mRNA_D-mesarthrocarpus_Contig9970.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9970.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9970.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: A0A6H5K8W7_9PHAE (EGF-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8W7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.950e-42
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDGLPLSTVETSF--------SLRSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTALI 249
            G+Q+LLEVEWRPC  GCTP+LDGLPLST++T F        + RSYVQQIQ+ADYESYVCGGRGKCDY TG+C CFTGYYGLHC+TQTALI
Sbjct:  353 GNQHLLEVEWRPCGDGCTPKLDGLPLSTIDTQFDNLPYTIGAHRSYVQQIQSADYESYVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 443          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: A0A482STS7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STS7_9ARCH)

HSP 1 Score: 93.6 bits (231), Expect = 1.930e-22
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDGLPLSTVETSFSL-RSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTAL 246
            G Q+L+ VE   C  GCTP++DGLP   V+T  ++  S V + Q AD+ SY CG RGKCDY TG C+CFTGY G +C TQT L
Sbjct:   77 GPQHLITVEDYECGAGCTPKIDGLP---VQTRLNMPMSNVTESQLADFNSYECGRRGKCDYATGLCKCFTGYTGDNCNTQTTL 156          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: A0A7S3BCW5_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BCW5_9VIRI)

HSP 1 Score: 87.8 bits (216), Expect = 8.110e-21
Identity = 45/94 (47.87%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDGLPLSTVET-----------SFSLRSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTALI 249
            G QNLLEV    C  GCTP LDGL  + V             +   +S V++  AADY S+ CG RGKCD++TG C CF GY G  C T TALI
Sbjct:    8 GRQNLLEVNVNSCGSGCTPMLDGLEYTLVSAVNATTNAASKLAQGTKSSVKETTAADYNSFECGRRGKCDFDTGVCACFEGYTGEACTTLTALI 101          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: C4B7Q7_OCHDN (Tubular mastigoneme protein n=1 Tax=Ochromonas danica TaxID=2986 RepID=C4B7Q7_OCHDN)

HSP 1 Score: 90.1 bits (222), Expect = 1.540e-19
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDGLPLSTVETSFSLRSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTAL 246
            G QNLL VE   CS GCTP++ G+ + T+       S + ++ AADY S+ CG RGKCDY TG C CFTGY G +C T T L
Sbjct:  286 GKQNLLVVESYECSDGCTPKITGIDVQTLYNQ--KHSNISEVLAADYYSFECGRRGKCDYNTGLCNCFTGYTGDNCNTMTTL 365          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: F0YDW6_AURAN (EGF-like domain-containing protein n=3 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDW6_AURAN)

