mRNA_D-mesarthrocarpus_Contig9962.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9962.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9962.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A438EJA2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EJA2_VITVI)

HSP 1 Score: 87.8 bits (216), Expect = 3.550e-16
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDD---SQLLADDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMNRP 393
            F+  YVD+ L+  +D  +L EVK F++  F MKD+GE   ++G+ + RD  +G L L+Q  Y   +L+RF M      +  +   D    +Q   +D +R   +        G+L+Y Q+CTRPD++FSV  L R+ + P
Sbjct:  903 FLVLYVDDILLATNDKGLLHEVKQFLSKNFNMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQCPKNDLEREQMKNIPYASAIGSLMYAQVCTRPDIAFSVGMLGRYQSNP 1042          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A438HHA6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HHA6_VITVI)

HSP 1 Score: 87.4 bits (215), Expect = 3.630e-16
Identity = 48/140 (34.29%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSD----DSQLLADDAKRRCQEI-----TGALVYLQLCTRPDLSFSVLRLARHMNRP 393
            F+  YVD+ L+  ++  +L EVK F++  F MKD+G+V  ++G+ + RD  RG L L+Q  Y   +L+RF M      I  +   D    D +   D  + + + I      G+L+Y+Q+CTRPD++F+V  L R+ + P
Sbjct:  310 FLVLYVDDILLATNNKGLLHEVKQFLSKNFDMKDMGDVTYVIGIEIQRDRFRGLLGLSQETYINKVLERFRMKDCSPSIAPIVKGDRFNLDQRPKNDLEREQMKNIPYASAVGSLMYVQVCTRPDIAFTVGMLGRYQSNP 449          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A2P6QLT4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QLT4_ROSCH)

HSP 1 Score: 86.3 bits (212), Expect = 1.070e-15
Identity = 51/142 (35.92%), Postives = 73/142 (51.41%), Query Frame = 1
Query:    1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDDSQLLADDAKRRCQE-----------ITGALVYLQLCTRPDLSFSVLRLARHMNRP 393
            F+  YVD+ L+  SD  +L + K F++  F MKDLGE   +LG+ + RD K+G L L+Q  Y   +L RF M +       +T  D   L  D   R   E           + G+L+Y Q+CTRPD+++SV  L R    P
Sbjct:  381 FLVLYVDDILLANSDLSLLHQTKDFLSRNFEMKDLGEASYVLGIEICRDRKKGLLGLSQKNYIDKVLKRFKMDKCAPGDAPMTKGD--LLHKDQCPRNNLEQESMKDKPYASLVGSLMYAQVCTRPDIAYSVGMLGRFQTNP 520          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A5B377_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B377_VITVI)

HSP 1 Score: 86.3 bits (212), Expect = 1.180e-15
Identity = 48/140 (34.29%), Postives = 80/140 (57.14%), Query Frame = 1
Query:   10 AYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTN----SDDSQLLADDAKRRCQEIT-----GALVYLQLCTRPDLSFSVLRLARHMNRPSKK 402
            +YVD+ L+ GSD + +  +K  ++  F MKDLG    ILG+ + RD   GTL L+QS Y + +L RF M   +L    L +    S +  L  ++ +    ++      G+L+Y+ +CTRPD++ +V  ++R M+RP K+
Sbjct:  908 SYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKLMSTPLGSHFKLSKEQSLKIEEERDHMSKVPYASAIGSLMYVMVCTRPDIAHAVGVVSRFMSRPGKQ 1047          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY)

HSP 1 Score: 85.5 bits (210), Expect = 1.920e-15
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   13 YVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMT-----RLQLYIL-SLTNSD---DSQLLADDAKRRCQEITGALVYLQLCTRPDLSFSVLRLARHMNRPSK 399
            YVD+ L+ G+D D+L EVK ++   F MKDLGE   ILG+ + RD     LSL+Q  Y  T+L++F M      R+    L SL+  D   + Q   D          G+L+YL +CTRPD++F+V  ++R  + P K
Sbjct:  527 YVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKFHMVDCLSGRIPYNNLRSLSQKDCPKNDQETLDPKLYPYASAVGSLMYLMICTRPDIAFAVGMVSRFQSNPGK 664          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A2N9I256_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I256_FAGSY)

