mRNA_D-mesarthrocarpus_Contig9976.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9976.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9976.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: D7FLK7_ECTSI (D-3-phosphoglycerate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLK7_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 4.320e-45
Identity = 77/99 (77.78%), Postives = 90/99 (90.91%), Query Frame = 1
Query:   10 MTGTCFGTDIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNVMQVT 306
            MTGTCFGTD R+VDVDGL+IDF+PSG++L+FNNPDSPGMLRAVA +LG  GINIASFALGRVRTGG AMSCLNLDT C++ +L E+RKIPDIRNV+Q +
Sbjct:  470 MTGTCFGTDTRVVDVDGLEIDFNPSGHMLMFNNPDSPGMLRAVAAILGDQGINIASFALGRVRTGGVAMSCLNLDTPCTEGMLEEIRKIPDIRNVVQAS 568          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: A0A835YXH9_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.560e-31
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 1
Query:   10 MTGTCFGTDIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNVMQV 303
            + GTCFG ++R+  +D LDIDF P+GN++  NNPD+PGMLR V+  L + G+NIA+FALGRVR GGTAMSC+++D    + ILA++R IP +RNV+ V
Sbjct:  457 VAGTCFGRELRVTSIDSLDIDFLPTGNMIFLNNPDTPGMLRQVSSALARGGVNIANFALGRVRQGGTAMSCISVDGPVPENILADLRAIPGVRNVIPV 554          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: A0A7S2W8W5_9STRA (D-3-phosphoglycerate dehydrogenase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8W5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.170e-20
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   10 MTGTCF-GTDIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNVMQVT 306
            +TGT F G+++RIVDVDG  +DF P GN L FNN D PG+++ VA++LGK GINI  F LGR   G  A+  +  D   ++ ++A++  +P++ NV  VT
Sbjct:  468 ITGTVFKGSELRIVDVDGYAVDFHPKGNCLFFNNEDRPGVVKNVAELLGKHGINIGDFTLGRKLAGDVALGIVATDQPVTNELVAQLETLPEVFNVAAVT 567          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: A0A2V7V5K6_9BACT (ACT domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7V5K6_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 5.820e-19
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    4 LQMTGTCFGTD-IRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIR 288
            L + GT FG + +R+VDVDG+++D  P GN+LL  N D+PG++  V  +LGK GINIA   LGR    G A+  + +D     A+L E+ +IP +R
Sbjct:   18 LSVAGTLFGRNHMRLVDVDGVEVDTIPQGNILLVKNEDTPGIVGKVGSLLGKHGINIARMGLGRKPGSGRAVMLIEIDNDAPPAVLEELPRIPGVR 113          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: A0A1F2QXW6_9BACT (D-3-phosphoglycerate dehydrogenase n=1 Tax=Acidobacteria bacterium RBG_16_70_10 TaxID=1797174 RepID=A0A1F2QXW6_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 2.570e-17
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    4 LQMTGTCFGTD-IRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIR 288
            LQ+ GT FG D +R+VDVDG+++D  P GN+LL  N D+PG++  V  +LG  GINIA   LGR    G A+  + +D+   +A+LAE+ ++  IR
Sbjct:  425 LQVAGTIFGRDHMRLVDVDGVEVDTIPRGNILLVKNEDTPGIVGRVGTLLGSHGINIARMGLGRKPGSGRAVMLIEVDSEVPEAVLAELPRVAGIR 520          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: A0A2N6BBS9_9DELT (Phosphoglycerate dehydrogenase (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2N6BBS9_9DELT)

HSP 1 Score: 75.9 bits (185), Expect = 1.560e-15
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   10 MTGTCFG-TDIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNVMQV 303
            + G  FG  + R+V++DG+DI+  P GN+L+  N D PG++ A+   LG+ GINI     GR   GG A++ +N+D+   DA L  +  + ++ N+ +V
Sbjct:   17 LAGAVFGKNEPRVVEIDGIDIEAMPEGNMLILWNNDRPGLVGAIGTTLGERGINIGQLQFGRSAPGGDAITVINVDSEPDDATLEALGALDNVNNLHKV 115          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: A0A512AMP4_9SPHN (D-3-phosphoglycerate dehydrogenase n=37 Tax=Sphingomonadales TaxID=204457 RepID=A0A512AMP4_9SPHN)

HSP 1 Score: 80.5 bits (197), Expect = 2.030e-15
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    7 QMTGTCFGT-DIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNV 294
             + GT FG  D R+V++ G+ I+   +G++L   N D+PG + ++  +LGK+GINI +F LGR   GG A+  L++D+  ++A+LAE R +P +R V
Sbjct:  426 SVAGTLFGNGDPRLVEIFGIGIEADLAGDMLYIVNTDAPGFIGSIGTLLGKAGINIGTFHLGRREAGGEAVLLLSVDSPVTEAVLAEARTVPGVRTV 522          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: UPI0019F5611A (Phosphoglycerate dehydrogenase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F5611A)