HSP 1 Score: 90.1 bits (222), Expect = 1.860e-19
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDGLPLSTVETSFSLRSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTALI 249
            G Q LLEVE   C  GCTP+L+      V +   + S+V++   ADY SY CG RGKCDY TG+C+CF GY G  CQ QTALI
Sbjct:  309 GPQYLLEVETDECLDGCTPKLENP--GNVTSMPDIFSFVKEQVTADYNSYECGRRGKCDYSTGECECFEGYMGDRCQMQTALI 389          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: A0A6U3PT88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3PT88_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.220e-19
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDGLPLSTVETSFSLRSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTALI 249
            G QNLL +E + C  GCTP+L+G+ L  +        ++ +   AD+ +Y CG RGKCDYETG+C+CF GY G  C TQTAL+
Sbjct:  428 GPQNLLTIETKECQDGCTPKLNGIHL--IPFGPGNGGFIVEAVKADFNNYECGRRGKCDYETGECECFEGYTGEACSTQTALV 508          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: A0A835ZF98_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF98_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.590e-18
Identity = 45/94 (47.87%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDG-----LPLSTVETSFSL-------RSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTAL 246
            G QNLLEVEW+ C  GCTPRL G     L L+   T+ S          Y+         +Y CGGRGKCDY +G+CQCF G+ GL C  QTAL
Sbjct:  334 GKQNLLEVEWKECLEGCTPRLAGIQESALALTNARTTGSYGYARVIDTKYLSSTATHVNTAYTCGGRGKCDYTSGECQCFDGFVGLACGEQTAL 427          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: A0A7S0L985_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L985_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 2.240e-17
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDGLPLSTVETSFSLRSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTALI 249
            G QNLL V    C  GC+P+L GL L  +ET       + ++  AD+ SY CG RGKCDY TGQCQCF GY GL C T   L+
Sbjct:  302 GPQNLLTVRSYLCGDGCSPKLVGLELE-LETQT-----ITELTPADFNSYECGRRGKCDYTTGQCQCFAGYTGLSCSTIACLV 378          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: A0A7S3JQM4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQM4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.880e-17
Identity = 44/97 (45.36%), Postives = 51/97 (52.58%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCSVGCTPRLDGLPLSTVETSFSLRSY--------------VQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTALI 249
            G QNLLEV    C  GCTP L+        T+ ++  Y              V +   ADY S+ CG RGKCDY TG C+CF GY G  CQTQTALI
Sbjct:  351 GPQNLLEVVADTCGDGCTPMLNNSVNLKTATNITVEDYIGTKDYITDDLFSFVAEDVRADYNSFECGRRGKCDYSTGLCECFEGYTGDRCQTQTALI 447          
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Match: A0A7S1UKF7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKF7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.830e-16
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 GDQNLLEVEWRPCS---------VGCTPRLDGLPLSTVET----SFSLRSYVQQIQAADYESYVCGGRGKCDYETGQCQCFTGYYGLHCQTQTALI 249
            G Q+LLEV    C           GC  ++ G  +    T    + ++ S+V+Q QAAD +SY CG RGKCDY+TG CQCF+GY G HC+  TAL+
Sbjct:  359 GTQHLLEVLTEECGEQFEYPGAQAGCAQQMYGTTIPQFATDDGATNAVYSHVKQSQAADLQSYECGRRGKCDYDTGICQCFSGYKGAHCEDLTALV 454          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9970.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8W7_9PHAE1.950e-4274.73EGF-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A482STS7_9ARCH1.930e-2254.22Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3BCW5_9VIRI8.110e-2147.87Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
C4B7Q7_OCHDN1.540e-1951.22Tubular mastigoneme protein n=1 Tax=Ochromonas dan... [more]
F0YDW6_AURAN1.860e-1953.01EGF-like domain-containing protein n=3 Tax=Aureoco... [more]
A0A6U3PT88_9STRA2.220e-1948.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZF98_9STRA1.590e-1847.87EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S0L985_9EUKA2.240e-1750.60Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3JQM4_9STRA7.880e-1745.36Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1UKF7_9STRA2.830e-1643.75Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9970contigD-mesarthrocarpus_Contig9970:1141..2265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LDD6
PFAMsEGF_2
Model size252
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.68e-42
EggNOG OGsKOG1225@1|root,KOG1225@2759|Eukaryota
Ec32 ortholog descriptionSecreted EGF-like domain protein OCM2
Ec32 orthologEc-25_001650.1
Descriptionregulation of canonical Wnt signaling pathway involved in osteoblast differentiation
Cds size252
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.8083978-CDS-D-mesarthrocarpus_Contig9970:1140..12631680791146.8083978-CDS-D-mesarthrocarpus_Contig9970:1140..1263Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9970 1141..1263 -
1680791146.8233585-CDS-D-mesarthrocarpus_Contig9970:2136..22651680791146.8233585-CDS-D-mesarthrocarpus_Contig9970:2136..2265Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9970 2137..2265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9970.2.1prot_D-mesarthrocarpus_Contig9970.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9970 1141..2265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9970.2.1

