mRNA_D-mesarthrocarpus_Contig9979.1.4 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9979.1.4
Unique NamemRNA_D-mesarthrocarpus_Contig9979.1.4
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9979.1.4 vs. uniprot
Match: A0A662WXV3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXV3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.590e-6
Identity = 49/172 (28.49%), Postives = 72/172 (41.86%), Query Frame = 1 
Query:  649 AAAGGNLEAMEYLLSAGLEECSSDAFDLSAARGRVDILEWLHGNLPECTGTYLAMNGAXXXXXXXXXXXXXXXGTEGCTKVSQEPSSLGSVRRTVERKLSTDVFS-----SKKDRMLYVQNDKSPDSFSLSLSMYLVAWPCQFSQDAMDSAAGNGHLEVVKWLHQNRSEGCS 1149
            AA  G+LE  +YL   G   CS++A  ++A  G + ++EW++ +  + +G+ L    +               G   C +V   P +       V   L    F      S + R       ++ DS           W       AMD AA  GHLEVVKWLH NR+EGC+
Sbjct:  335 AAVKGHLELAQYLYDEGFPGCSTEAMLVAARNGDLKMVEWIYNHFGDTSGSGLFAQSSGRPIVM---------GDPNCLEVEAGPVASAMDAAAVNGHLEVLQFLHGLNISTEHRGRKRHRGEAGDSERDGRK----PWATHI---AMDGAAERGHLEVVKWLHTNRTEGCT 490
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BLAST of mRNA_D-mesarthrocarpus_Contig9979.1.4 vs. uniprot
Match: F4Q1H4_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q1H4_CAVFA)

HSP 1 Score: 59.7 bits (143), Expect = 6.170e-6
Identity = 49/186 (26.34%), Postives = 83/186 (44.62%), Query Frame = 1 
Query:  616 PLVFSSSPLDCAAAGGNLEAMEYLLSAGLEECSSDAFDLSAARGRVDILEWLHGNLPECTGTYLAMNGAXXXXXXXXXXXXXXXGTEGCTKVSQEPSSLGSVRRTVERKLSTDVFSSKK--DRMLY------VQNDKSPDSFSLSLSMYLVAWPCQFSQDAMDSAAGNGHLEVVKWLHQNRSEGCS 1149
            P V      D AA  G L  +E L S  +    S A  +++  G+ +I+ +LH  LP+   + + M+                  +EGCTK S   +++G     V    S  +   K+  D+ +Y      + + +  +     L+    + P   + +AMD AA  GHL ++++LH NRSEGC+
Sbjct:  157 PNVCLKGIADNAAKCGYLPIIELLNSYNIPFNRSKAMHIASVNGQFNIMRYLHDYLPKKQSSTVMMDYTSSNGNLELLKFLHENRSEGCTKASIHWAAMGGYFEVVXXXYSNRLLDLKRGGDQDIYRINLIDIVSREGYNEILKFLNENRSSIPTTGTTNAMDWAAERGHLNILEYLHLNRSEGCT 342
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BLAST of mRNA_D-mesarthrocarpus_Contig9979.1.4 vs. uniprot
Match: G4Z6I9_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6I9_PHYSP)

HSP 1 Score: 52.0 bits (123), Expect = 6.410e-5
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query: 1075 MDSAAGNGHLEVVKWLHQNRSEGCS 1149
            MD+AAG+GHLEVVKWLH NRSEGC+
Sbjct:    1 MDTAAGSGHLEVVKWLHVNRSEGCT 25
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9979.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A662WXV3_9STRA4.590e-628.49Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
F4Q1H4_CAVFA6.170e-626.34Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
G4Z6I9_PHYSP6.410e-584.00Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9979contigD-mesarthrocarpus_Contig9979:111..2220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo133358
PFAMsAnk_2,Helicase_C,SNF2_N
Model size1227
Max annot lvl4776|Peronosporales
KEGG koko:K10841
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.71e-06
EggNOG OGsCOG0553@1|root,KOG0387@2759|Eukaryota,3QDJY@4776|Peronosporales
