mRNA_D-mesarthrocarpus_Contig9962.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A438EJA2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EJA2_VITVI) HSP 1 Score: 87.8 bits (216), Expect = 3.550e-16 Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 1
Query: 1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDD---SQLLADDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMNRP 393
F+ YVD+ L+ +D +L EVK F++ F MKD+GE ++G+ + RD +G L L+Q Y +L+RF M + + D +Q +D +R + G+L+Y Q+CTRPD++FSV L R+ + P
Sbjct: 903 FLVLYVDDILLATNDKGLLHEVKQFLSKNFNMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQCPKNDLEREQMKNIPYASAIGSLMYAQVCTRPDIAFSVGMLGRYQSNP 1042
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A438HHA6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HHA6_VITVI) HSP 1 Score: 87.4 bits (215), Expect = 3.630e-16 Identity = 48/140 (34.29%), Postives = 79/140 (56.43%), Query Frame = 1
Query: 1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSD----DSQLLADDAKRRCQEI-----TGALVYLQLCTRPDLSFSVLRLARHMNRP 393
F+ YVD+ L+ ++ +L EVK F++ F MKD+G+V ++G+ + RD RG L L+Q Y +L+RF M I + D D + D + + + I G+L+Y+Q+CTRPD++F+V L R+ + P
Sbjct: 310 FLVLYVDDILLATNNKGLLHEVKQFLSKNFDMKDMGDVTYVIGIEIQRDRFRGLLGLSQETYINKVLERFRMKDCSPSIAPIVKGDRFNLDQRPKNDLEREQMKNIPYASAVGSLMYVQVCTRPDIAFTVGMLGRYQSNP 449
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A2P6QLT4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QLT4_ROSCH) HSP 1 Score: 86.3 bits (212), Expect = 1.070e-15 Identity = 51/142 (35.92%), Postives = 73/142 (51.41%), Query Frame = 1
Query: 1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDDSQLLADDAKRRCQE-----------ITGALVYLQLCTRPDLSFSVLRLARHMNRP 393
F+ YVD+ L+ SD +L + K F++ F MKDLGE +LG+ + RD K+G L L+Q Y +L RF M + +T D L D R E + G+L+Y Q+CTRPD+++SV L R P
Sbjct: 381 FLVLYVDDILLANSDLSLLHQTKDFLSRNFEMKDLGEASYVLGIEICRDRKKGLLGLSQKNYIDKVLKRFKMDKCAPGDAPMTKGD--LLHKDQCPRNNLEQESMKDKPYASLVGSLMYAQVCTRPDIAYSVGMLGRFQTNP 520
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A5B377_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B377_VITVI) HSP 1 Score: 86.3 bits (212), Expect = 1.180e-15 Identity = 48/140 (34.29%), Postives = 80/140 (57.14%), Query Frame = 1
Query: 10 AYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTN----SDDSQLLADDAKRRCQEIT-----GALVYLQLCTRPDLSFSVLRLARHMNRPSKK 402
+YVD+ L+ GSD + + +K ++ F MKDLG ILG+ + RD GTL L+QS Y + +L RF M +L L + S + L ++ + ++ G+L+Y+ +CTRPD++ +V ++R M+RP K+
Sbjct: 908 SYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKLMSTPLGSHFKLSKEQSLKIEEERDHMSKVPYASAIGSLMYVMVCTRPDIAHAVGVVSRFMSRPGKQ 1047
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY) HSP 1 Score: 85.5 bits (210), Expect = 1.920e-15 Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 1
Query: 13 YVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMT-----RLQLYIL-SLTNSD---DSQLLADDAKRRCQEITGALVYLQLCTRPDLSFSVLRLARHMNRPSK 399
YVD+ L+ G+D D+L EVK ++ F MKDLGE ILG+ + RD LSL+Q Y T+L++F M R+ L SL+ D + Q D G+L+YL +CTRPD++F+V ++R + P K
Sbjct: 527 YVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKFHMVDCLSGRIPYNNLRSLSQKDCPKNDQETLDPKLYPYASAVGSLMYLMICTRPDIAFAVGMVSRFQSNPGK 664
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A2N9I256_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I256_FAGSY) HSP 1 Score: 85.5 bits (210), Expect = 2.130e-15 Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 1
Query: 13 YVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMT-----RLQLYIL-SLTNSD---DSQLLADDAKRRCQEITGALVYLQLCTRPDLSFSVLRLARHMNRPSK 399
YVD+ L+ G+D D+L EVK ++ F MKDLGE ILG+ + RD LSL+Q Y T+L++F M R+ L SL+ D + Q D G+L+YL +CTRPD++F+V ++R + P K
Sbjct: 703 YVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKFHMVDCLSGRIPYNNLRSLSQKDCPKNDQETLDPKLYPYASAVGSLMYLMICTRPDIAFAVGMVSRFQSNPGK 840
