mRNA_D-mesarthrocarpus_Contig997.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig997.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig997.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig997.4.1 vs. uniprot
Match: D8LGY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY1_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 9.670e-65
Identity = 113/209 (54.07%), Postives = 146/209 (69.86%), Query Frame = 1 
Query:   37 WRQVLRISMEVLVLWMLHALPHGLGVGRQLHGNFGSGRVGDLVGAGLHLLSQGLFIRLMGCLGRWCGGLNVLEVNALLLAISFLGNSVAGSRIRCLVA-----------DGQQISSFQIRGFFCRKEGVFGRLMMLSFPFDVADTLLSVQGILSATEREVIRPGAPLAASFKEFVSSATNTLDAHSLGTLGARNLVSMGAIKSRVRMLG 630
            W+QV RI++EV ++W  HALPHGLG GR L GNFG+G+ GDL+GA  H L QG FIRL+   GR    LNVLE N +LL +S LGN +AGSR+R +V               +  ++Q+RGFF R  G+FG   +LS PFD ADTLL++QGILSATEREV++    LA++F++F + + NTLDAHSLG +GARNL+ MG I +RVRM G
Sbjct:  305 WKQVARITIEVAIMWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAMWHFLGQGTFIRLVAASGRVVS-LNVLEANGILLGLSHLGNGLAGSRMRRVVGATAXXXXXXXXXXXEAHAYQLRGFFSRTNGIFGERPILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAQSANTLDAHSLGAVGARNLMGMGFIAARVRMFG 512
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BLAST of mRNA_D-mesarthrocarpus_Contig997.4.1 vs. uniprot
Match: A0A835ZF00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF00_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.640e-38
Identity = 88/199 (44.22%), Postives = 119/199 (59.80%), Query Frame = 1 
Query:   37 WRQVLRISMEVLVLWMLHALPHGLGVGRQLHGNFGSGRVGDLVGAGLHLLSQ-GLFIRLMGCLGRWCGGLNVLEVNALLLAISFLGNSVAGSRIRCLVADG--QQISSFQIRGFFCRKEGVFGRLMMLSFPFDVADTLLSVQGILSATEREVIRPGAPLAASFKEFVSSATNTLDAHSLGTLGARNLVSMGAIKSRVRM 624
            W+Q  R+++EV +L  LH LP GLGV  +L  +  + ++  L GA LH   Q G  + +     R    LN+ E NALLL  S +GN+ AGSR+ CL   G       +Q+RGFFCR  GVF    +LS PFD  DT+L  QGILSATERE+    + +  +F+ +  +  + LDAHSLGTLGARNL  MG + + VR+
Sbjct:  504 WQQAARVTVEVAILRYLHCLPCGLGVAAELREHTCARQLQPLAGAALHYAGQRGCAVAVAAAARRV--RLNLFEANALLLGASHVGNACAGSRLWCLDLGGGSDDAVGYQLRGFFCRTRGVFAARRVLSLPFDCVDTVLGCQGILSATERELACTTSAVGEAFRAWAGAPLSVLDAHSLGTLGARNLKGMGLVAAPVRL 700
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BLAST of mRNA_D-mesarthrocarpus_Contig997.4.1 vs. uniprot
Match: A0A7S1XTN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTN3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.730e-18
