mRNA_D-mesarthrocarpus_Contig9956.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9956.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9956.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2D7FJY5_9PROT (Protein-export protein SecB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FJY5_9PROT)

HSP 1 Score: 280 bits (717), Expect = 3.630e-95
Identity = 138/146 (94.52%), Postives = 143/146 (97.95%), Query Frame = 1
Query:   46 MEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
            M+  PFMIGAQYIKDFSFENPRGIETLSAIQ+NPDVSVDVSTNARAIGEEGM+EVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFG LYVEQHVDS+G+DI
Sbjct:    1 MDSAPFMIGAQYIKDFSFENPRGIETLSAIQDNPDVSVDVSTNARAIGEEGMYEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGTLYVEQHVDSNGSDI 146          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A3D2BTB0_9PROT (Protein-export protein SecB n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BTB0_9PROT)

HSP 1 Score: 276 bits (706), Expect = 2.880e-93
Identity = 130/161 (80.75%), Postives = 148/161 (91.93%), Query Frame = 1
Query:    1 IPMENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
            +P+ENGANGADEN     VPFMIGAQYIKD SFENPRGIETLSA+Q+NPDV+VDVSTNAR IGEEGMFEV +FIRAEA +ED PVFIVELTY G+VQV G+PE+++KP+VLIEGPRHLFPFAR+I+SNAVRDGGFPPLLINPIDF AL+++QHVDSDGADI
Sbjct:    1 MPIENGANGADENAGENSVPFMIGAQYIKDLSFENPRGIETLSAVQQNPDVNVDVSTNARPIGEEGMFEVSVFIRAEASLEDAPVFIVELTYSGIVQVSGVPEDDVKPIVLIEGPRHLFPFARTIISNAVRDGGFPPLLINPIDFAALFIDQHVDSDGADI 161          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2E5L6H6_9PROT (Protein-export protein SecB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L6H6_9PROT)

HSP 1 Score: 261 bits (666), Expect = 4.410e-87
Identity = 122/161 (75.78%), Postives = 145/161 (90.06%), Query Frame = 1
Query:    1 IPMENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
            +P+ENGANGA +N     VPFMIGAQYIKDFSFENPRGIETLS  Q+N +V VDV+TNAR+I +EG+FEV +F+RAEA  +D+PVFIVELTY G+VQV GIPE++++P+VLIEGPRHLFPFARSIVSNAVRDGGFPPL+INPIDFGALYVEQHVD++G+DI
Sbjct:    7 VPLENGANGAQDNNTENTVPFMIGAQYIKDFSFENPRGIETLSIAQQNMEVDVDVTTNARSINDEGVFEVSVFVRAEATHDDSPVFIVELTYSGIVQVSGIPEDDVRPIVLIEGPRHLFPFARSIVSNAVRDGGFPPLMINPIDFGALYVEQHVDAEGSDI 167          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2D8PT47_9PROT (Protein-export protein SecB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PT47_9PROT)

HSP 1 Score: 258 bits (658), Expect = 3.830e-86
Identity = 126/145 (86.90%), Postives = 135/145 (93.10%), Query Frame = 1
Query:   49 EGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
            EGVPFMIGAQYIKD SFENPRGIETL+AIQ+NPDVSVDVSTNA AIGEEGMFEV +FIRAEA V+ NPVFIVELTY GVVQV G+ EEE+KPVVLI GPRHLFPFARSIVSNAVRDGGFPPLLINPIDF ALY+EQHVDS+G+DI
Sbjct:    4 EGVPFMIGAQYIKDLSFENPRGIETLTAIQQNPDVSVDVSTNAHAIGEEGMFEVSVFIRAEAAVDANPVFIVELTYAGVVQVSGVAEEEVKPVVLIXGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFAALYIEQHVDSEGSDI 148          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2D8G5N6_9PROT (Protein-export protein SecB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G5N6_9PROT)

HSP 1 Score: 249 bits (636), Expect = 1.640e-82
Identity = 118/159 (74.21%), Postives = 140/159 (88.05%), Query Frame = 1
Query:    7 MENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
            ++N  NG   + +   VP  IGAQYIKD SFENPRGIETLSAIQ NPDV+VDVSTNAR++GEEGMFEV +FIRAEA V+D PVFIVELTY G++QV  +PEE+IKP+VLIEGP+HLFPFAR+I+SNAVRDGGFPPLLINPIDFGALY+EQH++S+G+DI
Sbjct:    9 IKNVGNGTGVDPDQGSVPLGIGAQYIKDLSFENPRGIETLSAIQNNPDVNVDVSTNARSVGEEGMFEVSVFIRAEATVDDAPVFIVELTYSGIIQVSDVPEEDIKPIVLIEGPKHLFPFARAIISNAVRDGGFPPLLINPIDFGALYIEQHINSNGSDI 167          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2S6QAL3_9PROT (Protein-export protein SecB n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QAL3_9PROT)

