mRNA_D-mesarthrocarpus_Contig997.8.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig997.8.1
Unique NamemRNA_D-mesarthrocarpus_Contig997.8.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig997.8.1 vs. uniprot
Match: A0A151ZJ49_9MYCE (Conserved oligomeric Golgi complex subunit 7 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZJ49_9MYCE)

HSP 1 Score: 63.5 bits (153), Expect = 4.970e-8
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   19 EEDDRASHFCNEWLSCVAMATVGILIARVLEIPHMSRKGSEHLSVDMGYLFNVISALDLTPHPLLTHLGRVVRLGR 246
            E++D      ++W+S VA +T  + +  +++IP +S  GS+ LS D+GYLFNV SALD+TP  LL    + + + R
Sbjct:  713 EDNDEYEGISHQWISLVAKSTEKLYLQSIVDIPQLSDMGSQQLSNDIGYLFNVFSALDVTPDTLLQKTQQFITMDR 788
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BLAST of mRNA_D-mesarthrocarpus_Contig997.8.1 vs. uniprot
Match: UPI00064489F9 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064489F9)

HSP 1 Score: 56.6 bits (135), Expect = 1.050e-5
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:   13 EGEEDDRASHFCNEWLSCVAMATVGILIARVLEIPHMSRKGSEHLSVDMGYLFNVISALDLTPHPLLTHLGRVVRLGRE 249
            E E  D      ++W++ VA AT  + +  ++EI  +S  G + LS D+GYLFNV+SAL ++  PLL+   ++V   +E
Sbjct:  625 EDENIDEMDGIAHQWMTLVASATEKLYLQSIVEISMLSEFGCQQLSNDIGYLFNVLSALGVSADPLLSRTQQLVSTPKE 703
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BLAST of mRNA_D-mesarthrocarpus_Contig997.8.1 vs. uniprot
Match: A0A433PSZ8_9FUNG (Conserved oligomeric Golgi complex subunit 7 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PSZ8_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 2.760e-5
Identity = 27/79 (34.18%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   55 WLSCVAMATVGILIARVLEIPHMSRKGSEHLSVDMGYLFNVISALDLTPHPLLTHLGRVVRLGREDALARLEDPAAGND 291
            W + ++  T+  L+ ++L IP +S +G+  L+ D+GYL NV++AL++ P P L  + RV+ +   +   RL +  AG D
Sbjct:  988 WYTSLSRGTMHALLDQILSIPSLSPQGARQLAADIGYLINVLAALEIEPVPDLARVHRVLGMDDTEVFRRLRN-RAGED 1065
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BLAST of mRNA_D-mesarthrocarpus_Contig997.8.1 vs. uniprot
Match: A0A433QQS5_9FUNG (Conserved oligomeric Golgi complex subunit 7 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QQS5_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 2.770e-5
Identity = 26/82 (31.71%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   34 ASHFCNEWLSCVAMATVGILIARVLEIPHMSRKGSEHLSVDMGYLFNVISALDLTPHPLLTHLGRVVRLGREDALARLEDPA 279
            A    + W + ++  T+  L+ ++L +P +S +G+  L+ D+GYL NV++AL++ P P LT + RV+ +   +   RL   A
Sbjct:  984 AEEVTHLWYTSLSRGTMYALLDQILRVPSLSPQGARQLATDIGYLTNVLAALEIEPVPDLTRVHRVLGMDDTEVFRRLRSRA 1065
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BLAST of mRNA_D-mesarthrocarpus_Contig997.8.1 vs. uniprot
Match: A0A1X7TAG0_AMPQE (Conserved oligomeric Golgi complex subunit 7 n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TAG0_AMPQE)