Identity = 56/127 (44.09%), Postives = 72/127 (56.69%), Query Frame = 1 
Query:  268 LLAISFLGNSVAGSRIRCLVADGQQISSFQIRGFFCRKEGVFGRLM--------------MLSFPFDVADTLLSVQGILSATEREVIRPGAPLAASFKEFVSSATNTLDAHSLGTLGARNLVSMGAI 606
            LLA SF+GN   G R+R   A G+    F++RGFFCR  G+                   +LS PFDVAD LL++QGILSATE +V+R G+ LA   +         + AHSLG LGARNL + GA+
Sbjct:    2 LLATSFVGNLCVGGRLR-RDATGEH---FELRGFFCRLRGICDEAFWAPVLGPASTCIAAVLSLPFDVADLLLNLQGILSATELDVLRGGSQLARDLRAGGGEEAVHVYAHSLGALGARNLATAGAL 124
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig997.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGY1_ECTSI9.670e-6554.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZF00_9STRA2.640e-3844.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XTN3_9STRA4.730e-1844.09Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig997contigD-mesarthrocarpus_Contig997:11459..16515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size630
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001490.1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.5734065-CDS-D-mesarthrocarpus_Contig997:11458..116351680791146.5734065-CDS-D-mesarthrocarpus_Contig997:11458..11635Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig997 11459..11635 -
1680791146.5955024-CDS-D-mesarthrocarpus_Contig997:13473..135841680791146.5955024-CDS-D-mesarthrocarpus_Contig997:13473..13584Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig997 13474..13584 -
1680791146.6068883-CDS-D-mesarthrocarpus_Contig997:14156..143481680791146.6068883-CDS-D-mesarthrocarpus_Contig997:14156..14348Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig997 14157..14348 -
1680791146.6168005-CDS-D-mesarthrocarpus_Contig997:15189..152861680791146.6168005-CDS-D-mesarthrocarpus_Contig997:15189..15286Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig997 15190..15286 -
1680791146.6289942-CDS-D-mesarthrocarpus_Contig997:16462..165151680791146.6289942-CDS-D-mesarthrocarpus_Contig997:16462..16515Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig997 16463..16515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig997.4.1prot_D-mesarthrocarpus_Contig997.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig997 11459..16515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig997.4.1