HSP 1 Score: 85.5 bits (210), Expect = 2.130e-15
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   13 YVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMT-----RLQLYIL-SLTNSD---DSQLLADDAKRRCQEITGALVYLQLCTRPDLSFSVLRLARHMNRPSK 399
            YVD+ L+ G+D D+L EVK ++   F MKDLGE   ILG+ + RD     LSL+Q  Y  T+L++F M      R+    L SL+  D   + Q   D          G+L+YL +CTRPD++F+V  ++R  + P K
Sbjct:  703 YVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKFHMVDCLSGRIPYNNLRSLSQKDCPKNDQETLDPKLYPYASAVGSLMYLMICTRPDIAFAVGMVSRFQSNPGK 840          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A438G561_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G561_VITVI)

HSP 1 Score: 85.1 bits (209), Expect = 2.920e-15
Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDD---SQLLADDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMN 387
            F+  YVD+ L+  +D  +L EVK F++  F MKD+G+   ++G+ + RD  RG L L+Q  Y   +L+RF M      I  +   D    +Q   +D +R   +        G+L+Y+Q+CTRPD++F+V  L R+ +
Sbjct:  815 FLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGDATYVIGIKIQRDRFRGLLGLSQETYINKVLERFRMKDCSPSIAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYVQVCTRPDIAFAVGMLGRYQS 952          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A438HH40_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HH40_VITVI)

HSP 1 Score: 84.0 bits (206), Expect = 3.070e-15
Identity = 47/140 (33.57%), Postives = 76/140 (54.29%), Query Frame = 1
Query:    1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDD---SQLLADDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMNRP 393
            F+  YVD+ L+  ++  +L EVK F++  F MKD+G+   ++G+ + RD  RG L L+Q  Y   +L+RF M      I  +   D     Q   +D +R   +        G+L+Y+Q+CTRPD++F V  L R+ + P
Sbjct:   83 FLVLYVDDILLATNNKGLLHEVKQFLSKNFDMKDMGDATYVIGIKIQRDICRGLLGLSQETYINKVLERFQMKDCSPSIAPIVKGDRFNLDQCPKNDLEREQMKNIPYASTVGSLMYVQVCTRPDIAFIVGMLGRYQSNP 222          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A151U071_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U071_CAJCA)

HSP 1 Score: 81.3 bits (199), Expect = 5.360e-15
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDDSQLLA---DDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMN 387
            F+  YVD+ L+  +D  +L E K +++  F MKD+G    ++G+ +  D  +G L L+Q  Y   IL+RF M    + I+ +   D   L+    ++ +R+  E      + G+L+Y+Q CTRPD+SF+V    R+ +
Sbjct:   83 FLVLYVDDILLATNDLGMLREKKEYLSRNFEMKDMGRESYVIGIEILCDRSQGLLGLSQKAYINKILERFNMENCSVGIVPIQKGDKFSLMQCPKNNLERKPMERIPYASVVGSLMYVQTCTRPDISFAVGMFCRYQS 220          
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A540NR27_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NR27_MALBA)

HSP 1 Score: 84.3 bits (207), Expect = 5.520e-15
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query:   13 YVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDD---SQLLADDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMNRPS-------KKKTR*CCQAHTHTPLYPRDEIYV 468
            YVD+ L+  + + +L E KSF+   F MKDLGE   +LG+ + RD +RG L L+Q  Y + +L RF M       + ++  D     Q   ++ +R   +      + G+L+Y+Q+CTRPDL+F++  L R  + P        K+  R   +  +H  +Y + E  V
Sbjct:  988 YVDDILLAANCSSLLDETKSFLQCKFEMKDLGEASYVLGIEIKRDRERGLLGLSQKGYIEKVLKRFNMASCGTTEMPISKGDKLSKEQSPRNEIERENMKDKPYASLVGSLMYVQVCTRPDLAFTISVLGRCQSNPGEAHWNAGKRVMRYLQRTKSHMLIYKKTERLV 1155          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438EJA2_VITVI3.550e-1634.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HHA6_VITVI3.630e-1634.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6QLT4_ROSCH1.070e-1535.92Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A5B377_VITVI1.180e-1534.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9IT45_FAGSY1.920e-1538.41Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9I256_FAGSY2.130e-1538.41Uncharacterized protein n=4 Tax=Fagus sylvatica Ta... [more]
A0A438G561_VITVI2.920e-1534.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HH40_VITVI3.070e-1533.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A151U071_CAJCA5.360e-1531.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A540NR27_MALBA5.520e-1531.55Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9962contigD-mesarthrocarpus_Contig9962:767..1501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4558.Sb0010s005460.1
PFAMsRVT_2
Model size718
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.18e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YYP@33090|Viridiplantae,3GQD7@35493|Streptophyta,3M3FD@4447|Liliopsida,3IKKZ@38820|Poales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size384
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.9743133-UTR-D-mesarthrocarpus_Contig9962:766..10701680791145.9743133-UTR-D-mesarthrocarpus_Contig9962:766..1070Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9962 767..1070 -
1680791146.014372-UTR-D-mesarthrocarpus_Contig9962:1471..15011680791146.014372-UTR-D-mesarthrocarpus_Contig9962:1471..1501Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9962 1472..1501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.9882185-CDS-D-mesarthrocarpus_Contig9962:1070..12461680791145.9882185-CDS-D-mesarthrocarpus_Contig9962:1070..1246Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9962 1071..1246 -
1680791146.00223-CDS-D-mesarthrocarpus_Contig9962:1263..14711680791146.00223-CDS-D-mesarthrocarpus_Contig9962:1263..1471Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9962 1264..1471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9962.2.1prot_D-mesarthrocarpus_Contig9962.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9962 1071..1471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9962.2.1

