mRNA_D-mesarthrocarpus_Contig9956.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9956.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9956.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: A0A2D7FJY8_9PROT (Shikimate dehydrogenase (NADP(+)) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FJY8_9PROT)

HSP 1 Score: 492 bits (1266), Expect = 3.960e-171
Identity = 241/283 (85.16%), Postives = 255/283 (90.11%), Query Frame = 3
Query:  633 MTISGGFTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVRDGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVLAAL 1481
            MTI  GF+GAA VAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIR LP LGIRG+NVT PNKE+AYKAMD VDRWA+RLKAVNTIVVR G+LHGANTDAFGFLESLR AKPDWRADAGPVV+LGAGGAARAIVAGLQD+GAPEIRIANRTP RA AIRDEFG  V+ + WEQR + L D ALLVN TSLGM+GQP L+IDL KLP  A VYDIVYVPLETPLLAAARARGNPA+DGLGMLLHQARPGFREWFG DP VDQALRD+VLA L
Sbjct:    1 MTIFDGFSGAALVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRKLPELGIRGINVTAPNKEQAYKAMDNVDRWARRLKAVNTIVVRGGVLHGANTDAFGFLESLRNAKPDWRADAGPVVVLGAGGAARAIVAGLQDKGAPEIRIANRTPGRAEAIRDEFGGSVRAIPWEQRGHALIDVALLVNATSLGMQGQPELDIDLTKLPDTAAVYDIVYVPLETPLLAAARARGNPAIDGLGMLLHQARPGFREWFGTDPVVDQALRDHVLAVL 283          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: A0A2D8PT32_9PROT (Shikimate dehydrogenase (NADP(+)) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PT32_9PROT)

HSP 1 Score: 446 bits (1148), Expect = 2.800e-153
Identity = 218/274 (79.56%), Postives = 242/274 (88.32%), Query Frame = 3
Query:  651 FTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVRDGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVL 1472
            F+GAA VAGVCGWPIKHSRSPRIHN+WL++YGIDGVYVPFA+ P+ A DA RALP L I G+NVTVPNKEEA++AM E DRWAQRLKAVNTIVVRDG+L G NTDAFGFLESLR ++P WRAD GPVV+LGAGGAARAIVAGLQDEGAP+IRIANRT ERA A+  EFG PV+PV WE RA+ L  + LLVNT+SLGMEGQP L+I L  LPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFR+WFG +P VD+ALRD+VL
Sbjct:    3 FSGAAIVAGVCGWPIKHSRSPRIHNFWLKKYGIDGVYVPFAISPDRAADAFRALPDLDIAGLNVTVPNKEEAFRAMHETDRWAQRLKAVNTIVVRDGVLFGTNTDAFGFLESLRRSQPGWRADKGPVVVLGAGGAARAIVAGLQDEGAPDIRIANRTAERAQALASEFGDPVRPVGWEDRADALDGSVLLVNTSSLGMEGQPPLDIALDALPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFRDWFGTEPEVDEALRDHVL 276          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: A0A520NVJ4_9PROT (Shikimate dehydrogenase (NADP(+)) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NVJ4_9PROT)

HSP 1 Score: 437 bits (1124), Expect = 1.220e-149
Identity = 212/277 (76.53%), Postives = 242/277 (87.36%), Query Frame = 3
Query:  651 FTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVRDGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVLAAL 1481
            FTGAA VAGV GWPI HSRSPRIHNYWLR+Y IDGVYVPFA+ P+GA++A RA+P+LG+ GMNVTVP+KE AYKAMDEVDR AQRLKAVNTIVVRDG+L+G NTDA+GFLESLREA+P WRAD GP V+LGAGGAARAIVAGLQD+GA +I IANRT  RA A++DE G PV+ ++W++RA  L  AAL+VNTTSLGMEGQP L++ L  LP++AVVYDIVYVPLETPLLAAAR RGNPAVDGLGMLLHQARPGFR+WFG DP V Q LRD+VL AL
Sbjct:    3 FTGAATVAGVAGWPITHSRSPRIHNYWLRKYDIDGVYVPFAIDPDGAREAFRAIPSLGLAGMNVTVPHKETAYKAMDEVDRLAQRLKAVNTIVVRDGVLYGVNTDAYGFLESLREAQPSWRADNGPAVVLGAGGAARAIVAGLQDQGATDIFIANRTVARAKALQDELGDPVRSIVWDERAEALDGAALIVNTTSLGMEGQPPLDLTLDALPLDAVVYDIVYVPLETPLLAAARVRGNPAVDGLGMLLHQARPGFRDWFGTDPEVGQVLRDHVLEAL 279          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: A0A2S6QAQ6_9PROT (Shikimate dehydrogenase (NADP(+)) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QAQ6_9PROT)