>prot_D-mesarthrocarpus_Contig997.4.1 ID=prot_D-mesarthrocarpus_Contig997.4.1|Name=mRNA_D-mesarthrocarpus_Contig997.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=210bp
EGEKGAGHGWTPWRQVLRISMEVLVLWMLHALPHGLGVGRQLHGNFGSGR
VGDLVGAGLHLLSQGLFIRLMGCLGRWCGGLNVLEVNALLLAISFLGNSV
AGSRIRCLVADGQQISSFQIRGFFCRKEGVFGRLMMLSFPFDVADTLLSV
QGILSATEREVIRPGAPLAASFKEFVSSATNTLDAHSLGTLGARNLVSMG
AIKSRVRMLG
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mRNA from alignment at D-mesarthrocarpus_Contig997:11459..16515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig997.4.1 ID=mRNA_D-mesarthrocarpus_Contig997.4.1|Name=mRNA_D-mesarthrocarpus_Contig997.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=5057bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig997:11459..16515- (Discosporangium mesarthrocarpum MT17_79)
GAGGGAGAGAAGGGAGCGGGACATGGCTGGACACCGTGGCGGCAGGTGTT
GAGGTAACCTAACCCTATCTAACCTGACCCTAACCCTTGCTCGTGGCTGG
TGTGGTACTCTGGGTGTTCATCTGCCGGGGCTCTGAACACCGCTCCAATC
ATCACGACCTATGGAGTTTTAAAACAGAGAGCAGCGGTTTCGGTTCTCGT
TCCCTGTCAGCCCCTGGGTCAAGTTCTGGAGCCCTATGAATGGTTTTGGT
TCTGTGAAAAATGGAACATGTGCGCATGCATTTGCATGTATCTTTCTTGT
CCGTCCCTGTTTGTTGCTATGTCTGATGACATGGGAGCAGTACATGCACA
CATTACTTCTGAGATGAAAGATCAATTGCATGTGAGGTGGAAGTTCAAGA
TTGAGGGTTAGGGTTAGGGTTAGGGTTAGGGGACCCTTAGTTGGTCACTT
GCTTCCTGCTTGTGCCCGCGAGCGGTTGGTATTAATTGCTGAAATGTGCA
AATGTGTGCTTGTCTTCCTACTGCCTCTTTCTGTTCATTTTAAGTCTCTG
TGAAGTATATCAAAACGTTTGTAATTAATTCTCTATAGAGCACTTCAAAA
CGGTTCTGATTACAAAATAATTAAATCTCTGTAGAGTAGTTCAAAACAGT
TCTGATTACAAAAAATTGATTCTCTGTGGAGTAATTCAAAATGGTTCCAA
TAAAAAATTGAAGCACTGCACCAATGTGCAGGATGAGTTCAAACATCAAC
AAGGTCAAGGTCTCATCGTGTTGCCTGCTTCCAGGTCGAGGCTTTGCAGC
ACTCCAGAGCATCTACACTACATGTGGTGCTCTAGAGCTCTTTGATTTTC
TGGGGAATCTGACTGAAATGGCTGACAAGCCACGTCTCATTTCCCCTCAC
CATTCCTTTCTCTGCACCGGTTCCAACACTCTGAAATCTTACTCTGACAA
TTTAGAAATGTCTTATTCTAAATATTGAGAAAAATCCTTCTCTAAATATT
TAGAAATATCTTACTCTAGATGTTTAGAAAAATGTGTGCAGGTGAGGTAA
TGTAGGCAGAGTAAAACTACATCCAAACGCCATGTAGATGCACCTCCTGC
TAACTCTAACTCTAGCTGCCTCTGGGACACAAAAGGCAGAGTACGGCTCA
GTTTGGTAGCCCCCCTCTCTTCCCCCCTCTCCCTCCCTCTCCCCCCCTCC
TGCGGTGTGGGTGGTGCTGGTTGGCGCAGGATATCAATGGAGGTGCTCGT
CCTTTGGATGCTACATGCCCTGCCCCATGGCCTGGGAGTGGGAAGACAGC
TTCATGGCAACTTCGGTTCCGGCAGGGTGTGTGTGTGTTAACACAGTGTT
GTGTGTGTTAACACAGTATTGTGTGTGTTAACACAGTATTGTGTGTGTTA
ACACAGTGTTGTGTGTGTAAACACAGTGTTGTGTGTGTTAACACAGTGTT
GTGTGTGTTAACACAGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGAGCGCGCTCCAAGGGAGGGGTTGACTGTATTCTTTTTTGTG