>prot_D-mesarthrocarpus_Contig9962.2.1 ID=prot_D-mesarthrocarpus_Contig9962.2.1|Name=mRNA_D-mesarthrocarpus_Contig9962.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=128bp
MTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQS
LYCQTILDRFGMTRLQLYILSLTNSDDSQLLADDAKRRCQEITGALVYLQ
LCTRPDLSFSVLRLARHMNRPSKKKTR*
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mRNA from alignment at D-mesarthrocarpus_Contig9962:767..1501-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9962.2.1 ID=mRNA_D-mesarthrocarpus_Contig9962.2.1|Name=mRNA_D-mesarthrocarpus_Contig9962.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=735bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9962:767..1501- (Discosporangium mesarthrocarpum MT17_79)
TTCGTCGCTGCTTACGTGGATAACAATTTGATGACTGGCAGTGACAATGA TATCCTTACCGAAGTGAAGTCATTCATAACAAATGCGTTTATGATGAAGG ACTTAGGTGAAGTTCCCACGATTCTTGGAGTAACAGTTACACGTGACTCC AAGAGAGGGACACTGTCACTGAATCAGAGCCTTTACTGCCAAACAATCCT TGATCGATTCGGCATGACAAGACTGCAATTATATATACGTTACTTCCTGG TGAAGTTTCACTTACCAATTCCGACGATTCCCAGCTTCTTGCTGATGACG CCAAGCGCCGATGTCAAGAAATAACAGGAGCGCTGGTATACTTACAATTG TGTACCAGACCTGACCTCAGTTTTTCAGTGCTACGATTGGCGCGTCACAT GAATCGCCCTAGTAAAAAAAAGACACGTTAGTGCTGCCAAGCGCACACTC ACACTCCGCTATATCCAAGGGACGAGATATACGTCCCTTATGTATCAGCG AGGTCATTTCAAGCTCCATGGTTATGCAGATGCAGCCTATGCAAACGGAC GAAGAAACCAGTCATTCCATGAGTGGTTATATCTTCTTTCTTGGCAACGC GGCTCTTAGTTGGTCAAAACACAATCACTGGTCACTAGAACTTCAATTGA ATGTGAACTTGTGAGCCTTATCGAGGCCACAGATGAAGAGAGATACATAT CGACCTTTCTCCAAGAAATCGGTCATGATGATACT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9962:767..1501-

>mRNA_D-mesarthrocarpus_Contig9962.2.1 ID=mRNA_D-mesarthrocarpus_Contig9962.2.1|Name=mRNA_D-mesarthrocarpus_Contig9962.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=384bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9962:767..1501- (Discosporangium mesarthrocarpum MT17_79)
ATGACTGGCAGTGACAATGATATCCTTACCGAAGTGAAGTCATTCATAAC
AAATGCGTTTATGATGAAGGACTTAGGTGAAGTTCCCACGATTCTTGGAG
TAACAGTTACACGTGACTCCAAGAGAGGGACACTGTCACTGAATCAGAGC
CTTTACTGCCAAACAATCCTTGATCGATTCGGCATGACAAGACTGCAATT
ATATATACTTTCACTTACCAATTCCGACGATTCCCAGCTTCTTGCTGATG
ACGCCAAGCGCCGATGTCAAGAAATAACAGGAGCGCTGGTATACTTACAA
TTGTGTACCAGACCTGACCTCAGTTTTTCAGTGCTACGATTGGCGCGTCA
CATGAATCGCCCTAGTAAAAAAAAGACACGTTAG
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