HSP 1 Score: 406 bits (1043), Expect = 2.320e-137
Identity = 195/277 (70.40%), Postives = 226/277 (81.59%), Query Frame = 3
Query:  651 FTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVRDGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVLAAL 1481
            FTGAA VAGV GWPI H++SPRIHNYWL++YGIDGVYVPFAM P GA +A+R +P+LG+ GMNVTVP KE A++ MDEVD WA++LKAVNTIVVRDG LHG NTDA+GF ESLRE  P WR D GPVV++GAGG AR+IVAGL+D G PEIR+ NRT ER  A++ EFG P++ V WE RA  L  A LLVNTT+LGM GQP L++ L  LP +A V DIVY P+ETPLLAAARARGN  V GLGMLLHQARPGFREWFG DP VD++LRD+VLAAL
Sbjct:    3 FTGAAVVAGVAGWPISHTQSPRIHNYWLQKYGIDGVYVPFAMDPSGAAEALRLIPSLGLAGMNVTVPYKEVAFRVMDEVDLWAKKLKAVNTIVVRDGKLHGTNTDAYGFFESLRETCPTWRGDMGPVVVIGAGGGARSIVAGLKDAGVPEIRVTNRTSERVQALKSEFGMPIEGVSWEMRAEALDGAVLLVNTTTLGMTGQPPLDLPLGALPSDASVCDIVYDPIETPLLAAARARGNVVVGGLGMLLHQARPGFREWFGVDPEVDRSLRDHVLAAL 279          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: A0A2D8G5J6_9PROT (Shikimate dehydrogenase (NADP(+)) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G5J6_9PROT)

HSP 1 Score: 397 bits (1020), Expect = 7.050e-134
Identity = 199/277 (71.84%), Postives = 223/277 (80.51%), Query Frame = 3
Query:  651 FTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVRDGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVLAAL 1481
            FTG A VAGV GWPI HS+SP+IHN+WLR++ IDGVY PFA+ PE A DA R++P LG+ GMNVT+P+KE AY AMD+VD  AQRLKAVNTIVVR G LHGA TD FGF ESLREA P W A+ GP V+LGAGGAARAIVAGLQD GAPEI + NRTP+R  A+ DEFG P++PV WE RA  L+ A LLVN TSLGM GQP L++ L  LP  AVVYDIVYVPLETPLLAAARARGN AVDGLGMLLHQAR GFR+WFG DP V+ ALR YVL AL
Sbjct:    3 FTGGAVVAGVAGWPINHSKSPQIHNFWLRKHEIDGVYAPFAVXPERAYDAFRSIPLLGLAGMNVTLPHKEIAYTAMDKVDHMAQRLKAVNTIVVRRGKLHGAXTDFFGFFESLREACPSWHANTGPAVVLGAGGAARAIVAGLQDAGAPEIFVINRTPQRVEALADEFGPPIRPVPWESRAVALSXANLLVNATSLGMRGQPPLDLPLYALPQFAVVYDIVYVPLETPLLAAARARGNVAVDGLGMLLHQARXGFRDWFGPDPEVNDALRAYVLEAL 279          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: A0A2E5L6C8_9PROT (Shikimate dehydrogenase (NADP(+)) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L6C8_9PROT)