HSP 1 Score: 80.5 bits (197), Expect = 2.030e-15
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    7 QMTGTCFG-TDIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNVMQVT 306
             + GT F   + RIV +DG+D++  P+GN+L   N D PG++  V  +LG + +NIASF LGR      A+S +N+D   SD  LA +R + DI  V QVT
Sbjct:  427 SVAGTLFHHKEPRIVQIDGIDVETIPTGNILFIYNEDKPGIIGNVGSLLGDANVNIASFQLGRDLDKKRAVSMVNVDEKVSDKTLAHLRDLADILEVKQVT 527          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: A0A7X8A9M8_9BACT (D-3-phosphoglycerate dehydrogenase n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A7X8A9M8_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 2.770e-15
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    4 LQMTGTCFGT-DIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNVMQVT 306
            + + GT F   D RIV +D   ++  P G +L+  N D PG++  +   LG +GINIA    GR   GG A S +N+DT  +DA+L ++RK+P+I  V  VT
Sbjct:  424 VSVEGTLFSKKDPRIVKIDHYTVEILPEGPMLIMENNDKPGVIGNIGATLGNAGINIARMHFGRESIGGKAFSVVNIDTPATDAVLDQIRKLPNILRVRAVT 525          
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Match: A0A2E0W425_9BACT (D-3-phosphoglycerate dehydrogenase n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A2E0W425_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 5.170e-15
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   10 MTGTCFGTDIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKSGINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNVMQV 303
            +TGT     +RIV +DG +++F P GNLL++NN D PG+L  V+ VL  + INIA   LGR   G  A++ ++ D    +  +  + K+  + NVM V
Sbjct:  426 VTGTVLDESLRIVRIDGFNLEFKPEGNLLIYNNLDKPGVLSKVSSVLSSNNINIAGLTLGRTGLGKEAITVISCDEEIDNKTIESVAKLQFVENVMVV 523          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9976.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK7_ECTSI4.320e-4577.78D-3-phosphoglycerate dehydrogenase n=2 Tax=Ectocar... [more]
A0A835YXH9_9STRA2.560e-3156.12D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribone... [more]
A0A7S2W8W5_9STRA1.170e-2046.00D-3-phosphoglycerate dehydrogenase n=2 Tax=Rhizoch... [more]
A0A2V7V5K6_9BACT5.820e-1943.75ACT domain-containing protein n=1 Tax=Acidobacteri... [more]
A0A1F2QXW6_9BACT2.570e-1744.79D-3-phosphoglycerate dehydrogenase n=1 Tax=Acidoba... [more]
A0A2N6BBS9_9DELT1.560e-1536.36Phosphoglycerate dehydrogenase (Fragment) n=1 Tax=... [more]
A0A512AMP4_9SPHN2.030e-1540.21D-3-phosphoglycerate dehydrogenase n=37 Tax=Sphing... [more]
UPI0019F5611A2.030e-1542.57Phosphoglycerate dehydrogenase n=1 Tax=Proteobacte... [more]
A0A7X8A9M8_9BACT2.770e-1540.20D-3-phosphoglycerate dehydrogenase n=1 Tax=Nitrosp... [more]
A0A2E0W425_9BACT5.170e-1538.78D-3-phosphoglycerate dehydrogenase n=1 Tax=Ignavib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9976contigD-mesarthrocarpus_Contig9976:651..1545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLK7
Preferred namePHGDH
PFAMs2-Hacid_dh,2-Hacid_dh_C
Model size327
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00031,RC00036
KEGG koko:K00058,ko:K00831
KEGG ReactionR01513,R04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004617,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006541,GO:0006544,GO:0006563,GO:0006564,GO:0006566,GO:0006790,GO:0006805,GO:0006807,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008652,GO:0009055,GO:0009058,GO:0009064,GO:0009066,GO:0009069,GO:0009070,GO:0009410,GO:0009448,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010001,GO:0010468,GO:0016043,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0019222,GO:0019530,GO:0019694,GO:0019752,GO:0021510,GO:0021782,GO:0021915,GO:0022008,GO:0022402,GO:0022900,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032787,GO:0035295,GO:0042063,GO:0042133,GO:0042221,GO:0043009,GO:0043209,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051716,GO:0055114,GO:0060255,GO:0060322,GO:0060429,GO:0065007,GO:0065008,GO:0070314,GO:0070887,GO:0071466,GO:0071704,GO:0071840,GO:0120036,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons2
Evalue1.17e-45
EggNOG OGsCOG0111@1|root,KOG0068@2759|Eukaryota
Ec32 ortholog descriptionPhosphoglycerate dehydrogenase / Phosphoserine aminotransferase
Ec32 orthologEc-17_000820.1
EC1.1.1.399,1.1.1.95,2.6.1.52
Descriptionphosphoglycerate dehydrogenase activity
Cds size318
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.2881036-CDS-D-mesarthrocarpus_Contig9976:650..8151680791147.2881036-CDS-D-mesarthrocarpus_Contig9976:650..815Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9976 651..815 -
1680791147.3053823-CDS-D-mesarthrocarpus_Contig9976:1383..15361680791147.3053823-CDS-D-mesarthrocarpus_Contig9976:1383..1536Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9976 1384..1536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.3237371-UTR-D-mesarthrocarpus_Contig9976:1536..15451680791147.3237371-UTR-D-mesarthrocarpus_Contig9976:1536..1545Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9976 1537..1545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9976.2.1prot_D-mesarthrocarpus_Contig9976.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9976 651..1536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9976.2.1