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A438G561_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G561_VITVI) HSP 1 Score: 85.1 bits (209), Expect = 2.920e-15 Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 1
Query: 1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDD---SQLLADDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMN 387
F+ YVD+ L+ +D +L EVK F++ F MKD+G+ ++G+ + RD RG L L+Q Y +L+RF M I + D +Q +D +R + G+L+Y+Q+CTRPD++F+V L R+ +
Sbjct: 815 FLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGDATYVIGIKIQRDRFRGLLGLSQETYINKVLERFRMKDCSPSIAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYVQVCTRPDIAFAVGMLGRYQS 952
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A438HH40_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HH40_VITVI) HSP 1 Score: 84.0 bits (206), Expect = 3.070e-15 Identity = 47/140 (33.57%), Postives = 76/140 (54.29%), Query Frame = 1
Query: 1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDD---SQLLADDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMNRP 393
F+ YVD+ L+ ++ +L EVK F++ F MKD+G+ ++G+ + RD RG L L+Q Y +L+RF M I + D Q +D +R + G+L+Y+Q+CTRPD++F V L R+ + P
Sbjct: 83 FLVLYVDDILLATNNKGLLHEVKQFLSKNFDMKDMGDATYVIGIKIQRDICRGLLGLSQETYINKVLERFQMKDCSPSIAPIVKGDRFNLDQCPKNDLEREQMKNIPYASTVGSLMYVQVCTRPDIAFIVGMLGRYQSNP 222
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A151U071_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U071_CAJCA) HSP 1 Score: 81.3 bits (199), Expect = 5.360e-15 Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 1 FVAAYVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDDSQLLA---DDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMN 387
F+ YVD+ L+ +D +L E K +++ F MKD+G ++G+ + D +G L L+Q Y IL+RF M + I+ + D L+ ++ +R+ E + G+L+Y+Q CTRPD+SF+V R+ +
Sbjct: 83 FLVLYVDDILLATNDLGMLREKKEYLSRNFEMKDMGRESYVIGIEILCDRSQGLLGLSQKAYINKILERFNMENCSVGIVPIQKGDKFSLMQCPKNNLERKPMERIPYASVVGSLMYVQTCTRPDISFAVGMFCRYQS 220
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Match: A0A540NR27_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NR27_MALBA) HSP 1 Score: 84.3 bits (207), Expect = 5.520e-15 Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query: 13 YVDNNLMTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSLYCQTILDRFGMTRLQLYILSLTNSDD---SQLLADDAKRRCQE------ITGALVYLQLCTRPDLSFSVLRLARHMNRPS-------KKKTR*CCQAHTHTPLYPRDEIYV 468
YVD+ L+ + + +L E KSF+ F MKDLGE +LG+ + RD +RG L L+Q Y + +L RF M + ++ D Q ++ +R + + G+L+Y+Q+CTRPDL+F++ L R + P K+ R + +H +Y + E V
Sbjct: 988 YVDDILLAANCSSLLDETKSFLQCKFEMKDLGEASYVLGIEIKRDRERGLLGLSQKGYIEKVLKRFNMASCGTTEMPISKGDKLSKEQSPRNEIERENMKDKPYASLVGSLMYVQVCTRPDLAFTISVLGRCQSNPGEAHWNAGKRVMRYLQRTKSHMLIYKKTERLV 1155 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9962.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9962.2.1 >prot_D-mesarthrocarpus_Contig9962.2.1 ID=prot_D-mesarthrocarpus_Contig9962.2.1|Name=mRNA_D-mesarthrocarpus_Contig9962.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=128bp MTGSDNDILTEVKSFITNAFMMKDLGEVPTILGVTVTRDSKRGTLSLNQSback to top mRNA from alignment at D-mesarthrocarpus_Contig9962:767..1501- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9962.2.1 ID=mRNA_D-mesarthrocarpus_Contig9962.2.1|Name=mRNA_D-mesarthrocarpus_Contig9962.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=735bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9962:767..1501- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9962:767..1501- >mRNA_D-mesarthrocarpus_Contig9962.2.1 ID=mRNA_D-mesarthrocarpus_Contig9962.2.1|Name=mRNA_D-mesarthrocarpus_Contig9962.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=384bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9962:767..1501- (Discosporangium mesarthrocarpum MT17_79)back to top |