HSP 1 Score: 367 bits (943), Expect = 3.890e-122
Identity = 173/277 (62.45%), Postives = 217/277 (78.34%), Query Frame = 3
Query:  651 FTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVRDGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVLAAL 1481
            FT AA VAG+ GWP+KHSRSPRIHNYW+++YGIDGVY+P  + P  A DA R+LP LGI G+NVT P+KE AYKA+DEVD WA++LKAVNTI +R+G+L+G NTDA+GF+E+L EA P+W A +GP V+LGAGGAARA+VA L  EGAP IR+ NRT +RA  + ++  +P  P+ W +R   +  A L+VNTT LGM GQP+L+I+L+ L  +AVV DIVY PLETP L  AR+RGN  +DGLGMLLHQARPGF+EWFG +P VD  LR+YVLA L
Sbjct:    3 FTSAAVVAGISGWPVKHSRSPRIHNYWIKKYGIDGVYIPLPITPNNAFDAFRSLPGLGIVGLNVTTPHKETAYKAVDEVDEWAEQLKAVNTIAIRNGLLYGTNTDAYGFIEALLEAYPNWSASSGPAVVLGAGGAARAVVAALGAEGAPAIRVLNRTMKRAEKLCEDLRQPAIPIPWAKREKSIEGAKLVVNTTVLGMVGQPSLDIELSNLEADAVVVDIVYNPLETPFLKKARSRGNIGIDGLGMLLHQARPGFKEWFGTEPEVDSKLREYVLADL 279          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: UPI000E6AD330 (shikimate dehydrogenase n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI000E6AD330)

HSP 1 Score: 365 bits (937), Expect = 2.640e-121
Identity = 180/275 (65.45%), Postives = 215/275 (78.18%), Query Frame = 3
Query:  651 FTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVR-DGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVL 1472
             TG AR+AGV GWP+ HSRSPR+H +WLRQ+GIDG YVP A+PP+  + AIRALPALG+RG NVTVP+KE A +A+D +D  A+R+ AVNTI+V  DG L G NTD FGF+E+LRE  P WRADAGP V+LGAGGAARAI+  L +EGAPEIR+ NRT  RA  +  E G P++ V WE+RA+ L+ AALLVNTT+ GM GQPALEI+L+ LP  A+V DIVY PL TPLLAAA+ARGNP VDG+GMLLHQARPGF  WFG DP V   LR +VL
Sbjct:    3 LTGKARIAGVMGWPVGHSRSPRLHGFWLRQHGIDGAYVPLAVPPDRVEQAIRALPALGLRGCNVTVPHKEAALRAVDRLDPVAKRIGAVNTILVHEDGTLEGRNTDGFGFVENLREGAPGWRADAGPAVVLGAGGAARAILVALLEEGAPEIRLTNRTAARAEELAAEIGGPIRIVPWERRADALSGAALLVNTTTQGMTGQPALEIELSDLPATALVTDIVYTPLVTPLLAAAQARGNPVVDGIGMLLHQARPGFAVWFGLDPQVTPELRRFVL 277          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: A0A6N7F9Z5_9PROT (Shikimate dehydrogenase (NADP(+)) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F9Z5_9PROT)

HSP 1 Score: 355 bits (911), Expect = 2.240e-117
Identity = 184/282 (65.25%), Postives = 211/282 (74.82%), Query Frame = 3
Query:  633 MTISGGFTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVRDG-ILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVLA 1475
            MT+SG    AARVAGV GWP+ HSRSP + NYWL +YGIDGVYVPF +PP+G   A+ AL ALGI G+NVTVP+KE A+  MDE D  A R+ AVNT+VV  G  L G NTD +GF+++LR   P WRADAGP V++GAGGAARAIV  L DEGAPEIR+ANRT  RA A+ + FG  V PV WE R++ L  AALLVN TSLGM     L++ L  LP  AVV DIVYVPL+TPLLAAARARG+ AVDGLGMLLHQARPGFR WFG DP V  ALRD VLA
Sbjct:    1 MTVSG----AARVAGVMGWPVAHSRSPLLQNYWLAEYGIDGVYVPFPVPPDGLARALGALGALGIAGVNVTVPHKEAAFALMDECDNAAARMGAVNTVVVGGGGRLRGLNTDGYGFIQNLRAVAPGWRADAGPAVVIGAGGAARAIVCALLDEGAPEIRVANRTAARAEALAEAFGAAVTPVAWEARSHALDGAALLVNATSLGMTRHEPLDLALDALPARAVVTDIVYVPLDTPLLAAARARGHVAVDGLGMLLHQARPGFRAWFGRDPEVTPALRDRVLA 278          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: UPI001A95D030 (shikimate dehydrogenase n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A95D030)

