mRNA_D-mesarthrocarpus_Contig996.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig996.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig996.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig996.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig996contigD-mesarthrocarpus_Contig996:3917..5064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G2Y6
PFAMsLRR_8
Model size1148
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.13e-09
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size783
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.6891544-UTR-D-mesarthrocarpus_Contig996:3916..42811680791145.6891544-UTR-D-mesarthrocarpus_Contig996:3916..4281Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig996 3917..4281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.7119403-CDS-D-mesarthrocarpus_Contig996:4281..50641680791145.7119403-CDS-D-mesarthrocarpus_Contig996:4281..5064Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig996 4282..5064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig996.2.1prot_D-mesarthrocarpus_Contig996.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig996 4282..5064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig996.2.1

>prot_D-mesarthrocarpus_Contig996.2.1 ID=prot_D-mesarthrocarpus_Contig996.2.1|Name=mRNA_D-mesarthrocarpus_Contig996.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=261bp
DLPRSRRTRCALHTFSSSRSLSWERLKLVRTTHKKIPPSVLHSSCSHSFL
THDQVDPPNSERSAISILLGSRRTEGSKYLSLIFPPHPCTQSFCYLVTVL
APRWKSDHTGEAENEGYGVTAGANAWDQRGADNNGCTVDGVDGCRPELTR
DFELNFDPNSRWSCSESLGVDTCQLYFDFGSPVELINVRIGFHKGDQRKR
TIKFWNGDVGDESLGTYTSSGSTLGYDVFPVTTDSKNVHRLTIQGRKLKE
DEWLSITKVR*
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mRNA from alignment at D-mesarthrocarpus_Contig996:3917..5064-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig996.2.1 ID=mRNA_D-mesarthrocarpus_Contig996.2.1|Name=mRNA_D-mesarthrocarpus_Contig996.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1148bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig996:3917..5064- (Discosporangium mesarthrocarpum MT17_79)
GACCTTCCGAGATCCCGAAGAACACGATGCGCTTTGCACACATTCTCCTC
GTCGCGTTCGCTCTCATGGGAAAGGCTGAAGCTGGTACGCACGACACACA
AAAAAATTCCGCCCAGCGTATTGCATTCATCGTGCTCACACTCATTCCTC
ACCCACGATCAAGTCGACCCTCCGAACTCCGAGCGAAGCGCAATTTCGAT
CTTGCTAGGGAGCCGAAGGACTGAAGGTAGCAAATACTTGTCCCTTATCT
TCCCGCCCCATCCCTGTACGCAATCATTCTGCTATTTGGTGACCGTCCTC
GCGCCGCGTTGGAAGTCAGACCACACGGGGGAGGCCGAAAACGAAGGATA
TGGTGTGACTGCAGGCGCCAACGCGTGGGACCAGAGAGGTGCAGACAATA
ACGGCTGCACCGTCGATGGTGTGGACGGGTGCAGGCCCGAGCTGACGCGC
GATTTTGAGCTGAATTTCGACCCCAATTCTCGTTGGTCATGCTCCGAATC
CCTGGGTGTCGATACGTGCCAGCTCTACTTCGACTTTGGGTCACCGGTGG
AGCTCATAAATGTGAGGATCGGCTTCCACAAGGGAGACCAGCGCAAGCGC
ACCATCAAGTTCTGGAACGGTGACGTTGGCGACGAGTCCCTGGGCACCTA
CACCTCATCGGGCAGCACACTGGGTTATGATGTGTTCCCCGTTACCACCG
ACAGCAAAAATGTGCATCGCCTGACCATCCAGGGCCGAAAGCTGAAGGAA
GACGAGTGGCTCAGTATCACCAAGGTGAGATGAATTTTCCCACACCATTT
CTTCTTTTTCTTGATCTACCCCAGAGAGACCCAAAGATCTAAGATCTAAG
AACGAGCATTAGCTCTCGAGGGCAATCAACAATTACCTGATGATTAGGTC
CACAACCTGTTGCCCCTTTTTTGAGTGAAACCCTATCACCCCCTTCCCTT
TTTCACAGATCCCCTTCGTCGTAGAGCGGTCTCTCCTCTCGCACATCGAA
GATGGTGCCACCTTCCGCGATAAAATTGGTCCTTACATGTTATGAAGAGA
CCCAGTGTGGATCTGTGGCATTACGGTTTCAGTGTGGATTTTCACCATTT
CAGATGTGGCGTCGAGGTCATCAGTCCTCTTCAGCTTGTATTGACTCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig996:3917..5064-

>mRNA_D-mesarthrocarpus_Contig996.2.1 ID=mRNA_D-mesarthrocarpus_Contig996.2.1|Name=mRNA_D-mesarthrocarpus_Contig996.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=783bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig996:3917..5064- (Discosporangium mesarthrocarpum MT17_79)
GACCTTCCGAGATCCCGAAGAACACGATGCGCTTTGCACACATTCTCCTC
GTCGCGTTCGCTCTCATGGGAAAGGCTGAAGCTGGTACGCACGACACACA
AAAAAATTCCGCCCAGCGTATTGCATTCATCGTGCTCACACTCATTCCTC
ACCCACGATCAAGTCGACCCTCCGAACTCCGAGCGAAGCGCAATTTCGAT
CTTGCTAGGGAGCCGAAGGACTGAAGGTAGCAAATACTTGTCCCTTATCT
TCCCGCCCCATCCCTGTACGCAATCATTCTGCTATTTGGTGACCGTCCTC
GCGCCGCGTTGGAAGTCAGACCACACGGGGGAGGCCGAAAACGAAGGATA
TGGTGTGACTGCAGGCGCCAACGCGTGGGACCAGAGAGGTGCAGACAATA
ACGGCTGCACCGTCGATGGTGTGGACGGGTGCAGGCCCGAGCTGACGCGC
GATTTTGAGCTGAATTTCGACCCCAATTCTCGTTGGTCATGCTCCGAATC
CCTGGGTGTCGATACGTGCCAGCTCTACTTCGACTTTGGGTCACCGGTGG
AGCTCATAAATGTGAGGATCGGCTTCCACAAGGGAGACCAGCGCAAGCGC
ACCATCAAGTTCTGGAACGGTGACGTTGGCGACGAGTCCCTGGGCACCTA
CACCTCATCGGGCAGCACACTGGGTTATGATGTGTTCCCCGTTACCACCG
ACAGCAAAAATGTGCATCGCCTGACCATCCAGGGCCGAAAGCTGAAGGAA
GACGAGTGGCTCAGTATCACCAAGGTGAGATGA
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