mRNA_D-mesarthrocarpus_Contig9989.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE) HSP 1 Score: 163 bits (413), Expect = 1.120e-45 Identity = 91/224 (40.62%), Postives = 129/224 (57.59%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVT--FYEILLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 + P+RE GS+M A TRPDIA++VR VA+Y PK VHW D+LGY GI+F G + + Y DA +A D RSV+GG V GGAVSW S+TQ+ + +STTE+EY+AL + +E+LFLR + P V C+P EDI V +L +N + + ++V F L+ SV ++ + Q D LTK++S++ FE H +MNL Sbjct: 96 EFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFTLPQVGMPCIPVFEDIQGVIQLAQNPISNSNSKHINVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 319
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 159 bits (402), Expect = 1.820e-43 Identity = 89/224 (39.73%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVTFYEI--LLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 D+P+RE GS+M A TRPDIA++VR VA+Y PK VHW+ +LGY+ GITF G + + DA YA D RSV+GG VM GG V+W S+TQ+ + +STTE+EY+A++ + +EVLFLR V + P C+P ED +++ N + +DV + I L+ S+ ++ T Q D LTK IS+ F H +MNL Sbjct: 152 DVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 160 bits (405), Expect = 3.670e-43 Identity = 89/224 (39.73%), Postives = 127/224 (56.70%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVT--FYEILLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 + P+RE GS+M A TRPDIA++VR VA+Y PK VHW D+LGY GI+F G + + Y DA +A D RSV+GG V GGAVSW S+TQ+ + +STTE+EY+AL + +E+LFLR + + P V C+P ED +L +N + + +DV F L+ SV ++ + Q D LTK++ ++ FE H +MNL Sbjct: 238 EFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 461
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE) HSP 1 Score: 164 bits (415), Expect = 7.720e-43 Identity = 91/224 (40.62%), Postives = 128/224 (57.14%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVT--FYEILLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 D P+RE GS+M A TRPDIA++VR VA+Y PK VHW D+LGY GI+F G + + Y DA +A D RSV+GG V GGAVSW S+TQ+ + +STTE+EY+AL + +E+LFLR + + P V C+P ED +L +N + + +DV F L+ SV ++ + Q D LTK++S++ FE H +MNL Sbjct: 1068 DFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 1291
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 156 bits (394), Expect = 7.790e-43 Identity = 89/224 (39.73%), Postives = 124/224 (55.36%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVTFYEI--LLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 D+P+RE GS+M A TRPDIA++VR VA+Y PK VHW+ +LGY+ GITF G + + DA YA D RSV+GG VM GG V+W S+TQ+ + +STTE+EY+A++ + +EVLFLR V + P C+P ED ++ N + +DV + I L+ S+ + T Q D LTK IS+ F H +MNL Sbjct: 97 DVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.720e-41 Identity = 88/224 (39.29%), Postives = 123/224 (54.91%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVT--FYEILLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 D P+RE GS+M A TRPDIA++VR VA+Y PK VHW +LGY GI+F G + + Y DA +A D RSV+GG V GG VSW S+TQ+ + +STTE+ Y+AL + +E+LFLR V + P V C+P ED +L +N + + +DV F L+ SV ++ + Q D LTK + ++ FE H +MNL Sbjct: 127 DFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAFESHRDFVMNL 350
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.760e-41 Identity = 89/224 (39.73%), Postives = 127/224 (56.70%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVT--FYEILLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 + P+RE GS+M A TRPDIA++VR VA+Y PK VHW D+LGY GI+F G + + Y DA +A D RSV+GG V GGAVSW S+TQ+ + +STTE+EY+AL + +E+LFLR + + P V C+P ED +L +N + + +DV F L+ SV ++ + Q D LTK++ ++ FE H +MNL Sbjct: 1574 EFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 1797
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5JGZ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ8_9PHAE) HSP 1 Score: 155 bits (391), Expect = 1.810e-41 Identity = 90/224 (40.18%), Postives = 125/224 (55.80%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVTFYEI--LLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 D+P+RE GS+M A TRPDIA++VR VA+Y PK VHW+ VLGY+ T GITF G R + + +A YA D RSV+GG VM GG V+W S+TQ+ + +STTE+EY+A++ + +EVLFLR V P C+P ED ++ N + +DV + I L+ S ++ T Q D L K IS++ F H +MNL Sbjct: 194 DVPFRELVGSLMWMATQTRPDIANAVRAVARYCASPKMVHWKATLGVLGYVWTTSWMGITFERGVVTRMRMQVFVNADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYMAIADVLKEVLFLRQVWRCTLPDAGMPCIPVFEDTHGAIQIAHNPITNSNSKHIDVRHHLIRELVERKEISFTHVPTQFQHADFLAKAISKDSFALHRDFVMNL 417
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 155 bits (391), Expect = 2.640e-41 Identity = 88/224 (39.29%), Postives = 124/224 (55.36%), Query Frame = 1 Query: 22 DIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVTFYEI--LLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 D+P+RE GS+M A TRPDIA++VR VA+Y PK VHW+ +LGY+ GITF G + + DA YA D RSV+GG VM GG V+W S+TQ+ + +STTE+EY+A++ + +EVLFLR V + P C+P ED ++ N + +DV + I L+ S+ ++ T Q D LTK IS+ H +MNL Sbjct: 214 DVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNL 437
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.880e-41 Identity = 87/225 (38.67%), Postives = 127/225 (56.44%), Query Frame = 1 Query: 19 VDIPYREAPGSMM*AAVMTRPDIASSVRDVAKYSTEPKAVHWRVVKDVLGYLNTHPK*GITFG-GPGARYEVSAYTDAAYACSRNDSRSVTGGAVMFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVEKHCVPFAEDIDEVSKLVENTSNLGRTLMLDVTFYEI--LLTGMRFSVNYLSTLDQTEDVLTKNISENGFERHVTSLMNL 684 V P+RE GS+M A TRPDIA++VR VA+Y PK +HWR +LGY+ GITF G A + + DA YA D RSV+GG VM GG +SW S+TQ+ + +STTE+EY++L+ + +EVLFLR V + P C+P ED +L +N + + +DV + I L+ S+ ++ + Q D LTK ++ FE H +M++ Sbjct: 29 VSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMSM 253 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9989.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9989.1.1 >prot_D-mesarthrocarpus_Contig9989.1.1 ID=prot_D-mesarthrocarpus_Contig9989.1.1|Name=mRNA_D-mesarthrocarpus_Contig9989.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=129bp MFYGGAVSWISKTQRIIAMSTTESEYIALSAIAQEVLFLRSVLELLQPHVback to top mRNA from alignment at D-mesarthrocarpus_Contig9989:315..1001+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9989.1.1 ID=mRNA_D-mesarthrocarpus_Contig9989.1.1|Name=mRNA_D-mesarthrocarpus_Contig9989.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=687bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9989:315..1001+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9989:315..1001+ >mRNA_D-mesarthrocarpus_Contig9989.1.1 ID=mRNA_D-mesarthrocarpus_Contig9989.1.1|Name=mRNA_D-mesarthrocarpus_Contig9989.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=387bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9989:315..1001+ (Discosporangium mesarthrocarpum MT17_79)back to top |