mRNA_D-mesarthrocarpus_Contig995.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig995.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig995.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig995.5.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.450e-8
Identity = 41/94 (43.62%), Postives = 52/94 (55.32%), Query Frame = 3 
Query:  156 MKPPTLMDLEDLTRVLNSDNEGVLLKGLRKFASQVRHEHRHLLGQGTRGDGAMALTTVSGLGHDNSEEGEGRTTASTDPME-EEEGGEVADGDG 434
            MKPP  MDL+DL  VLNSD+E VLLKGLR+FA Q+R EH  +  +   G G     T      ++ E+GEG T    D  +    G +V D  G
Sbjct:    1 MKPPVEMDLDDLGVVLNSDSESVLLKGLRRFARQIRREHGLIPEKDEGGGGVDGTPTPP----NDEEQGEGATAMEVDSSDGSRSGSDVEDAKG 90
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig995.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8A9_ECTSI5.450e-843.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig995contigD-mesarthrocarpus_Contig995:12515..14109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8A9
Preferred nameURB1
PFAMsNopRA1,Npa1
Model size566
Max annot lvl2759|Eukaryota
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
Exons3
Evalue2.11e-09
EggNOG OGsKOG1791@1|root,KOG1791@2759|Eukaryota
EC2.5.1.54,3.6.1.52
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size411
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791144.940387-CDS-D-mesarthrocarpus_Contig995:12514..127471680791144.940387-CDS-D-mesarthrocarpus_Contig995:12514..12747Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig995 12515..12747 -
1680791144.959195-CDS-D-mesarthrocarpus_Contig995:13400..135391680791144.959195-CDS-D-mesarthrocarpus_Contig995:13400..13539Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig995 13401..13539 -
1680791144.971418-CDS-D-mesarthrocarpus_Contig995:13915..139541680791144.971418-CDS-D-mesarthrocarpus_Contig995:13915..13954Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig995 13916..13954 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791144.9811187-UTR-D-mesarthrocarpus_Contig995:13954..141091680791144.9811187-UTR-D-mesarthrocarpus_Contig995:13954..14109Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig995 13955..14109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig995.5.1prot_D-mesarthrocarpus_Contig995.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig995 12515..13954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig995.5.1

>prot_D-mesarthrocarpus_Contig995.5.1 ID=prot_D-mesarthrocarpus_Contig995.5.1|Name=mRNA_D-mesarthrocarpus_Contig995.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=137bp
MKPPTLMDLEDLTRVLNSDNEGVLLKGLRKFASQVRHEHRHLLGQGTRGD
GAMALTTVSGLGHDNSEEGEGRTTASTDPMEEEEGGEVADGDGKAEQQEE
EEEEEEEEDGSRPRRRALGSEGKNKEILKEEWRGVGE
back to top