HSP 1 Score: 350 bits (898), Expect = 2.070e-115
Identity = 176/274 (64.23%), Postives = 205/274 (74.82%), Query Frame = 3
Query:  654 TGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVVR-DGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVL 1472
            +G A VAGV GWP+ HSRSPR+H +WLR+YGIDG YVP A+PP+  + A+RALPALG+RG NVT+P+KE    A+D V+  A+R+ AVNTIVV  DG L G NTD FGF+E+LR   P WRA AGP V+LGAGGAARAI+  L D GAPEIR+ NRT +RA  + DE G PV+ + WE R   L  AAL+VNTTS GM G P L+I L  LP +AVV DIVY PLETPLLAAARARGNP VDGLGMLLHQARPGF  WFG  P V  ALR +VL
Sbjct:    4 SGKALVAGVMGWPVGHSRSPRLHGFWLREYGIDGAYVPLAVPPDRIEQAVRALPALGLRGANVTIPHKEAVVAALDRVEPAARRIGAVNTIVVLPDGTLEGRNTDGFGFIENLRAGAPGWRAVAGPAVVLGAGGAARAILVALADAGAPEIRLLNRTADRADRLADELGGPVRVLPWEARPAALDGAALVVNTTSQGMAGHPPLDIGLGALPPDAVVTDIVYTPLETPLLAAARARGNPVVDGLGMLLHQARPGFEAWFGRRPEVTPALRAFVL 277          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Match: UPI001B3B860E (shikimate dehydrogenase n=3 Tax=Skermanella TaxID=204447 RepID=UPI001B3B860E)

HSP 1 Score: 346 bits (887), Expect = 9.460e-114
Identity = 172/278 (61.87%), Postives = 205/278 (73.74%), Query Frame = 3
Query:  651 FTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPPEGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVV-RDGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQDEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTTSLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGLGMLLHQARPGFREWFGADPAVDQALRDYVLAAL 1481
             T  A VAGV GWP+ HSRSPR+H +WL +YGIDG Y+P A+PP+   +A+RALPALG+RG NVTVP+KE    A D VD  A+R+ AVNT+VV  DG + G NTDAFGF+E+LR  +PDWRA AGP V+LGAGGAARAI+  L D GAPEIR+ NRT +RA  +  E G PV+ + WE+RA  L  AAL+VNTT+ GM GQPAL++DL +LP  A+V DIVY PL TPLL AA  RGNP VDGLGMLLHQARPGF  WFG  P V   LR +VL  L
Sbjct:    3 LTAKAVVAGVMGWPVGHSRSPRLHGWWLDRYGIDGAYIPLAVPPDRVAEAVRALPALGLRGANVTVPHKEAVIAACDRVDPVARRIGAVNTLVVAEDGTIEGRNTDAFGFMENLRADRPDWRAGAGPAVVLGAGGAARAILVALADAGAPEIRLLNRTRDRAETLASELGGPVRVLPWEERAFALDGAALVVNTTTQGMGGQPALDLDLGRLPPAALVTDIVYTPLHTPLLKAAMERGNPVVDGLGMLLHQARPGFEAWFGRVPEVTPELRRFVLEGL 280          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9956.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FJY8_9PROT3.960e-17185.16Shikimate dehydrogenase (NADP(+)) n=1 Tax=Rhodospi... [more]
A0A2D8PT32_9PROT2.800e-15379.56Shikimate dehydrogenase (NADP(+)) n=1 Tax=Rhodospi... [more]
A0A520NVJ4_9PROT1.220e-14976.53Shikimate dehydrogenase (NADP(+)) n=1 Tax=Rhodospi... [more]
A0A2S6QAQ6_9PROT2.320e-13770.40Shikimate dehydrogenase (NADP(+)) n=1 Tax=Alphapro... [more]
A0A2D8G5J6_9PROT7.050e-13471.84Shikimate dehydrogenase (NADP(+)) n=1 Tax=Alphapro... [more]
A0A2E5L6C8_9PROT3.890e-12262.45Shikimate dehydrogenase (NADP(+)) n=1 Tax=Rhodospi... [more]
UPI000E6AD3302.640e-12165.45shikimate dehydrogenase n=1 Tax=Indioceanicola pro... [more]
A0A6N7F9Z5_9PROT2.240e-11765.25Shikimate dehydrogenase (NADP(+)) n=1 Tax=Alphapro... [more]
UPI001A95D0302.070e-11564.23shikimate dehydrogenase n=1 Tax=Arenibaculum palli... [more]
UPI001B3B860E9.460e-11461.87shikimate dehydrogenase n=3 Tax=Skermanella TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9956contigD-mesarthrocarpus_Contig9956:2657..4140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog414684.RC1_2801
Preferred namearoE
PFAMsShikimate_DH,Shikimate_dh_N
Model size1484
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00206
KEGG koko:K00014
KEGG ReactionR02413
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-110
EggNOG OGsCOG0169@1|root,COG0169@2|Bacteria,1MVH4@1224|Proteobacteria,2TS99@28211|Alphaproteobacteria,2JPBD@204441|Rhodospirillales
EC1.1.1.25
DescriptionInvolved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Cds size852
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.486544-CDS-D-mesarthrocarpus_Contig9956:2656..35081680791145.486544-CDS-D-mesarthrocarpus_Contig9956:2656..3508Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9956 2657..3508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.5023508-UTR-D-mesarthrocarpus_Contig9956:3508..41401680791145.5023508-UTR-D-mesarthrocarpus_Contig9956:3508..4140Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9956 3509..4140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9956.3.1prot_D-mesarthrocarpus_Contig9956.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9956 2657..3508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9956.3.1