DescriptionSNF2 family N-terminal domain
Cds size1224
COG categoryKL
BRITEko00000,ko00001,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.4210484-CDS-D-mesarthrocarpus_Contig9979:111..1801680791147.4210484-CDS-D-mesarthrocarpus_Contig9979:111..180Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9979 112..180 -
1680791147.435157-CDS-D-mesarthrocarpus_Contig9979:590..7831680791147.435157-CDS-D-mesarthrocarpus_Contig9979:590..783Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9979 591..783 -
1680791147.4486737-CDS-D-mesarthrocarpus_Contig9979:921..10641680791147.4486737-CDS-D-mesarthrocarpus_Contig9979:921..1064Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9979 922..1064 -
1680791147.458626-CDS-D-mesarthrocarpus_Contig9979:1401..22201680791147.458626-CDS-D-mesarthrocarpus_Contig9979:1401..2220Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9979 1402..2220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9979.1.4prot_D-mesarthrocarpus_Contig9979.1.4Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9979 112..2220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9979.1.4

>prot_D-mesarthrocarpus_Contig9979.1.4 ID=prot_D-mesarthrocarpus_Contig9979.1.4|Name=mRNA_D-mesarthrocarpus_Contig9979.1.4|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=408bp
KVIYYRVCDRRDRSLLHQSTNHSMRRTRWRGLTKRLRGLRGWRGWRGWKG
CPKHRKRQPCADPVQPVSDESWGFEEEKNVERGAKGLSAFDACILNWRVR
DSIVSYQAGVKFRLFKEGDVAAARGHVGLIELKRKLGLVEIEGERPKSQL
GNEGGPVPADAVPSAIREDSTGGTSRVILPPHNIWHDQERAGDYLARGPP
PLGSEPLVFSSSPLDCAAAGGNLEAMEYLLSAGLEECSSDAFDLSAARGR
VDILEWLHGNLPECTGTYLAMNGAAANGHLETVKWLHGNGTEGCTKVSQE
PSSLGSVRRTVERKLSTDVFSSKKDRMLYVQNDKSPDSFSLSLSMYLVAW
PCQFSQDAMDSAAGNGHLEVVKWLHQNRSEGCSWQAMDEAATNGHLDVVS
FLHYASKE
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mRNA from alignment at D-mesarthrocarpus_Contig9979:111..2220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9979.1.4 ID=mRNA_D-mesarthrocarpus_Contig9979.1.4|Name=mRNA_D-mesarthrocarpus_Contig9979.1.4|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2110bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9979:111..2220- (Discosporangium mesarthrocarpum MT17_79)
AAGGTTATCTATTATCGGGTGTGCGACAGGCGGGACCGTAGTCTTCTGCA
TCAAAGTACAAACCATTCGATGAGAAGGACGCGGTGGAGGGGTTTGACAA
AACGGCTGAGGGGCTTACGGGGGTGGCGGGGGTGGAGAGGGTGGAAAGGG
TGTCCCAAGCACCGGAAGCGTCAGCCATGTGCAGATCCAGTACAGCCTGT
CTCGGACGAGAGTTGGGGATTTGAAGAAGAAAAAAATGTAGAGAGGGGGG
CGAAAGGTCTCTCAGCCTTCGATGCTTGTATCCTGAACTGGCGCGTCAGG
GATTCTATCGTCTCATATCAAGCTGGTGTCAAGTTCAGACTCTTCAAGGA
AGGAGATGTGGCTGCTGCCCGTGGCCACGTGGGGCTTATCGAGCTCAAGC
GGAAACTAGGTCTTGTTGAAATCGAAGGTGAAAGGCCGAAGTCCCAGCTA
GGCAATGAAGGTGGTCCTGTTCCAGCTGACGCGGTACCCTCGGCGATTAG
GGAAGATTCCACGGGAGGCACGAGTAGGGTGATCCTTCCCCCGCACAACA
TTTGGCATGATCAAGAGAGGGCTGGAGACTATCTGGCGAGGGGCCCCCCG
CCTCTTGGTTCGGAACCACTTGTGTTCTCCTCATCCCCCCTCGACTGTGC
CGCAGCCGGAGGAAACCTGGAAGCCATGGAGTATCTTTTATCAGCAGGCT
TAGAGGAATGCTCTTCCGACGCCTTTGACCTGTCCGCGGCTCGGGGGCGG
GTGGACATACTGGAGTGGTTGCACGGGAACCTTCCTGAATGCACCGGCAC
