mRNA_D-mesarthrocarpus_Contig9953.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9953.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9953.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: A0A835ZC73_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC73_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.680e-22
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGTNWLEQ+LV+ME GEAD+REIPMLEEI+RQIEGHTICALGDAAAWPVQ
Sbjct:  397 REGTNWLEQLLVRMESGEADKREIPMLEEITRQIEGHTICALGDAAAWPVQ 447
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: A0A7R9ZM29_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM29_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.500e-22
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT+WLE +L++MEKG+AD+REIPMLEEISRQIEG TICALGDAAAWPVQ
Sbjct:   83 REGTSWLEDVLIRMEKGDADKREIPMLEEISRQIEGQTICALGDAAAWPVQ 133
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: A0A7S4LQB8_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S4LQB8_OXYMA)

HSP 1 Score: 95.9 bits (237), Expect = 2.930e-22
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT WLE IL++MEKG+AD+REIPMLEEISRQIEGHTICALGDAAAWPVQ
Sbjct:  247 REGTGWLEDILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQ 297
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: A0A7S0PT22_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PT22_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.120e-22
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT+WLE+IL++MEKG+AD+REIPMLEEISRQIEGHTICALGDAAAWPVQ
Sbjct:  392 REGTSWLEEILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQ 442
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: D7FZX3_ECTSI (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX3_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.470e-22
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT WLEQ+LVKMEKGEAD REIPMLEEISR IEGHTICALGDAAAWPVQ
Sbjct:  405 REGTGWLEQMLVKMEKGEADTREIPMLEEISRSIEGHTICALGDAAAWPVQ 455
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: A0A7S2YGI6_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGI6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.860e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT WLE ILV+MEKG+AD+REIPMLEEISRQIEGHTICALGDAAAWPVQ
Sbjct:  389 REGTGWLEDILVRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQ 439
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: A0A7S4JK52_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JK52_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.860e-22
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT+WLE IL++MEKG+AD+REIPMLEEISRQIEGHTICALGDAAAWPVQ
Sbjct:  392 REGTSWLEDILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQ 442
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: B8CBG7_THAPS (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=3 Tax=Ochrophyta TaxID=2696291 RepID=B8CBG7_THAPS)

HSP 1 Score: 96.3 bits (238), Expect = 5.930e-22
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT+WLE IL++MEKG+AD+REIPMLEEISRQIEGHTICALGDAAAWPVQ
Sbjct:  395 REGTSWLEDILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQ 445
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: K0SM96_THAOC (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SM96_THAOC)

HSP 1 Score: 96.3 bits (238), Expect = 5.970e-22
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT+WLE IL++MEKG+AD+REIPMLEEISRQIEGHTICALGDAAAWPVQ
Sbjct:  394 REGTSWLEDILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQ 444
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BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Match: A0A1Z5JAG7_FISSO (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAG7_FISSO)

HSP 1 Score: 95.9 bits (237), Expect = 8.000e-22
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPVQ 153
            REGT WLE IL++MEKG+AD+REIPMLEEISRQIEGHTICALGDAAAWPVQ
Sbjct:  390 REGTGWLEDILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQ 440
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9953.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZC73_9STRA1.680e-2290.20NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7R9ZM29_9STRA2.500e-2284.31Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4LQB8_OXYMA2.930e-2288.24Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID... [more]
A0A7S0PT22_9STRA3.120e-2288.24NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
D7FZX3_ECTSI4.470e-2292.16NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S2YGI6_9STRA5.860e-2290.20NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S4JK52_9STRA5.860e-2288.24NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
B8CBG7_THAPS5.930e-2288.24NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
K0SM96_THAOC5.970e-2288.24NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A1Z5JAG7_FISSO8.000e-2288.24NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9953contigD-mesarthrocarpus_Contig9953:3394..3561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FZX3
Preferred namenuoF
PFAMsComplex1_51K,NADH_4Fe-4S,SLBB
Model size168
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03942
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Exons1
Evalue7.33e-23
EggNOG OGsCOG1894@1|root,KOG2658@2759|Eukaryota
Ec32 ortholog descriptionNB-ARC and TPR repeat-containing protein
Ec32 orthologEc-22_003750.1
EC1.6.5.3,1.6.99.3
DescriptionFMN binding
Cds size168
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791145.2557447-CDS-D-mesarthrocarpus_Contig9953:3393..35611680791145.2557447-CDS-D-mesarthrocarpus_Contig9953:3393..3561Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9953 3394..3561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9953.2.1prot_D-mesarthrocarpus_Contig9953.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9953 3394..3561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9953.2.1

>prot_D-mesarthrocarpus_Contig9953.2.1 ID=prot_D-mesarthrocarpus_Contig9953.2.1|Name=mRNA_D-mesarthrocarpus_Contig9953.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=56bp
REGTNWLEQILVKMEKGEADQREIPMLEEISRQIEGHTICALGDAAAWPV
QVKEP*
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mRNA from alignment at D-mesarthrocarpus_Contig9953:3394..3561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9953.2.1 ID=mRNA_D-mesarthrocarpus_Contig9953.2.1|Name=mRNA_D-mesarthrocarpus_Contig9953.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=168bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9953:3394..3561+ (Discosporangium mesarthrocarpum MT17_79)
AGGGAGGGCACCAACTGGCTGGAGCAGATCCTGGTGAAGATGGAGAAGGG
GGAGGCCGACCAGCGTGAGATCCCTATGCTCGAGGAGATCTCCCGGCAGA
TAGAGGGCCACACCATCTGTGCCCTAGGAGATGCAGCAGCGTGGCCAGTC
CAGGTGAAGGAGCCCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9953:3394..3561+

>mRNA_D-mesarthrocarpus_Contig9953.2.1 ID=mRNA_D-mesarthrocarpus_Contig9953.2.1|Name=mRNA_D-mesarthrocarpus_Contig9953.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=168bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9953:3394..3561+ (Discosporangium mesarthrocarpum MT17_79)
AGGGAGGGCACCAACTGGCTGGAGCAGATCCTGGTGAAGATGGAGAAGGG
GGAGGCCGACCAGCGTGAGATCCCTATGCTCGAGGAGATCTCCCGGCAGA
TAGAGGGCCACACCATCTGTGCCCTAGGAGATGCAGCAGCGTGGCCAGTC
CAGGTGAAGGAGCCCTAG
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