>prot_D-mesarthrocarpus_Contig9976.2.1 ID=prot_D-mesarthrocarpus_Contig9976.2.1|Name=mRNA_D-mesarthrocarpus_Contig9976.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=106bp
MTGTCFGTDIRIVDVDGLDIDFSPSGNLLLFNNPDSPGMLRAVADVLGKS
GINIASFALGRVRTGGTAMSCLNLDTMCSDAILAEMRKIPDIRNVMQVTG
VGVRG*
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mRNA from alignment at D-mesarthrocarpus_Contig9976:651..1545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9976.2.1 ID=mRNA_D-mesarthrocarpus_Contig9976.2.1|Name=mRNA_D-mesarthrocarpus_Contig9976.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=895bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9976:651..1545- (Discosporangium mesarthrocarpum MT17_79)
TGCCTGCAGATGACGGGAACATGCTTTGGCACAGACATCCGCATTGTGGA TGTTGACGGCCTGGACATTGACTTCAGCCCCTCCGGCAACCTACTCCTCT TCAACAATCCTGACTCTCCAGGGATGCTCAGGGCTGTGGCAGATGTGCTG GGCAAGAGCGGGGTGAGCGGGCATGATCAAGGGTAGGGCTGTGGTTGTGT CTGGGGTTTGGTTAGTTTCTAGGGTTGGGTTGAGTTGAATTGGGTTGGGG TAAGAGGTGTTAGGGTGGGAGTATTGTAGTAGCATCACTGTGCACATGCA CTGTGCATGAGCAAAAAAAATAGTTCCTGCCAAGAATGCCCAGCCTCACT CTCTTGCCCTAGCTCTAGCCCATACCACAAACCTGGCCCGACCCAAGCCT CGACCCTTTCAAGTCTGCCACGAGATCTGCACCACCTGCTCTACATGGCC TTCCCTCCCCCTTACTCTTTCCTACCCAATGCGTAACCCTAACCCTAACC CTAACCCTAACCCTAACCCTAACCCTCTTTTACCCAGTGCTTAACCCTAA CCCCAACCCAAGCCCCCTCTCTAATCCCCGGATTGCTGGTATGACCCTTT GCCCAAAACCTGACACCATGCTTAAAACCGGCCCCTTGCCCAGCACCAGC TCAACGTCGCCAGCTTTGTCCCAGGGCCGCTTGGCCCTAACCCTTACCCT GCCTAACCTTAACCCCCTCCCTGTCACCAGATCAACATCGCCAGCTTTGC CCTGGGTCGTGTTCGGACGGGTGGTACGGCCATGAGCTGCCTCAACCTGG ACACCATGTGCTCTGATGCCATTTTGGCAGAGATGCGGAAGATACCGGAC ATCCGGAACGTGATGCAGGTAACGGGGGTTGGGGTCAGGGGTTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9976:651..1545-

>mRNA_D-mesarthrocarpus_Contig9976.2.1 ID=mRNA_D-mesarthrocarpus_Contig9976.2.1|Name=mRNA_D-mesarthrocarpus_Contig9976.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=318bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9976:651..1545- (Discosporangium mesarthrocarpum MT17_79)
ATGACGGGAACATGCTTTGGCACAGACATCCGCATTGTGGATGTTGACGG
CCTGGACATTGACTTCAGCCCCTCCGGCAACCTACTCCTCTTCAACAATC
CTGACTCTCCAGGGATGCTCAGGGCTGTGGCAGATGTGCTGGGCAAGAGC
GGGATCAACATCGCCAGCTTTGCCCTGGGTCGTGTTCGGACGGGTGGTAC
GGCCATGAGCTGCCTCAACCTGGACACCATGTGCTCTGATGCCATTTTGG
CAGAGATGCGGAAGATACCGGACATCCGGAACGTGATGCAGGTAACGGGG
GTTGGGGTCAGGGGTTAG
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