TTACCTGGCCATGAATGGGGTGAGCGCAAGAGCTGGGGTAACTTCTTTGC
CGTGTCGACCTTTGGTTGAACAGTCTTCACTGTTTAGCTTTCCCGAGACA
CGTCTTGACAACCTCCTGCTCCTGCACGAGAGAGGGGTAAACCACACGGG
TGTCAATTTCATCATGCGTAGCGCTTGGGTTGTTTTTTCGCCCGCCTACC
TTCTCTTTCTGCCAGTGGTAGAGTACAGTTTAAGTGGGCCATTGATTGCG
TGACGCACCGACCGTAATCATTCGGGGACTTTCGATCGCTTGGCAAGGGG
CAAGATCCAAGATCCACCGCCTGCTAAGAGCTCCCATCGGTCACTCTGCT
TGCCAGGCTGCTGCCAATGGCCACCTAGAGACCGTGAAATGGCTTCACGG
TAATGGCACTGAAGGCTGCACCAAGGTGAGCCAAGAACCCTCCTCCTTAG
GCAGTGTACGAAGAACGGTGGAAAGGAAACTGAGCACGGATGTTTTTTCG
TGAAAAAGGATATAGACGTTTCAGCGGCAACCTGGTACAGTATCTAATTG
CAGCACTGTGCTGTACATATCTGCCGCATAAGAAGACGAGAGGAAGATAG
GCCCACAGTCATTAATACCTTCAACGTTGATATCTAGGTCCAAGAAGGAC
CGCATGCTGTATGTACAAAATGACAAAAGCCCTGACTCCTTCTCCCTCTC
CTTGTCTATGTACTTGGTGGCGTGGCCGTGCCAATTCTCACAGGATGCAA
TGGACTCTGCGGCAGGCAATGGGCACCTGGAGGTGGTGAAGTGGCTGCAC
CAAAACAGATCTGAGGGGTGTTCTTGGCAGGTTAGAGGGGCAGAGCAAAT
AAGACCGATGATGGTGCTTCGAAGCCACTAACCCTAACCCTAATGATAAG
GATCTATCAATCTTTAACTTGAAGTCACGATACAGAAGCAGAAACAAAAA
AAAAGAGGCAGACAGCGGCAAGAAATTCGTACGTGTCTCCAGATGGGTGA
AGTGTCTCGACTTTTTCTTTTGTCTCCAGGGCATTTTTACATGTCTCCAG
GGCAAGCGCGAATGCCTGCAGTGCACAAGCATCTGACCTCTGCAGGTCAG
ACAACCCAAGTCTTCTCTCCTCCCCCTAACCCTAACCCTAACATTTTGCC
CCAGCAGCAGCAGTTGTGCTCCTACAGCAGTTACCCATAACTGCACTGCC
TCTAAACCTCGGGGCATTCTTCCCCTAATCCCATGCCCAGGCCATGGATG
AGGCGGCGACCAATGGGCACCTTGATGTGGTGTCATTCCTCCACTATGCA
TCGAAAGAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9979:111..2220-

>mRNA_D-mesarthrocarpus_Contig9979.1.4 ID=mRNA_D-mesarthrocarpus_Contig9979.1.4|Name=mRNA_D-mesarthrocarpus_Contig9979.1.4|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1224bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9979:111..2220- (Discosporangium mesarthrocarpum MT17_79)
AAGGTTATCTATTATCGGGTGTGCGACAGGCGGGACCGTAGTCTTCTGCA
TCAAAGTACAAACCATTCGATGAGAAGGACGCGGTGGAGGGGTTTGACAA
AACGGCTGAGGGGCTTACGGGGGTGGCGGGGGTGGAGAGGGTGGAAAGGG
TGTCCCAAGCACCGGAAGCGTCAGCCATGTGCAGATCCAGTACAGCCTGT
CTCGGACGAGAGTTGGGGATTTGAAGAAGAAAAAAATGTAGAGAGGGGGG
CGAAAGGTCTCTCAGCCTTCGATGCTTGTATCCTGAACTGGCGCGTCAGG
GATTCTATCGTCTCATATCAAGCTGGTGTCAAGTTCAGACTCTTCAAGGA
AGGAGATGTGGCTGCTGCCCGTGGCCACGTGGGGCTTATCGAGCTCAAGC
GGAAACTAGGTCTTGTTGAAATCGAAGGTGAAAGGCCGAAGTCCCAGCTA
GGCAATGAAGGTGGTCCTGTTCCAGCTGACGCGGTACCCTCGGCGATTAG
GGAAGATTCCACGGGAGGCACGAGTAGGGTGATCCTTCCCCCGCACAACA
TTTGGCATGATCAAGAGAGGGCTGGAGACTATCTGGCGAGGGGCCCCCCG
CCTCTTGGTTCGGAACCACTTGTGTTCTCCTCATCCCCCCTCGACTGTGC
CGCAGCCGGAGGAAACCTGGAAGCCATGGAGTATCTTTTATCAGCAGGCT
TAGAGGAATGCTCTTCCGACGCCTTTGACCTGTCCGCGGCTCGGGGGCGG
GTGGACATACTGGAGTGGTTGCACGGGAACCTTCCTGAATGCACCGGCAC
TTACCTGGCCATGAATGGGGCTGCTGCCAATGGCCACCTAGAGACCGTGA
AATGGCTTCACGGTAATGGCACTGAAGGCTGCACCAAGGTGAGCCAAGAA
CCCTCCTCCTTAGGCAGTGTACGAAGAACGGTGGAAAGGAAACTGAGCAC
GGATGTTTTTTCGTCCAAGAAGGACCGCATGCTGTATGTACAAAATGACA
AAAGCCCTGACTCCTTCTCCCTCTCCTTGTCTATGTACTTGGTGGCGTGG
CCGTGCCAATTCTCACAGGATGCAATGGACTCTGCGGCAGGCAATGGGCA
CCTGGAGGTGGTGAAGTGGCTGCACCAAAACAGATCTGAGGGGTGTTCTT
GGCAGGCCATGGATGAGGCGGCGACCAATGGGCACCTTGATGTGGTGTCA
TTCCTCCACTATGCATCGAAAGAG
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