HSP 1 Score: 238 bits (608), Expect = 3.020e-78
Identity = 114/158 (72.15%), Postives = 136/158 (86.08%), Query Frame = 1
Query:   10 ENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
            +N  N +  +   +  PF+I AQYIKD SFENPRG+E LSAIQ+NPDVSVDV TNA+ +GE+G+FEV +FIRAEA +ED PVFIVELTY G+VQV G+ EEE+KP+VLIEGPRHLFPFAR+IVSNAVRDGGFPPL+INPIDF AL++EQHVDSDG+DI
Sbjct:   10 DNATNISGADTSEDAGPFLIIAQYIKDLSFENPRGMEALSAIQQNPDVSVDVRTNAQPLGEDGLFEVSVFIRAEATLEDVPVFIVELTYSGIVQVSGVQEEEVKPIVLIEGPRHLFPFARAIVSNAVRDGGFPPLMINPIDFSALFIEQHVDSDGSDI 167          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: UPI001A96F68F (protein-export chaperone SecB n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A96F68F)

HSP 1 Score: 162 bits (410), Expect = 4.110e-48
Identity = 80/145 (55.17%), Postives = 101/145 (69.66%), Query Frame = 1
Query:   22 NGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQ 456
            NG DENG    +P MI AQY+KD SFE+P    +L   Q  P V + V    + +GE+ +FEV L IRAEA+  D  VFIVEL+YGG+  + GIP+E ++PV++IEGPR LFPFAR+IVS   RDGGFPPL++NPIDF  LY  Q
Sbjct:   11 NGNDENGGPAALPIMINAQYVKDLSFESPNAPHSLLPNQPQPQVDIGVDVRPQQLGED-VFEVTLAIRAEAKAADKTVFIVELSYGGIFTLKGIPQEHLRPVLMIEGPRLLFPFARAIVSETTRDGGFPPLMLNPIDFAELYRRQ 154          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2E6GSN9_9PROT (Protein-export protein SecB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GSN9_9PROT)

HSP 1 Score: 156 bits (394), Expect = 1.130e-45
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   76 QYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGA 477
            QYIKD SFENP G      + ++P+V V+V+T+ARA+ E+GM+EV L IR EA+  +  VFIVELTY GV+ +  +PE+ I P++LIEG R LFPFAR+IV++  RDGGFPPL INPIDF  LY EQH+D   A
Sbjct:   32 QYIKDLSFENPVGPNAPQIVGQSPEVGVEVTTSARAL-EDGMYEVTLVIRGEAKTPETTVFIVELTYAGVLTIADVPEDAIGPILLIEGARLLFPFARNIVADVSRDGGFPPLFINPIDFVQLYREQHLDEGAA 164          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A6N7FCB4_9PROT (Protein-export protein SecB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FCB4_9PROT)

HSP 1 Score: 155 bits (392), Expect = 2.350e-45
Identity = 80/161 (49.69%), Postives = 112/161 (69.57%), Query Frame = 1
Query:    4 PMENG----ANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDG 474
            P ENG    A GAD   +M      I  QY+KD SFEN +G  T  A+Q+NPDV ++++TNAR + + G +EV LFIRAEA+ +D P+FI ELTY GV  +  +P++ +  V+LIEGPR LFPFAR+I+++A R+GG PPLLINP+DF  L+ ++  ++ G
Sbjct:   11 PAENGDAAEAAGADLAPQMG-----IELQYVKDLSFENLQGPNTPDAVQQNPDVRIEINTNARPL-DAGRYEVTLFIRAEAKTKDAPIFIAELTYAGVFVLANVPDDALSAVLLIEGPRLLFPFARNIIADATREGGVPPLLINPVDFVQLFQDRQAEAAG 165          
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A3S0IGP3_9PROT (Protein-export protein SecB n=1 Tax=Azospirillum griseum TaxID=2496639 RepID=A0A3S0IGP3_9PROT)

