGTCCTTCATGCCACACACATGCATCCCACACACATGCCATGCAAATCG
CTCCCTGCCCATGCCTGCTTATGGCAGAGTTTCTGCTCCTGATGACCTTC
ATCTCGGGGGAGGCCAAGCTAGATGCCGTGAGGCGCCTTGAGGAGTTGGG
TTTTGATGTCTCGGGGTTCGACTGCTCGGCCAAGATACAGGTGGAGCGTG
CCATGGTTGGGCCAGCACCCCAAAGGTCTGCTGCCATCTTGCCTGAGCAG
GGGCAGGATGTGTCCCTCTCAAAAGAGGTGAATCATGAGGCGGACCCTGA
GGCGTGCACGCTGGTTACCCACGGGGGTGCCACCACAGGTGGCCTCCGTG
GAGGCTGGGTGCCGCTCCCTACTCCTCAATCAGGCCCTGGGAACCAGGTA
GGGGGGGCAGGG back to topCoding sequence (CDS) from alignment at D-mesarthrocarpus_Contig999:16096..18707+ >mRNA_D-mesarthrocarpus_Contig999.8.1 ID=mRNA_D-mesarthrocarpus_Contig999.8.1|Name=mRNA_D-mesarthrocarpus_Contig999.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1665bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig999:16096..18707+ (Discosporangium mesarthrocarpum MT17_79)
ATGTATCAAGGGGGATGTGTTGCGAAGGGCCTGGAAGGTGGTGTATCTGG
GGTACCGGCAGGTCAGGTATGCCCGGGACACGGGCAGAGTACGATGGGAC
CATCTCTTGATTTTGGGTTTGGTCCTGGGCTTGGCCAAACACTCCCACAC
GGAATCCAAGACAGCCGAAGTGTCCTCCCTCCGCAGGGTCAGCATCTCAA
TGTTGATAACCCGCACTCCGGAGAGTTTGTTTTGGGGAGCGACGGACCAA
ATTTAACTCCTGGGTTTAGTCAACCTACGCCAGGTTTGGCACCGGTGCAA
TTCCCGGGAGCGGTGAGTGCTCTGCCACCGTTTGCGCTCCGCCAAGTGCA
GCTTCCGTTACCCTGGGATTGGGAGCAACACGGGGGAGGGCCTGGAAATA
GGACTGGGAATCCGCACCAAAACTCGGGAAGCCCACATCCGTCACCCATA
CCGAACAAGCCAACTGAAGAACACCTGGAGTGGAGCGGACACAATGGCCA
CATGGGACCCTTCGCCAAGCAAGGAAATCCCATCATTAGCAGGGGTATTG
TGCCGCAACAAAAGCAAATGGGATGGGCTACTGATGGCGGCCACATGTCC
AACTTCGTGCGTGGCCATGTAGACCCCAACACCCCTCCACTTGGAGCTCA
GGGCGACCAGCGACAGCAGTTGGCGGAACATCGCGACCATATATCCCCCT
TCGCCACCCATGACCAACATGGCCTGGGTATGGATGGGGCAAGGGGCGAT
GAGCGAGTTGCACGGGAGGGCCATGGTGTCCACGCTTTGAACCCCTTCAG
CGAGCACCCAGGCGGCGCCGGTTGGGGCACCGAATCCCAATCGCAGGGCG
GACGGAAAAAGAAGAGGATGAGGGGGAAACGCTCGGGGGTTAAGGTACAT
GCAAAGTCGGCGGCTGCTGAGTCGTTGGTAGCACTGGCAGCAGTGCCAGA
GCCAGCCTTGGGGACAGCACCTGGCGTAGCACCAGCGCCCGCGGCATTGG
CAGCACCTGTGGCAACAGCGTCGTCGGTCGAGGATTCAGAGGGGGAACGT
GAGCAGGCTCGTCTCGAAGAGACGATGAAGCAGAGGGCGCTGCGGGCACT
GCGCAGCGCTCCGCGCAACCACGTGCTGGTGCTGGTGGGGGCCGCGGTGG
TTGGGTTGCCGCCTGAGAGGCTGGCGGAGGCTGCGGGCATGGAGGGTGCA
CGGTGGGTGTCCCGCCACGAGTTGAGTGAACCAAAAAGCTTGCCACTAGA
GGTCAAGCCGGAGATTGCTCGGCTGCTGGGGGAGTGCTTGCCTGTCTGCA
CAACGGTCGAGGACATCGAGGCAGGGCACGAGTTTCTGCTCCTGATGACC
TTCATCTCGGGGGAGGCCAAGCTAGATGCCGTGAGGCGCCTTGAGGAGTT
GGGTTTTGATGTCTCGGGGTTCGACTGCTCGGCCAAGATACAGGTGGAGC
GTGCCATGGTTGGGCCAGCACCCCAAAGGTCTGCTGCCATCTTGCCTGAG
CAGGGGCAGGATGTGTCCCTCTCAAAAGAGGTGAATCATGAGGCGGACCC
TGAGGCGTGCACGCTGGTTACCCACGGGGGTGCCACCACAGGTGGCCTCC
GTGGAGGCTGGGTGCCGCTCCCTACTCCTCAATCAGGCCCTGGGAACCAG
GTAGGGGGGGCAGGG back to top
|