mRNA_D-mesarthrocarpus_Contig9983.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9983.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9983.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9983.1.1 vs. uniprot
Match: D8LFD9_ECTSI (UBP-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD9_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.620e-24
Identity = 84/189 (44.44%), Postives = 104/189 (55.03%), Query Frame = 1 
Query:    1 HSLELSTGRIWDYRGDRYAHRSLRSSFVAIGEGPRALGSCSRMDGSLWASHGSADGGGGRWRELGP-------------EGRGGWGGGEGGQASLFGWSAEDSEEGG---KVALVRREYELLVARQLGDQQRYFEELIAKTVAEEAEANAPPEETLSLEEREEVAEAHREIEELVHRYEDVLDQLREEE 519
            +SLELSTGR+WDY GD YAHR+LR       +     G   R DG+ W   G    GGGR  ELG              +          G   L+     D + G    K+A+V REYE LVARQL +QQRYFE+LIA  VA +AEANAP EE L+ EER EV +  + I+EL  +YE +LD LR +E
Sbjct:  710 YSLELSTGRVWDYIGDCYAHRALRGHLAPSHDRAGRQGQGQRGDGARW---GRGSSGGGRGAELGSXXXXXXXXXXXXXD----------GSPPLYSEGGFDDQGGASSLKMAVVSREYEALVARQLQEQQRYFEDLIATAVAVDAEANAPVEEVLTDEERAEVGKLRQAIDELSGKYEGILDSLRTDE 885
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9983.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFD9_ECTSI1.620e-2444.44UBP-type domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9983contigD-mesarthrocarpus_Contig9983:131..3743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFD9
PFAMsBRAP2,zf-RING_2,zf-UBP
Model size1058
Max annot lvl2759|Eukaryota
KEGG koko:K00413,ko:K10632,ko:K11407
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05034,ko05165,ko05203,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016,map05034,map05165,map05203
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032182,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0042802,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902494,GO:1990234
Exons3
Evalue6.18e-16
EggNOG OGsKOG0804@1|root,KOG0804@2759|Eukaryota
EC2.3.2.27,3.5.1.98
Descriptionnuclear localization sequence binding
Cds size399
COG categoryGO
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03036,ko04121,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.5775912-UTR-D-mesarthrocarpus_Contig9983:130..6631680791147.5775912-UTR-D-mesarthrocarpus_Contig9983:130..663Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9983 131..663 -
1680791147.653136-UTR-D-mesarthrocarpus_Contig9983:3617..37431680791147.653136-UTR-D-mesarthrocarpus_Contig9983:3617..3743Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9983 3618..3743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.5991912-CDS-D-mesarthrocarpus_Contig9983:663..8411680791147.5991912-CDS-D-mesarthrocarpus_Contig9983:663..841Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9983 664..841 -
1680791147.615221-CDS-D-mesarthrocarpus_Contig9983:1483..16091680791147.615221-CDS-D-mesarthrocarpus_Contig9983:1483..1609Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9983 1484..1609 -