>prot_D-mesarthrocarpus_Contig9956.3.1 ID=prot_D-mesarthrocarpus_Contig9956.3.1|Name=mRNA_D-mesarthrocarpus_Contig9956.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=284bp
MTISGGFTGAARVAGVCGWPIKHSRSPRIHNYWLRQYGIDGVYVPFAMPP
EGAKDAIRALPALGIRGMNVTVPNKEEAYKAMDEVDRWAQRLKAVNTIVV
RDGILHGANTDAFGFLESLREAKPDWRADAGPVVILGAGGAARAIVAGLQ
DEGAPEIRIANRTPERAAAIRDEFGKPVQPVLWEQRANVLADAALLVNTT
SLGMEGQPALEIDLAKLPVEAVVYDIVYVPLETPLLAAARARGNPAVDGL
GMLLHQARPGFREWFGADPAVDQALRDYVLAAL*
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mRNA from alignment at D-mesarthrocarpus_Contig9956:2657..4140-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9956.3.1 ID=mRNA_D-mesarthrocarpus_Contig9956.3.1|Name=mRNA_D-mesarthrocarpus_Contig9956.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1484bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9956:2657..4140- (Discosporangium mesarthrocarpum MT17_79)
ATCGCCGATCCTCAGCTTCGGTTTATCGGCCCGTCCGAAAATCCGATCGT GCTTGCCTCGGCAAGCATGACACGCCGCAGCCTGCTGGAAGGGGCTGGTG TGCCGCATGTTGTCGAAGCATCCCGCGTCGATGAAGAAGAAATCAAAATC AGTCTGCGGGCAGAGGGTGCAAATGGAACGGAGATTGCGGAAGTCCTGGC TGACGCCAAGGCCATGTATGTATCTCGCAAGCACCCCGATAATTTGGTTC TCGGCGCGGACCAGATTCTGGAATGCGACGGTGATACGTTCGATAAACCG GTCGATCGTAGCGATGCATTTGGTCAGTTGCAGGCCCTGCGTGGGAAACG CCATCGATTGATCTCCTATGCGGTTATGGCGCGCGGTGGTCAGCGGATCT GGCAGGCAGTCGATCACGCAACGCTCGAAGTTCGCGCCGATGCAAGCGAT GGCTTTCTTGACGCATATCTGGATGCGGCCGGTGATGACGCGTTCAACGG ACCCGGCGGCTATCGGATAGAATCCCTCGGCGTTCAGTTGTTTTCGCGGA TCGACGGCAGCCATTCCACTATTCTGGGCTTGCCGATGCTGGCGCTGCTC GGCTATCTGCGGGCAAACGGAGTATTGAAGACATGACCATTTCTGGGGGG TTTACCGGCGCGGCACGCGTCGCCGGTGTCTGCGGCTGGCCGATCAAGCA TTCGCGTTCGCCGCGCATTCACAATTACTGGCTGCGCCAATACGGCATTG ACGGTGTCTATGTGCCCTTTGCGATGCCGCCCGAAGGCGCTAAAGACGCG ATACGAGCGCTCCCGGCGCTCGGGATTCGCGGCATGAACGTCACCGTGCC CAATAAAGAAGAAGCTTACAAAGCGATGGACGAGGTCGATCGCTGGGCAC AGCGGCTGAAAGCGGTCAATACAATCGTGGTCCGCGACGGTATTCTCCAT GGCGCCAATACGGATGCGTTCGGCTTTCTGGAATCTTTACGCGAGGCGAA ACCGGACTGGCGCGCCGATGCGGGACCTGTTGTGATCCTTGGCGCCGGCG GTGCCGCCCGGGCGATTGTTGCCGGATTGCAGGATGAAGGCGCGCCGGAA ATACGTATCGCCAACCGCACGCCTGAACGCGCCGCCGCTATCCGCGACGA ATTCGGCAAACCGGTACAGCCGGTGCTATGGGAGCAGCGCGCCAATGTGC TGGCCGATGCCGCCCTTCTGGTGAACACGACCTCGCTCGGCATGGAAGGC CAGCCCGCGCTGGAGATCGATCTTGCGAAACTGCCGGTGGAGGCGGTGGT CTATGACATTGTCTATGTGCCGCTGGAAACACCGCTGCTCGCTGCCGCGC GGGCCCGTGGTAATCCGGCAGTCGACGGGCTTGGCATGCTGCTGCATCAG GCGCGCCCGGGTTTTCGCGAATGGTTCGGCGCCGACCCGGCTGTTGATCA GGCGCTACGCGATTATGTGCTGGCGGCGCTTTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9956:2657..4140-

