mRNA_D-mesarthrocarpus_Contig9956.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
|
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2D7FJY5_9PROT (Protein-export protein SecB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FJY5_9PROT) HSP 1 Score: 280 bits (717), Expect = 3.630e-95 Identity = 138/146 (94.52%), Postives = 143/146 (97.95%), Query Frame = 1
Query: 46 MEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
M+ PFMIGAQYIKDFSFENPRGIETLSAIQ+NPDVSVDVSTNARAIGEEGM+EVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFG LYVEQHVDS+G+DI
Sbjct: 1 MDSAPFMIGAQYIKDFSFENPRGIETLSAIQDNPDVSVDVSTNARAIGEEGMYEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGTLYVEQHVDSNGSDI 146
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A3D2BTB0_9PROT (Protein-export protein SecB n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BTB0_9PROT) HSP 1 Score: 276 bits (706), Expect = 2.880e-93 Identity = 130/161 (80.75%), Postives = 148/161 (91.93%), Query Frame = 1
Query: 1 IPMENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
+P+ENGANGADEN VPFMIGAQYIKD SFENPRGIETLSA+Q+NPDV+VDVSTNAR IGEEGMFEV +FIRAEA +ED PVFIVELTY G+VQV G+PE+++KP+VLIEGPRHLFPFAR+I+SNAVRDGGFPPLLINPIDF AL+++QHVDSDGADI
Sbjct: 1 MPIENGANGADENAGENSVPFMIGAQYIKDLSFENPRGIETLSAVQQNPDVNVDVSTNARPIGEEGMFEVSVFIRAEASLEDAPVFIVELTYSGIVQVSGVPEDDVKPIVLIEGPRHLFPFARTIISNAVRDGGFPPLLINPIDFAALFIDQHVDSDGADI 161
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2E5L6H6_9PROT (Protein-export protein SecB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L6H6_9PROT) HSP 1 Score: 261 bits (666), Expect = 4.410e-87 Identity = 122/161 (75.78%), Postives = 145/161 (90.06%), Query Frame = 1
Query: 1 IPMENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
+P+ENGANGA +N VPFMIGAQYIKDFSFENPRGIETLS Q+N +V VDV+TNAR+I +EG+FEV +F+RAEA +D+PVFIVELTY G+VQV GIPE++++P+VLIEGPRHLFPFARSIVSNAVRDGGFPPL+INPIDFGALYVEQHVD++G+DI
Sbjct: 7 VPLENGANGAQDNNTENTVPFMIGAQYIKDFSFENPRGIETLSIAQQNMEVDVDVTTNARSINDEGVFEVSVFVRAEATHDDSPVFIVELTYSGIVQVSGIPEDDVRPIVLIEGPRHLFPFARSIVSNAVRDGGFPPLMINPIDFGALYVEQHVDAEGSDI 167
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2D8PT47_9PROT (Protein-export protein SecB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PT47_9PROT) HSP 1 Score: 258 bits (658), Expect = 3.830e-86 Identity = 126/145 (86.90%), Postives = 135/145 (93.10%), Query Frame = 1
Query: 49 EGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
EGVPFMIGAQYIKD SFENPRGIETL+AIQ+NPDVSVDVSTNA AIGEEGMFEV +FIRAEA V+ NPVFIVELTY GVVQV G+ EEE+KPVVLI GPRHLFPFARSIVSNAVRDGGFPPLLINPIDF ALY+EQHVDS+G+DI
Sbjct: 4 EGVPFMIGAQYIKDLSFENPRGIETLTAIQQNPDVSVDVSTNAHAIGEEGMFEVSVFIRAEAAVDANPVFIVELTYAGVVQVSGVAEEEVKPVVLIXGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFAALYIEQHVDSEGSDI 148
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2D8G5N6_9PROT (Protein-export protein SecB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G5N6_9PROT) HSP 1 Score: 249 bits (636), Expect = 1.640e-82 Identity = 118/159 (74.21%), Postives = 140/159 (88.05%), Query Frame = 1
Query: 7 MENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
++N NG + + VP IGAQYIKD SFENPRGIETLSAIQ NPDV+VDVSTNAR++GEEGMFEV +FIRAEA V+D PVFIVELTY G++QV +PEE+IKP+VLIEGP+HLFPFAR+I+SNAVRDGGFPPLLINPIDFGALY+EQH++S+G+DI
Sbjct: 9 IKNVGNGTGVDPDQGSVPLGIGAQYIKDLSFENPRGIETLSAIQNNPDVNVDVSTNARSVGEEGMFEVSVFIRAEATVDDAPVFIVELTYSGIIQVSDVPEEDIKPIVLIEGPKHLFPFARAIISNAVRDGGFPPLLINPIDFGALYIEQHINSNGSDI 167
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2S6QAL3_9PROT (Protein-export protein SecB n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QAL3_9PROT) HSP 1 Score: 238 bits (608), Expect = 3.020e-78 Identity = 114/158 (72.15%), Postives = 136/158 (86.08%), Query Frame = 1
Query: 10 ENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGADI 483
+N N + + + PF+I AQYIKD SFENPRG+E LSAIQ+NPDVSVDV TNA+ +GE+G+FEV +FIRAEA +ED PVFIVELTY G+VQV G+ EEE+KP+VLIEGPRHLFPFAR+IVSNAVRDGGFPPL+INPIDF AL++EQHVDSDG+DI