HSP 1 Score: 154 bits (390), Expect = 3.690e-45
Identity = 76/146 (52.05%), Postives = 107/146 (73.29%), Query Frame = 1
Query:   19 ANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQ 456
            +N AD++ +   +P  I AQY+KDFSFENP   ++L   Q  P VS+ V   A+A+GE+ ++EV+L +R EA+ ED+  F+VEL+YG + Q+ G+P+E  +PV++IEGPR LFPFARSI+S A R+GG+PPL+INPIDF  LY  Q
Sbjct:    6 SNDADQS-QASSLPMNILAQYVKDFSFENPNAPQSLLPNQPQPQVSIGVDVQAQAVGED-IYEVILQLRCEARQEDSVAFLVELSYGALFQLPGLPKEHHRPVLMIEGPRMLFPFARSIISTATREGGYPPLMINPIDFADLYRRQ 149          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FJY5_9PROT3.630e-9594.52Protein-export protein SecB n=1 Tax=Rhodospirillac... [more]
A0A3D2BTB0_9PROT2.880e-9380.75Protein-export protein SecB n=2 Tax=Rhodospirillac... [more]
A0A2E5L6H6_9PROT4.410e-8775.78Protein-export protein SecB n=1 Tax=Rhodospirillac... [more]
A0A2D8PT47_9PROT3.830e-8686.90Protein-export protein SecB n=1 Tax=Rhodospirillac... [more]
A0A2D8G5N6_9PROT1.640e-8274.21Protein-export protein SecB n=1 Tax=Alphaproteobac... [more]
A0A2S6QAL3_9PROT3.020e-7872.15Protein-export protein SecB n=1 Tax=Alphaproteobac... [more]
UPI001A96F68F4.110e-4855.17protein-export chaperone SecB n=1 Tax=Arenibaculum... [more]
A0A2E6GSN9_9PROT1.130e-4557.46Protein-export protein SecB n=1 Tax=Rhodospirillac... [more]
A0A6N7FCB4_9PROT2.350e-4549.69Protein-export protein SecB n=1 Tax=Alphaproteobac... [more]
A0A3S0IGP3_9PROT3.690e-4552.05Protein-export protein SecB n=1 Tax=Azospirillum g... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9956contigD-mesarthrocarpus_Contig9956:583..1068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121033.AUCF01000003_gene3408
Preferred namesecB
PFAMsSecB
Model size486
Max annot lvl204441|Rhodospirillales
KEGG koko:K03071
KEGG TC3.A.5
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.64e-42
EggNOG OGsCOG1952@1|root,COG1952@2|Bacteria,1RI75@1224|Proteobacteria,2UBTB@28211|Alphaproteobacteria,2JTCQ@204441|Rhodospirillales
DescriptionOne of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
Cds size480
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.3830187-UTR-D-mesarthrocarpus_Contig9956:582..5881680791145.3830187-UTR-D-mesarthrocarpus_Contig9956:582..588Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9956 583..588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.3991868-CDS-D-mesarthrocarpus_Contig9956:588..10681680791145.3991868-CDS-D-mesarthrocarpus_Contig9956:588..1068Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9956 589..1068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9956.1.1prot_D-mesarthrocarpus_Contig9956.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9956 589..1068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9956.1.1

>prot_D-mesarthrocarpus_Contig9956.1.1 ID=prot_D-mesarthrocarpus_Contig9956.1.1|Name=mRNA_D-mesarthrocarpus_Contig9956.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=160bp
MENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVS
VDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIP
EEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQ
HVDSDGADI*
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mRNA from alignment at D-mesarthrocarpus_Contig9956:583..1068+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9956.1.1 ID=mRNA_D-mesarthrocarpus_Contig9956.1.1|Name=mRNA_D-mesarthrocarpus_Contig9956.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=486bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9956:583..1068+ (Discosporangium mesarthrocarpum MT17_79)
ATCCCGATGGAAAACGGCGCCAATGGCGCGGATGAAAATGGCGAGATGGA GGGCGTGCCCTTCATGATCGGCGCGCAGTACATCAAGGATTTTTCGTTTG AAAACCCGCGCGGGATCGAAACCCTCTCGGCGATCCAGGAAAACCCGGAT GTCAGCGTCGATGTCAGCACCAATGCGCGGGCCATCGGCGAAGAAGGTAT GTTCGAAGTCCTGCTGTTTATCCGCGCCGAGGCCCAGGTCGAAGACAACC CGGTCTTTATCGTGGAACTGACCTATGGCGGCGTCGTCCAGGTCGGCGGT ATTCCGGAAGAAGAGATCAAGCCCGTGGTCCTGATCGAAGGTCCGCGTCA CCTATTCCCGTTCGCCCGTTCTATCGTCTCGAACGCAGTGCGCGACGGCG GATTTCCCCCGCTGCTGATCAACCCGATCGACTTCGGCGCGCTCTATGTC GAACAACATGTCGATTCAGACGGGGCCGATATCTAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9956:583..1068+

>mRNA_D-mesarthrocarpus_Contig9956.1.1 ID=mRNA_D-mesarthrocarpus_Contig9956.1.1|Name=mRNA_D-mesarthrocarpus_Contig9956.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=480bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9956:583..1068+ (Discosporangium mesarthrocarpum MT17_79)
ATGGAAAACGGCGCCAATGGCGCGGATGAAAATGGCGAGATGGAGGGCGT
GCCCTTCATGATCGGCGCGCAGTACATCAAGGATTTTTCGTTTGAAAACC
CGCGCGGGATCGAAACCCTCTCGGCGATCCAGGAAAACCCGGATGTCAGC
GTCGATGTCAGCACCAATGCGCGGGCCATCGGCGAAGAAGGTATGTTCGA
AGTCCTGCTGTTTATCCGCGCCGAGGCCCAGGTCGAAGACAACCCGGTCT
TTATCGTGGAACTGACCTATGGCGGCGTCGTCCAGGTCGGCGGTATTCCG
GAAGAAGAGATCAAGCCCGTGGTCCTGATCGAAGGTCCGCGTCACCTATT
CCCGTTCGCCCGTTCTATCGTCTCGAACGCAGTGCGCGACGGCGGATTTC
CCCCGCTGCTGATCAACCCGATCGACTTCGGCGCGCTCTATGTCGAACAA
CATGTCGATTCAGACGGGGCCGATATCTAA
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