1680791147.6356351-CDS-D-mesarthrocarpus_Contig9983:3522..36171680791147.6356351-CDS-D-mesarthrocarpus_Contig9983:3522..3617Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9983 3523..3617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9983.1.1prot_D-mesarthrocarpus_Contig9983.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9983 664..3617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9983.1.1

>prot_D-mesarthrocarpus_Contig9983.1.1 ID=prot_D-mesarthrocarpus_Contig9983.1.1|Name=mRNA_D-mesarthrocarpus_Contig9983.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=133bp
MDGSLWASHGSADGGGGRWRELGPEGRGGWGGGEGGQASLFGWSAEDSEE
GGKVALVRREYELLVARQLGDQQRYFEELIAKTVAEEAEANAPPEETLSL
EEREEVAEAHREIEELVHRYEDVLDQLREEEV*
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mRNA from alignment at D-mesarthrocarpus_Contig9983:131..3743-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9983.1.1 ID=mRNA_D-mesarthrocarpus_Contig9983.1.1|Name=mRNA_D-mesarthrocarpus_Contig9983.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3613bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9983:131..3743- (Discosporangium mesarthrocarpum MT17_79)
CACAGCCTGGAGCTCTCCACGGGCCGGATATGGGACTACCGAGGCGATCG
CTATGCCCACCGCTCACTCCGGAGCTCCTTCGTAGCCATTGGAGAGGGCC
CCAGAGCGCTTGGATCTTGCTCAAGGATGGACGGATCTCTGTGGGCTTCG
CATGGCAGTGCAGACGGAGGAGGGGGAAGGTGGAGGGAACTGGGCCCAGA
GGGCAGAGGTGGCTGGGGGGGGTGGGGAGGAGGTGGCTTCTCAAGCTCCT
TAAACGGTCGGATTTCTGCAACGGAGGTGAGACAAGGACTTGTTGCTTTG
CCGATTTTTTTTTATTATTTTTTTGTTGATTTTTGTTGTGTGCAGCATTT
TTTGTTGATTTTTCTTGTGTTAATTGTTGTGATCGTTAGTGCTGTTTGTT
ACGTGACTAAACTGGGCTACCAAGAATGCAGGGGGGTCTTTTCGCCCTTG
CCTTTGCACTGTGGTTGTAGAGGCCATACTTGTGGGGGGCAACTGTGTGT
ATGGTGGAATCATGGTCATCATTGGCATCCAAGGAGTTGGGGTGGGTAAT
ACTGTGGGTCTTGGGGTCACCATCCACGAAGAGCTGTCTCGACCCTTCTC
CTCTTGACCCTTCTCCTCTTGCAACGGTATTTAGCCAAGGGAAAGCAAAT
GAGGGGGTCAACATCCTTTTGGGCATCCCCGGAACGATCTTTCTCCTCTC
TCGATTCACCAGAGTTTTCAACAGCAATAAATTCTTGTTGCTTCTCGAAA
CAGGCTCTTAATTGATGGCTCTAGAGCAGTGCAGTAGGGCTCTGGAGCGA
TGATCCGCGAGGTGCCTGGCACCATGTGAACAGAACAAATGATACACAGA
GTATTGTTGATCGACATGCTTCACAACACTGTGCATAGTATCAACCGCTT
CTCGGCATTTTTTTTTTTTTACGATGAGGACACAAGCTTCGTAAAAAAAG
AAAAGTAGGGCCACAGTGGAGGCGCTTTGTTTTGTTTTATTTTATTTACC
TGACCGACGTGTTTTTTCTTTTCCTTTTTCAGGGTTTTGTTGGATCAGGT
TACACACGTACGCAGTGAAGTAAAACAGGTCATTTGGGGTCATATCAGAC
TGGTTCGGGGTTGGGCTGACTGACACCTCCCCTGCTGTTGAAGACAGATC
AAAGACTGTTCCTCTTATCCATCACATGAGGATTTCAGAGTGATGCACAC
ACAAGGCCACCCGTTTCCTGGTTTTGAAAGCATCTTAAGATGGGTGTTGT
GTTAGTGTTAGGGATAGTTTGTGTTTGTGTTGTGTTTGTGTTGCGTAACT
GCTTTTTAACACACAATACTTGTTTTACATTACTTTTTTTTCCTGAGCTT
TCTTGTTTCTAGTCTCTCAGCCTTGTTTTGACCGCGGTAATTTGAGGTGT
TTACCAACAGTTGACCCGACCTCAATGGACCTGATGAAATTTTGGCATAA
GACCGTTTAGATCTGAGCCTAAAATTTCATGAGGCCATTTCAAGTTGGGT
CAGATGACAGTAAACACCTGTAATATTGTGGTAAACACCTGTAATAATGT
GGTAAACACCTGTAATAATGTGGTAAATACCTGTATTAATGCGGTAAACA