Sbjct: 10 DNATNISGADTSEDAGPFLIIAQYIKDLSFENPRGMEALSAIQQNPDVSVDVRTNAQPLGEDGLFEVSVFIRAEATLEDVPVFIVELTYSGIVQVSGVQEEEVKPIVLIEGPRHLFPFARAIVSNAVRDGGFPPLMINPIDFSALFIEQHVDSDGSDI 167
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: UPI001A96F68F (protein-export chaperone SecB n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A96F68F) HSP 1 Score: 162 bits (410), Expect = 4.110e-48 Identity = 80/145 (55.17%), Postives = 101/145 (69.66%), Query Frame = 1
Query: 22 NGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQ 456
NG DENG +P MI AQY+KD SFE+P +L Q P V + V + +GE+ +FEV L IRAEA+ D VFIVEL+YGG+ + GIP+E ++PV++IEGPR LFPFAR+IVS RDGGFPPL++NPIDF LY Q
Sbjct: 11 NGNDENGGPAALPIMINAQYVKDLSFESPNAPHSLLPNQPQPQVDIGVDVRPQQLGED-VFEVTLAIRAEAKAADKTVFIVELSYGGIFTLKGIPQEHLRPVLMIEGPRLLFPFARAIVSETTRDGGFPPLMLNPIDFAELYRRQ 154
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A2E6GSN9_9PROT (Protein-export protein SecB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GSN9_9PROT) HSP 1 Score: 156 bits (394), Expect = 1.130e-45 Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = 1
Query: 76 QYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDGA 477
QYIKD SFENP G + ++P+V V+V+T+ARA+ E+GM+EV L IR EA+ + VFIVELTY GV+ + +PE+ I P++LIEG R LFPFAR+IV++ RDGGFPPL INPIDF LY EQH+D A
Sbjct: 32 QYIKDLSFENPVGPNAPQIVGQSPEVGVEVTTSARAL-EDGMYEVTLVIRGEAKTPETTVFIVELTYAGVLTIADVPEDAIGPILLIEGARLLFPFARNIVADVSRDGGFPPLFINPIDFVQLYREQHLDEGAA 164
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A6N7FCB4_9PROT (Protein-export protein SecB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FCB4_9PROT) HSP 1 Score: 155 bits (392), Expect = 2.350e-45 Identity = 80/161 (49.69%), Postives = 112/161 (69.57%), Query Frame = 1
Query: 4 PMENG----ANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQHVDSDG 474
P ENG A GAD +M I QY+KD SFEN +G T A+Q+NPDV ++++TNAR + + G +EV LFIRAEA+ +D P+FI ELTY GV + +P++ + V+LIEGPR LFPFAR+I+++A R+GG PPLLINP+DF L+ ++ ++ G
Sbjct: 11 PAENGDAAEAAGADLAPQMG-----IELQYVKDLSFENLQGPNTPDAVQQNPDVRIEINTNARPL-DAGRYEVTLFIRAEAKTKDAPIFIAELTYAGVFVLANVPDDALSAVLLIEGPRLLFPFARNIIADATREGGVPPLLINPVDFVQLFQDRQAEAAG 165
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Match: A0A3S0IGP3_9PROT (Protein-export protein SecB n=1 Tax=Azospirillum griseum TaxID=2496639 RepID=A0A3S0IGP3_9PROT) HSP 1 Score: 154 bits (390), Expect = 3.690e-45 Identity = 76/146 (52.05%), Postives = 107/146 (73.29%), Query Frame = 1
Query: 19 ANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSVDVSTNARAIGEEGMFEVLLFIRAEAQVEDNPVFIVELTYGGVVQVGGIPEEEIKPVVLIEGPRHLFPFARSIVSNAVRDGGFPPLLINPIDFGALYVEQ 456
+N AD++ + +P I AQY+KDFSFENP ++L Q P VS+ V A+A+GE+ ++EV+L +R EA+ ED+ F+VEL+YG + Q+ G+P+E +PV++IEGPR LFPFARSI+S A R+GG+PPL+INPIDF LY Q
Sbjct: 6 SNDADQS-QASSLPMNILAQYVKDFSFENPNAPQSLLPNQPQPQVSIGVDVQAQAVGED-IYEVILQLRCEARQEDSVAFLVELSYGALFQLPGLPKEHHRPVLMIEGPRMLFPFARSIISTATREGGYPPLMINPIDFADLYRRQ 149 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9956.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9956.1.1 >prot_D-mesarthrocarpus_Contig9956.1.1 ID=prot_D-mesarthrocarpus_Contig9956.1.1|Name=mRNA_D-mesarthrocarpus_Contig9956.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=160bp MENGANGADENGEMEGVPFMIGAQYIKDFSFENPRGIETLSAIQENPDVSback to top mRNA from alignment at D-mesarthrocarpus_Contig9956:583..1068+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9956.1.1 ID=mRNA_D-mesarthrocarpus_Contig9956.1.1|Name=mRNA_D-mesarthrocarpus_Contig9956.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=486bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9956:583..1068+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9956:583..1068+ >mRNA_D-mesarthrocarpus_Contig9956.1.1 ID=mRNA_D-mesarthrocarpus_Contig9956.1.1|Name=mRNA_D-mesarthrocarpus_Contig9956.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=480bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9956:583..1068+ (Discosporangium mesarthrocarpum MT17_79)back to top |