HSP 1 Score: 54.7 bits (130), Expect = 3.770e-5
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   10 DEGEEDDRASHFCNEWLSCVAMATVGILIARVLEIPHMSRKGSEHLSVDMGYLFNVISALDLTPHPLLTHLGRVVRLGREDALARLED 273
            D+GE  D +    + WL  +A  T+   +  +L+IP ++   +  LS D+GYL NV++ALD  P P LT L ++++  +E A  R +D
Sbjct:  305 DDGENRDLS--LSDMWLDAIARGTMETYVESILKIPRLTDAAALQLSTDIGYLCNVLAALDQPPIPALTALEKLLKSDKE-AFPRFKD 389
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig997.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A151ZJ49_9MYCE4.970e-839.47Conserved oligomeric Golgi complex subunit 7 n=1 T... [more]
UPI00064489F91.050e-536.71hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A433PSZ8_9FUNG2.760e-534.18Conserved oligomeric Golgi complex subunit 7 n=1 T... [more]
A0A433QQS5_9FUNG2.770e-531.71Conserved oligomeric Golgi complex subunit 7 n=1 T... [more]
A0A1X7TAG0_AMPQE3.770e-535.23Conserved oligomeric Golgi complex subunit 7 n=3 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig997contigD-mesarthrocarpus_Contig997:21452..23961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUF5
Preferred nameCOG7
PFAMsCOG7
Model size691
Max annot lvl2759|Eukaryota
KEGG koko:K10878,ko:K17586,ko:K20294
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0000916,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0005802,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007010,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030029,GO:0030036,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032504,GO:0032506,GO:0032588,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034067,GO:0034613,GO:0034645,GO:0036063,GO:0036211,GO:0036213,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048609,GO:0050821,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061640,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046
Exons3
Evalue2.48e-14
EggNOG OGsKOG4182@1|root,KOG4182@2759|Eukaryota
Descriptionretrograde vesicle-mediated transport, Golgi to ER
Cds size294
COG categoryS
BRITEko00000,ko00001,ko01009,ko03400,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.7224612-UTR-D-mesarthrocarpus_Contig997:21451..217761680791146.7224612-UTR-D-mesarthrocarpus_Contig997:21451..21776Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig997 21452..21776 -
1680791146.7752278-UTR-D-mesarthrocarpus_Contig997:23889..239611680791146.7752278-UTR-D-mesarthrocarpus_Contig997:23889..23961Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig997 23890..23961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.7345245-CDS-D-mesarthrocarpus_Contig997:21776..218591680791146.7345245-CDS-D-mesarthrocarpus_Contig997:21776..21859Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig997 21777..21859 -
1680791146.7485132-CDS-D-mesarthrocarpus_Contig997:22907..230881680791146.7485132-CDS-D-mesarthrocarpus_Contig997:22907..23088Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig997 22908..23088 -
1680791146.7622972-CDS-D-mesarthrocarpus_Contig997:23859..238891680791146.7622972-CDS-D-mesarthrocarpus_Contig997:23859..23889Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig997 23860..23889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig997.8.1prot_D-mesarthrocarpus_Contig997.8.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig997 21777..23889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig997.8.1