CTCCTATCCCCACATTTTTTTTTTTGAGCCACACACAAGTGAGGGATGGG
GTTTCTTGTCTTTCTCCCTCCGTTTTCTCTCTGTTCTTTTCTCGTGCTGC
CTCAGGAAGCAAGTGGTTTATTTTGTGCTTTTTGCAGGGAGCGGTGAGGG
AGTGTGCAGAGGGCAAGGATCGAGTTAGGATTAGGGTTGCAGCTGTAAGC
CATACCTTGCATCCCAAACCTCAACCCTAAAACATACCCCCCCCCGTGTG
GACTTGTGCCCAACATTAGCAATAGCAGGATAGGTTGATTTGGGGGCAAA
ATGTACTCTGAGAAGAGCTGTCGGTGAAACACGTGAAAACTATGTGGAAA
ATTCCCGGAAAATTCTTGTGCTCTACGTGGCACCTGCTTCTTAGGCATGT
TTTGTGCACATGCATTTATATATATAGCCCCTAGAGAGAGCACTGCTTCT
CTTTTTCCTCTCTATCCACCGTCTTGTTCTGTTTTCTCGCCACGTTTTGC
TGCACTGCTCATTTTTTTTTTTTTACCGCTTTTGACTCCCTGCCCTAAGC
TATGCCCGCCCATCCCCCTAAGCTATGCCCGCCCATCCATCCCATGCGAC
GTCATGCTCCATGACAGGTGGGCGATCTTGTGGGAGCTGGCCTGCACCTG
CTGAGCCAGGGGCTCTTCATCCGGCTGATGGGGTGTTTGGGCAGGTGGTG
CGGTGGTCTGAACGTCCTGGAGGTGAACGCCCTCCTGTTGGCCATCAGCT
TCCTGGGCAATTCCGTCGCTGGATCTCGAATTCGCTGCCTGGTTGCAGAT
GGGCAACAGGTACATAGGCAAATGCATAGGCATGGGAGATACTTGGGCAT
GGGAGATGCATAGGTATGACAGATGCACAGGTATGGGAAATGCATAGGCA
TGAGAGATGGATAGGCATGAGAGATGCATAGGCATGAGAGATGCATAGGC
ATGTGGTATACATATGTATGGGGATATGTTCAAGGCATGACAGATGCATA
GGTATAGGAAATGCATAGGCATCAGCGATGGATAGGCATGAGAGATGCAT
AGGCATGGGGTATACATAGGTATAGAAAGATTTTCAAGGTATGGGAAATG
TGTAGTCATCAGCGATGGATAGGTATGAGAGATGTGTAGACATGGGAGAT
ACATGGAGAATCACGGGAGAGACATTCCTTGCTTGGCTTGAATTGGACTT
GTTATGACTTTGGGTTGGGGTTAGGGTTAGGGTTTGGCCAATTGGGTTAG
GGTTAGGTTAGGTTTTGGCCAATTGGGTTAGGGTTAGGGTTAGGGTTTGG
CCAATTGTCAACTTCCCTTCGCTTCACTTTGCCGGCCATGCCCCGGCCAA
TGGGCTCTTTTTTCTTCTTCTACCCCAGCAGATCAGCTCATTCCAGATCC
GTGGGTTCTTCTGCCGTAAGGAAGGCGTCTTTGGGCGCCTGATGATGCTG
TCCTTCCCATTTGACGTTGCTGACACGCTTCTCTCCGTCCAGGTAAAGAG
GCGTGTGCATTCTATGTTACAGAAAAATAGAGAAGAGAAGAGAAGAGAAG
AGAGGACAGGAGAAAAAGAAAGAAAAGAGACAGCATGTAACGCCAGTACA
TACTTCATGCTTCGAAGTATTTGTGCATGGTTCAGTATACCTGTACTCCT
TTGACTAGTCTGTAAGATACGTCATATACTTCCTCCTTTGAAGCATTTTA
GGCATTTTTTGAATGCTTCAACCTTCAAGATACTCCCTCCTTTCAAGCGC
CTTAATTATTTTTTGTATGCTTTAACCTTCAACTTACTCCCTCCTTTGAA
GCACTTTGGGCATTTTTTGCATGCTTCAACCTTCAACATACTCCCTCCTT
TGAAGTATTTTGGGCATTTTTTGTATGCTTCAACCTTCAACATACTCCCT
CCTTTGAAGCACTTTAAGCATTTTTTGTATACTTGAACCTTCAAAGCATT
TCTGCGTCATTAGGGTTATGGTTCATCGTAAGAAACATGTGTTCATTAGG
GTTATGGGCATTACACCTGCATTCATACATGTACCACATGCTGCACTTGG
TATGTGCAAATCACAGGTGAAAATGTCGATCTTGCGTGTCATGGGGTTGG
GGTTAGGGATAGGGACAGGGTTACGGTTAGGGATAGGGTTATGGTTTGGG
ATAGGGTTAGGGATAGGGTTACGGTTAGGGTTAGGAATAGGGTTACGGTT
AGGAATAGGGTTATGGTTTGGGATAGGGTTACGGTTAGGGATAGGGTCAG