>prot_D-mesarthrocarpus_Contig9970.2.1 ID=prot_D-mesarthrocarpus_Contig9970.2.1|Name=mRNA_D-mesarthrocarpus_Contig9970.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=84bp
GDQNLLEVEWRPCSVGCTPRLDGLPLSTVETSFSLRSYVQQIQAADYESY
VCGGRGKCDYETGQCQCFTGYYGLHCQTQTALI*
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mRNA from alignment at D-mesarthrocarpus_Contig9970:1141..2265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9970.2.1 ID=mRNA_D-mesarthrocarpus_Contig9970.2.1|Name=mRNA_D-mesarthrocarpus_Contig9970.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1125bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9970:1141..2265- (Discosporangium mesarthrocarpum MT17_79)
GGGGACCAGAACCTGCTCGAGGTGGAGTGGCGCCCCTGCAGTGTCGGGTG CACACCACGGCTCGATGGCCTCCCGCTGTCCACTGTCGAGACCTCCTTCT CTCTGCGTTCCTACGTGCAGCAGATCCAGGTGACGTTTGGTTACTATCCC TTCCTTAGCTGTGCCTTTAGCTTTGCCTTCAGATTTGACATTAATTTTGC CTCCAGCTTTGCCTGCAGCTTTGCTGTTTGCTTTGCTGTTAGCATTGCCG TTAGCGTTGCCCTTGCCATTGCCCTCGCTTTGTCTTGACGTTGGTCTTCA CCTTTGCCTTGGTTCAACTCATGAGATAAAAATATGTTTCAAAATCCAAA GTGCTTAGCGGCAGTAAAAAAACCATGTATTGGGGTATTTATGTACTGTA GTAGGGTGGTGGCCAAAAACGATGATTTTTTTCCCCTTCATGACCCCTGA ACCTAAGTTAGAAACCCTGGACTAGGGCCAGGGTTAAGCCTAGTTCGATG ATATTTAAAACGGCGCTCCTCTCCTCATACCCCCCCCCCCTCCCCTATGC GTGATGTGCCTTCCGATATACCTAACCCTAACCCTAACCATATCCATAAA CATAGCCCTGAACCCTAACCCTAACCCATATGCTAAAGTTAATCCTGACC CTGACCCTAACCCTAACCCGAACCCTAACCCATATGCGAATGTTAACCCT GACCCTGACCCTAACCCTAACCCTAACCCAAACCCTAACCCTGACCCTGA CCCTGACCCTGACCCTGACCCTGACCCTGACCCTGACCCTAACCCTAACC CTAACCCGAACCCAAACCCTGACCCTGACCCTGACCCTAACCCTAACCCT AACCCTAACCCTAACCCATATTCTAACGTTATCCCTGACCCTGACCCTGA CCCTGACCCTGACCCCTGGCCCTAACCCGGGCCCTTAACTGTAACTGTGA CTGTGCCTGTACCTGCAACTGTAACTGTAACTGTTGCCGTAACCGTAACC AGGCGGCAGACTACGAGTCCTACGTGTGTGGGGGGCGGGGCAAGTGCGAC TATGAGACTGGCCAGTGCCAGTGCTTCACGGGCTACTACGGCCTCCACTG CCAGACCCAGACCGCCCTCATCTAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9970:1141..2265-

>mRNA_D-mesarthrocarpus_Contig9970.2.1 ID=mRNA_D-mesarthrocarpus_Contig9970.2.1|Name=mRNA_D-mesarthrocarpus_Contig9970.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=252bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9970:1141..2265- (Discosporangium mesarthrocarpum MT17_79)
GGGGACCAGAACCTGCTCGAGGTGGAGTGGCGCCCCTGCAGTGTCGGGTG
CACACCACGGCTCGATGGCCTCCCGCTGTCCACTGTCGAGACCTCCTTCT
CTCTGCGTTCCTACGTGCAGCAGATCCAGGCGGCAGACTACGAGTCCTAC
GTGTGTGGGGGGCGGGGCAAGTGCGACTATGAGACTGGCCAGTGCCAGTG
CTTCACGGGCTACTACGGCCTCCACTGCCAGACCCAGACCGCCCTCATCT
AA
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