>prot_D-mesarthrocarpus_Contig997.8.1 ID=prot_D-mesarthrocarpus_Contig997.8.1|Name=mRNA_D-mesarthrocarpus_Contig997.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=98bp
MATVGILIARVLEIPHMSRKGSEHLSVDMGYLFNVISALDLTPHPLLTHL
GRVVRLGREDALARLEDPAAGNDRVLAVVLKIEKQLASARGLLPSTS*
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mRNA from alignment at D-mesarthrocarpus_Contig997:21452..23961-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig997.8.1 ID=mRNA_D-mesarthrocarpus_Contig997.8.1|Name=mRNA_D-mesarthrocarpus_Contig997.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2510bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig997:21452..23961- (Discosporangium mesarthrocarpum MT17_79)
GGGGAGGCGGATGAAGGAGAGGAGGATGACAGGGCGTCTCACTTCTGCAA
TGAGTGGCTGTCCTGTGTGGCCATGGCGACGGTTGGGATACTCATTGCCC
GGGTAGGGCCATGGGGTTACGGTTGGGGTTGGAGTTAGGGTTAGGAATAG
GAAGGTGGGGTTGGGGTTGGGGTTGGCGGTTGAGATTTGGTGTTGAGGAT
CTGTAGCATGTGGCTTTGTGGCCCAGGAATGACAGGTAGGGATGGAGCTT
CTTTGCATTTCATATTTGAGGGTTGGGATAATTGGGCACCTTGCCTTGCT
CTGATGCACTTTTTGACAATAAAGCAAAAAGGAACGAACACAGTGTAAGT
GCTTTCAAGGAGCAATTCAAGTTCCCGCAGAGTACCTACAAATTATCAGG
GTTAGGGCGAGGGGCAGGGTTAAGGTTAGATGGTGTGGTACCTTCCAGGT
GGTTGAGATAACCTATAGTGTAGGATGAGTCTAGCACGAATAATTCTTGA
AGCACAACTAAGAAGCACGGAGAATAAATTAAAGGAGTGTGCATGCCCAT
TGGGAGTAGACGCCAATACTGGTTTGTGCTGGGTGAAGCTCCAAGGGTGA
TCTCTCTAAACCTGACTTGTGTGCATGCCTTCCCACCGTGTGGGTGAGAA
GACAAGGAGAGCCCACACTCACCTCCCAATGTACCATGCACACCACATTT
GCTATATTTACCATATCTACCATAAATACCATACAATCCATAATGCCATA
TCTACCATATCTACCATATCTAACATAAATACCATAAATGCCATAAATAC
CCAACATACCATACATACCACAGAATCCATCCTTTGCGCTCCCTGCTGCT
CACCCACATGTCACCCATGGCAGGTATTGGAAATCCCTCACATGAGCAGG
AAGGGCTCCGAGCACCTCAGTGTGGACATGGGCTACCTGTTCAACGTCAT
CAGCGCCCTTGATCTCACCCCACACCCCCTCCTAACCCACCTTGGAAGAG
TGGTCCGGTTGGGACGGGAGGATGCCTTGGCACGCCTTGAGGATCCTGCA
GCAGGTTATGGCTAGGATTAAGGTTAAGGTTTGGGTGTGACTGGGATAAG
AGGGGGGGGGAGGAACTAACCCCAACCCTACATTAGACAGTGCTGCAAAC
TAGTTTGTAGTATATGCTTTGCGTTTATGATATTTGACAACCAGAAAAAA
TGACCAAGGGCTCCGTAGTCAGGAGCAAACCAACAACCAACAACCAACAA
CCAAACAGCCAACAACCAAACAACCAAACAACCAAACAACCAAACAACCA
AACAACCAAATAACCAAACAACCAACAACCAAATAATCAACAACTAACTG
ACATCCAAGAAAAGAATTTGCTTCAGGAATCTCTGTTTCATGACTTTGGG
CCCCCGATTTTTCCTCCTCTTCCTCTTTTCTTTTTCTTTTACTTCCATGA
GTTTGAATGGCTTCATAATGCACTCCACTGCACTTTGCTGTGCTGTGCAA
TGCTCAAAAGTAGTACTTCGTATCACATAGCCCATTGAAAATACAGCCCA
TCGAAAATATAGCATAGCAAGGTAACGCTTTGTGATGCACGTCCGTGTGT
GCAACTTGCCGTTGAATTTTCTAGCTGCGCAGTTCACAGTTGTGATTTTT
TTTGTTATTCACGAGCTGCTTTGGAGCACGTGGGTATGTTTCTTGTGAGA
TTGTTACTGGAACTTGGTGTGGTATGGATATGTACAGCACGATTCTGAAG
GTGACTGGAAATCTGTTCAATATTGAATGCCAGCATCCGTTATGCGCACA
TCTACAGTAGGTATACATATACTAGAGGCCTGATTGATGAGCACCCGATT
ATGGCGATCTCAGAGTCTTTCCTTTGATACTACTACTCTGGAACGCTCTA
GGAGACCTTGCTGGGGTGGGCATCACAGGGAGTGCTCGTAAGAAATATGG
ACATGAATGCACTTGCTTTAAACGAGGTACCCCTGTAACTCCTGGAGGAG
GCATTTGGATATCTCGAGAACAAGCTCAATCCACATCAACCCGGCTCCCA
CTCCCACCCACTCCTAACAACCCTAATGCTATCCCCTCACAAATTTGTGC
AGGAAATGACCGGGTTCTGGCGGTGGTGCTAAAGATTGAGAAGCAGCTGG
CGAGTGCCAGGGGTTTGCTGCCTTCTACATCCTGATGCATCATTGCTGCA
TTCTCTTGCACAGTCTTTTGGGCTGTTGGTATTTGAAAGGGGAATGCCCA
GCATATTTCTCAGGGGGTCTATTTAGCGGACAAGTTAATCTATACGTTGG
CATTGCCTGGAGTAGAGCTCTCCATCAACAATACAAGTATGTAATCATAC
AAGGCACTGTAATAAAATGATAGTCAGCAAGAAACAAAGCGGCGAGTGCT
CGGTATTTTTTTTTATGATTTTATGGCTGCAGTGCTGGGTGGCGGTGCAG
TCCCCGTTGTCAAGATTGAAGGACGCCAACACCACCATCATGGACAGTCT
TTAGTCTCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig997:21452..23961-

>mRNA_D-mesarthrocarpus_Contig997.8.1 ID=mRNA_D-mesarthrocarpus_Contig997.8.1|Name=mRNA_D-mesarthrocarpus_Contig997.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=294bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig997:21452..23961- (Discosporangium mesarthrocarpum MT17_79)
ATGGCGACGGTTGGGATACTCATTGCCCGGGTATTGGAAATCCCTCACAT
GAGCAGGAAGGGCTCCGAGCACCTCAGTGTGGACATGGGCTACCTGTTCA
ACGTCATCAGCGCCCTTGATCTCACCCCACACCCCCTCCTAACCCACCTT
GGAAGAGTGGTCCGGTTGGGACGGGAGGATGCCTTGGCACGCCTTGAGGA
TCCTGCAGCAGGAAATGACCGGGTTCTGGCGGTGGTGCTAAAGATTGAGA
AGCAGCTGGCGAGTGCCAGGGGTTTGCTGCCTTCTACATCCTGA
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