GGATAGGGTTGGCGTGAGAGGATCACGGACTAGGGCTTAATCAGCTTTGT
GTTGTTCTGTTTTTGTTACTTTGTGTTATTCTGTTTGTTCTGTTTTGTTG
GGGGTTGGGTAAGGGGCCAGTTGCACTTCTCTTGCTTCTTGTACCCTGCA
CCTGAAGATGTGTGGTGTTTGGGTCACACCTAACCCTAACCCTAACCCAG
CATTTGGTCACACCTAGTCGCTGCCCTGATGTGTGGGTGGAAGCACAGGG
ATGGGGGGGGGGGGGGAGTTTAAGACATTAATCTAAGTGCGGGAGACGGG
TAGGAGAGGGATTGGAGAGGGGTAAAGGGTTAGGGTTAGGCTTCACCTTC
ATTCTTTCGGCAGGGTTTGATGAGCATGACTTGTGGCTGAATAAGGCCTA
CTGAGGGAAGGAAAGATAGGAAATTGATGTACAGTAGCTCATTGATGTAG
CTCATTAATGCACCTCACTGATTTTTTAGCTGTTGCAGATGCAGCTCATT
GGTGTAACTGAAAGATGTCTTAGAGCACTCAGACTGTGCAACCATAGATA
GGGCTATCTGTACCCTAAGAAGAAAAGAAAGAAAGAAAAAAAACGCTCCT
CTAATCCAGTAGGCTTAAGCTCAAATCGCCAGTGTGCCACGACCCCGCAA
CCACACGCTCATATCCAGAACCCCTCCTAATCCTGGCCCTCACCCTACCC
CATATTCTCTATAACCCTAACCCTCACAGAATCGAGAAAGCAAGAAAATC
GAATCACATCAGTCTTGATGTCCGAGGAAGAAAGAAACTTCCAGCCCTGG
CAACCCCCCATGAATCAATGCTCTCCCACCCAAACAGAAACAAACACAAG
AGATCGTTCATAAAAACGCTTTGCATTAAAATGAAAGACTTGGGGGTTGG
GGTCAGGGTCAGAAGTTATAGGATACTACAGTTGGTTAATAATTAACTAT
CGCGGAGTTCTTCGAACACCCACAAAGTAGCAACCATATTGATTTCAGTC
AACCATAGCAACCCGAACCCTAATCCAAGAAAACAATACATATCCAAAAT
AAACAAAGTAACAAAAAAACAAACAAACAGGGGATCTTGAGTGCGACTGA
GAGGGAGGTCATCCGCCCTGGTGCCCCGCTGGCGGCCTCCTTCAAGGAGT
TTGTCAGCAGCGCCACCAACACCCTGGACGCCCACTCCTTGGGCACCCTT
GGAGCAAGGAACCTGGTGAGCATGGGCGCCATCAAGTCCCGAGTACGCAT
GCTTGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig997:11459..16515-

>mRNA_D-mesarthrocarpus_Contig997.4.1 ID=mRNA_D-mesarthrocarpus_Contig997.4.1|Name=mRNA_D-mesarthrocarpus_Contig997.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=630bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig997:11459..16515- (Discosporangium mesarthrocarpum MT17_79)
GAGGGAGAGAAGGGAGCGGGACATGGCTGGACACCGTGGCGGCAGGTGTT
GAGGATATCAATGGAGGTGCTCGTCCTTTGGATGCTACATGCCCTGCCCC
ATGGCCTGGGAGTGGGAAGACAGCTTCATGGCAACTTCGGTTCCGGCAGG
GTGGGCGATCTTGTGGGAGCTGGCCTGCACCTGCTGAGCCAGGGGCTCTT
CATCCGGCTGATGGGGTGTTTGGGCAGGTGGTGCGGTGGTCTGAACGTCC
TGGAGGTGAACGCCCTCCTGTTGGCCATCAGCTTCCTGGGCAATTCCGTC
GCTGGATCTCGAATTCGCTGCCTGGTTGCAGATGGGCAACAGATCAGCTC
ATTCCAGATCCGTGGGTTCTTCTGCCGTAAGGAAGGCGTCTTTGGGCGCC
TGATGATGCTGTCCTTCCCATTTGACGTTGCTGACACGCTTCTCTCCGTC
CAGGGGATCTTGAGTGCGACTGAGAGGGAGGTCATCCGCCCTGGTGCCCC
GCTGGCGGCCTCCTTCAAGGAGTTTGTCAGCAGCGCCACCAACACCCTGG
ACGCCCACTCCTTGGGCACCCTTGGAGCAAGGAACCTGGTGAGCATGGGC
GCCATCAAGTCCCGAGTACGCATGCTTGGG
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