CCTGTAATTATGTGGTAAACACCTGTAATAATGTGGTAAATACCTGTGAT
AATGTGGTAAACACCTGTAATAATGCGGCAAACACCTGTAATAATGTGGT
AAACACCTGTAATTATGCGGTAAACACCTGTAATTATGAGGTAAATACCT
GTAATAATGTGGTAAATACCTGTAATAATGTGGTAAACACCTGTAATAAT
GTGGTAAACACCTGTAATAATGTGGTAAACACCTGTAATAATGTGGTAAA
CACCTGTAATAATGTGGTAAACACCTGTAATAATGTGGTAACACCTGTAA
TATTGTGGTAAATACCTTTAATAATGTGGTAAACACCTGTAATTATGCGG
TAAACACCTGTAATAATGTGGTAAATACCTGCAATAAAGGGAACCGTTTC
TCGCAGAGGCACAGCGCACCTCAAAGCCCCTCCTTCACCCCCTAGTTTGT
CATTCCCCTGCCCACAATAACCTGCCATCAGGCGGGAGAAGAGCTCTGGC
TGGGGAGGGCTGGGGGGGCAGGGAACTCCGGCAGCGGGGAAGGAGGGCAA
GCATCCCTGTTCGGATGGTCTGCGGAGGATTCAGAGGAGGGCGGAAAGGT
AGCCTTGGTGAGGAGGGAGTATGAGCTCCTGGTGGCAAGGCAGCTGGGGG
ATCAGCAGAGGTGCCTGCGATACGCTGTGCCACATGTCTACGCGTCATCC
TTCAAACAGTCGCTCTTCTAGGCGTATTTGTCGCTCAGCTGTGTTCGATG
TCCACAGGTGTTTTTAAGGGTTGTTTTTTTTGTCAGCGTGGGGCGAGAGC
AGTTAGTGTGTCGACTCCTCGGCGGTGCTGTTTTCGAGCTGCGGTACCAA
GACCGTGTGGCATGTGGTGGCTTGTTTCCCTGCTCCCTCATCCCCCCCTG
CCTCCGGGCGTGCTCTGCAAAAAGATGCCACTGTTTTCGTGGGTGTTGTG
CGCATGGGGTGGGTGTTGTGCACATGGGGTAGGTGTTGTGCACATGGGGT
GGGTGTTATGCACATGGGGTAGGTGTTATGCACATGGGTAGAAGGCACCT
TTCCTGCGAGCTGTGGAAGGAATTTGCCTTCGGACTGGGGCATAAATGTA
GGGGGTCTCCCCTGGCTGGTTTTCACACCTCATGCCAGATGAGACGGATA
TCCTGCGACCCTTAACCTTAGCCTTGTGGCACCAACCCGTGGTCCCAACC
CCAACCCGTGGTCCCAACCCCAACCCTCATCCTAATCCGAACCCCAACCC
CAACCCTAACCCTCTATGAACCGCCGCTGCGCAACCCCCTCTAATCTATT
AGATATTTTGAGGAGCTCATCGCCAAGACCGTCGCAGAAGAGGCGGAGGC
AAACGCCCCTCCCGAGGAAACCCTTTCTTTGGAAGAGAGGGAGGAGGTGG
CAGAGGCCCATCGTGAGATAGAGGAGCTTGTTCACCGGTACGAGGATGTC
CTGGACCAGCTCAGGGAAGAGGAGGTGTGAACGGATTTGAGATTTGTATG
CGCGTGTGCCACGGTGACAGGTGGCAACGGGGATCAGCGCCTGCATTTGA
GGGGTCATGGGCGGAGGTCTGAGACCAGGGAGGGATGCTGGTAAATGTTA
CGGTGGGGTATACCTCCACGCAGCAACCCTGAGGTAGAAGGATCGGAAAG
GAGAAAAAAAGAGAAAGAACGGGGTTGTGTACGGTAGGAGGCATACTATA
CTTCAAGGTATATCTACAGCAGAATTATGACATATATATACCGTGTGTCA
TGTATTACAGGTCTTCGAAGTACTTTGTGAACAGTATTGTGCTGTCTGTG
TGTGCTCATTCGAAACAACTCGGCAGGAGACAGCACGGACGGTCCGGGCA
GAGAATCGGCTCTTGATCAAGAGCCAGCGTGAGCAGAGGGACCTGGTGGC
CCGCCTGGAGCAGGAGGTGGTGGACACCAAACGCGTCTGCGAGAGGCAGA
TGTCAGAGCTTGATGGGCAGATCCAGGACCTGACTTTCTACCTCAAGGCC
CAGCAAGAAGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9983:131..3743-

>mRNA_D-mesarthrocarpus_Contig9983.1.1 ID=mRNA_D-mesarthrocarpus_Contig9983.1.1|Name=mRNA_D-mesarthrocarpus_Contig9983.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=399bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9983:131..3743- (Discosporangium mesarthrocarpum MT17_79)
ATGGACGGATCTCTGTGGGCTTCGCATGGCAGTGCAGACGGAGGAGGGGG
AAGGTGGAGGGAACTGGGCCCAGAGGGCAGAGGTGGCTGGGGGGGCGGGG
AAGGAGGGCAAGCATCCCTGTTCGGATGGTCTGCGGAGGATTCAGAGGAG
GGCGGAAAGGTAGCCTTGGTGAGGAGGGAGTATGAGCTCCTGGTGGCAAG
GCAGCTGGGGGATCAGCAGAGATATTTTGAGGAGCTCATCGCCAAGACCG
TCGCAGAAGAGGCGGAGGCAAACGCCCCTCCCGAGGAAACCCTTTCTTTG
GAAGAGAGGGAGGAGGTGGCAGAGGCCCATCGTGAGATAGAGGAGCTTGT
TCACCGGTACGAGGATGTCCTGGACCAGCTCAGGGAAGAGGAGGTGTGA
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