>mRNA_D-mesarthrocarpus_Contig9956.3.1 ID=mRNA_D-mesarthrocarpus_Contig9956.3.1|Name=mRNA_D-mesarthrocarpus_Contig9956.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=852bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9956:2657..4140- (Discosporangium mesarthrocarpum MT17_79)
ATGACCATTTCTGGGGGGTTTACCGGCGCGGCACGCGTCGCCGGTGTCTG
CGGCTGGCCGATCAAGCATTCGCGTTCGCCGCGCATTCACAATTACTGGC
TGCGCCAATACGGCATTGACGGTGTCTATGTGCCCTTTGCGATGCCGCCC
GAAGGCGCTAAAGACGCGATACGAGCGCTCCCGGCGCTCGGGATTCGCGG
CATGAACGTCACCGTGCCCAATAAAGAAGAAGCTTACAAAGCGATGGACG
AGGTCGATCGCTGGGCACAGCGGCTGAAAGCGGTCAATACAATCGTGGTC
CGCGACGGTATTCTCCATGGCGCCAATACGGATGCGTTCGGCTTTCTGGA
ATCTTTACGCGAGGCGAAACCGGACTGGCGCGCCGATGCGGGACCTGTTG
TGATCCTTGGCGCCGGCGGTGCCGCCCGGGCGATTGTTGCCGGATTGCAG
GATGAAGGCGCGCCGGAAATACGTATCGCCAACCGCACGCCTGAACGCGC
CGCCGCTATCCGCGACGAATTCGGCAAACCGGTACAGCCGGTGCTATGGG
AGCAGCGCGCCAATGTGCTGGCCGATGCCGCCCTTCTGGTGAACACGACC
TCGCTCGGCATGGAAGGCCAGCCCGCGCTGGAGATCGATCTTGCGAAACT
GCCGGTGGAGGCGGTGGTCTATGACATTGTCTATGTGCCGCTGGAAACAC
CGCTGCTCGCTGCCGCGCGGGCCCGTGGTAATCCGGCAGTCGACGGGCTT
GGCATGCTGCTGCATCAGGCGCGCCCGGGTTTTCGCGAATGGTTCGGCGC
CGACCCGGCTGTTGATCAGGCGCTACGCGATTATGTGCTGGCGGCGCTTT
AG
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