mRNA from alignment at D-mesarthrocarpus_Contig995:12515..14109-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig995.5.1 ID=mRNA_D-mesarthrocarpus_Contig995.5.1|Name=mRNA_D-mesarthrocarpus_Contig995.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1595bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig995:12515..14109- (Discosporangium mesarthrocarpum MT17_79)
CCACCTTGCACCGCTGTCCACCGCAGCAAGAAAGGTCCCCATGCAAATGA
CCTGAGCAGCACATGCAGTTCAAATTTGGAATGCTTGATAGTACAGCTAC
TTGTTGTTGATTCAAGGGCTATCCGAGTGGATTTCAGACGCTGCTTCAAC
CTACCATGAAGCCTCCCACACTGATGGATCTAGAAGATCTCACGGTGAGC
GATGCCTCGACGACCAGTCCCGACAAACCCCAATCAGAGATGCGCAATTT
ACCGTCTATCTACCTTTCAAGCCCTTTGCGATGGATGTATTTCGAGTGAT
TGCCTGCCTGAGGGCGATTCGTTCATGTCATAGCCAGCCAGCCTACCCTC
CCACCTTTAGGATTCAAGATCCCTTTGTGCTTGTCTTGGTATTAATAGTC
TCATGTTCCTATTAGCGACTGTGTGGGCAATTTGCAGGCACTGTTCCGGC
AATATGCATGGATGGCTATACACTGGGTTCCCGTGTGCAGTTGCTGAGAA
CTACTTGTTGCGAACGTCCAAACGGCAGTGGTCCGCACCCTTCCCCCTCT
GCTGCCGTGAACGTTTTCAGCGTGTTCTGAACAGTGATAATGAGGGAGTC
CTTCTGAAAGGCCTAAGGAAATTCGCTTCTCAGGTACGACATGAACACCG
ACATCTCCTGGGGCAAGGTACACGGGGCGACGGGGCTATGGCTTTGACAA
CCGTGTCAGGTGTGTGCCGAGACATTCACAGAGGACCTGTTGTGGACGGT
TGAGGGTGGGTCTTCCCATGTACGCACGTCCCAATAACGCCAGTCTTTGC
TATGTGCGTGATCATCCCAAATGTAGCTGTATATGCAAACGCGGCTGTCG
GGCTGTTCTTCAGTACTTTGCCCGGGTCGGAAAATGTGTTGTGCCCAGCT
TTACGAAAGGTCTAGTCATGCACCGTTTGTCGGTGTGTTTGGCTAATCTT
CCCTTGACTCCCAAGGTGGGTGAGAGTGCCTTAAATATTCCTCTTTCACT
CAGTCCCACAGCCCTATGATATATGGAGGGCTGTACATGAAGGAGTTCTT
CGACCAACGGTCGGAGTGAGAAGGGCTCACAAAGATTGCCTTGAGAAGGT
AATCTTATTCAAGATTTTCTTGATCCCATTCCTCTCATGTTCAAATTGTC
GACAGATTGGACAGGCGCGCAGAATTAAATCTGGCCCGCCGTATGCCATC
ACGTAGCTCTAGGGCCCTAAAGGTGCCAGTTGCTCAAACTCTAACAATAA
CCAGACCCTACCCCCCAGAAGTGCTTGACAATCGACTGATTCAGCTCGCG
ATTTGCCAGCACATCGTGATACCTGAGCACGACCATCCCTCCACGGACCC
TTGACTCCCTAGGGTTAGGGCATGACAACAGCGAAGAGGGAGAGGGGCGG
ACCACAGCGTCTACTGACCCAATGGAGGAAGAGGAGGGTGGTGAGGTGGC
AGACGGAGATGGAAAAGCAGAGCAGCAGGAGGAGGAGGAAGAAGAGGAAG
AAGAGGAGGACGGCAGTAGGCCTCGGAGGAGAGCCCTTGGGAGCGAGGGA
AAAAATAAAGAAATCTTAAAGGAAGAATGGAGAGGGGTAGGGGAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig995:12515..14109-

>mRNA_D-mesarthrocarpus_Contig995.5.1 ID=mRNA_D-mesarthrocarpus_Contig995.5.1|Name=mRNA_D-mesarthrocarpus_Contig995.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=411bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig995:12515..14109- (Discosporangium mesarthrocarpum MT17_79)
ATGAAGCCTCCCACACTGATGGATCTAGAAGATCTCACGCGTGTTCTGAA
CAGTGATAATGAGGGAGTCCTTCTGAAAGGCCTAAGGAAATTCGCTTCTC
AGGTACGACATGAACACCGACATCTCCTGGGGCAAGGTACACGGGGCGAC
GGGGCTATGGCTTTGACAACCGTGTCAGGGTTAGGGCATGACAACAGCGA
AGAGGGAGAGGGGCGGACCACAGCGTCTACTGACCCAATGGAGGAAGAGG
AGGGTGGTGAGGTGGCAGACGGAGATGGAAAAGCAGAGCAGCAGGAGGAG
GAGGAAGAAGAGGAAGAAGAGGAGGACGGCAGTAGGCCTCGGAGGAGAGC
CCTTGGGAGCGAGGGAAAAAATAAAGAAATCTTAAAGGAAGAATGGAGAG
GGGTAGGGGAG
back to top