mRNA_D-mesarthrocarpus_Contig9947.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9947.1.1 vs. uniprot
Match: D8LES5_ECTSI (UVR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES5_ECTSI) HSP 1 Score: 240 bits (613), Expect = 5.930e-70 Identity = 116/233 (49.79%), Postives = 160/233 (68.67%), Query Frame = 1 Query: 67 LVTGARSTTKTKYRQLAEGPTLFYEYTKKSLHRPNMILHSGSRVYALDLKTGEETTISESSQPKFMVPATHVVGGKDAVLLIEGT-DEGGYHLVTALADGSKKKRLCPVNGYSTIQISPDQKRVALMQQDLPAQYFATKLLQGN-GALDPESMVPIEQLDVPLDRVIMGMFFSPDSKKLLFLVTKAKREELSVSRSSLKMGFHLEFQWIVYDCGKRTSTMYQSFIPRTFFVRV 759
LV A++ +TK R LA+G LFY YTKK +M++H+ +RVY LD+ TG+E IS + FM P+TH GG+DAV+L+E DE G HLV+ DGS KKR+CP G+ST +SPD +R+ LMQQD+ ++ +L+G GALDP S +EQ+++PLDRVIM FFSPDS KLL L TK + EL+V+RSS+++GF L+FQW++YDC R + F PR FF+++
Sbjct: 414 LVAAAKTPYRTKTRGLAQGNPLFYAYTKKDSRNADMVVHTANRVYHLDMTTGDEVDISTRAAQLFMAPSTHCEGGEDAVILVETDGDESGQHLVSGRVDGSAKKRICPTRGFSTFGVSPDGQRLCLMQQDMTTGFYTISVLEGGEGALDPLSTATMEQVEIPLDRVIMAFFFSPDSTKLLCLATKMSKSELAVARSSMRLGFQLKFQWVIYDCETRDVQLLDEFSPRPFFLKM 646
BLAST of mRNA_D-mesarthrocarpus_Contig9947.1.1 vs. uniprot
Match: A0A7S3XSM8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM8_HETAK) HSP 1 Score: 159 bits (401), Expect = 1.930e-41 Identity = 98/272 (36.03%), Postives = 153/272 (56.25%), Query Frame = 1 Query: 1 PDSRTMSYLSKGDGASETLTDVLVTGARSTTKTKYRQLAEGPTLFYEYTKKSLHRP-NMILHSGSR--VYALDLKTGEETTISESSQPKFMVPATHVVGGKDAVLLIEGTDEGGYHLVTALADGS---------------KKKRLCPVNGYSTIQISPDQKRVALMQQDLPAQYFATKLLQGNG-ALDPESMVPIEQLDVPLDRVIMGMFFSPDSKKLLFLVTKAKREELSVSRSSLKMGFHLEFQWIVYDCGKRTSTMYQSFIPRTFFVRV 759
PDS+T+++L++G + + V T R R + +G LF+ + P ++H+GS+ V +D +TG + +S FM PA H GG+++VL++EG HL + ADG KKRL V G+ST +SPD+++VALMQQDL ++ KL++ +G ALDP S P+ Q D+P+ +++ F+SPDS KLL L T R EL+++R++LK G++L+ +W V D T Y F PRTF+++V
Sbjct: 101 PDSKTLTFLAQGADGNVQMVSVDTT--REAAAGGARLVDKGTPLFFATAAAAEGEPLRYLVHNGSKRTVTRVDPRTGASELVCLTSGSMFMAPAAHRRGGRESVLVVEGG-----HLTSMTADGRGRGXXXXXXXXXXDPAKKRLVHVKGFSTFLLSPDEQKVALMQQDLITGAYSVKLVRADGDALDPTSDAPVSQEDLPIGNILLAYFWSPDSTKLLCLSTNFGRNELALARNALKQGYNLKCRWKVVDVDTGKVTNYPEFTPRTFYIKV 365
BLAST of mRNA_D-mesarthrocarpus_Contig9947.1.1 vs. uniprot
Match: A0A6H5KL47_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL47_9PHAE) HSP 1 Score: 154 bits (388), Expect = 9.280e-38 Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = 1 Query: 190 SRVYALDLKTGEETTISESSQPKFMVPATHVVGGKDAVLLIEGT-DEGGYHLVTALADGSKKKRLCPVNGYSTIQISPDQKRVALMQQDLPAQYFATKLLQGN-GALDPESMVPIEQLDVPLDRVIMGMFFSPDSKKLLFLVTK 615
S VY LD+ TG+E IS + FM P+TH GG+DAV+L+E DE G HLV+A DGS KKR+CP G+ST +SPD +R+ LMQQD+ ++ +L+G GALDP S +EQ+++PLDRVIM FFSPDS KLL L TK
Sbjct: 865 SWVYHLDMTTGDEVDISTRAAQLFMAPSTHCEGGEDAVILVETDGDESGQHLVSARVDGSAKKRICPTRGFSTFGVSPDGQRLCLMQQDMTTGFYTISVLEGGEGALDPLSTATMEQVEIPLDRVIMAFFFSPDSTKLLCLATK 1008
BLAST of mRNA_D-mesarthrocarpus_Contig9947.1.1 vs. uniprot
Match: W7TQD5_9STRA (Acylaminoacyl peptidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQD5_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.690e-23 Identity = 66/226 (29.20%), Postives = 115/226 (50.88%), Query Frame = 1 Query: 106 RQLAEGPTLFYEYTKKSLHRPNMILHSGSR--VY------ALDLKTGEETTISESSQPKFMVPATHVVGGKDAVLLIEGTDEGGYHLVTALADGSKKKRLCPVNGYSTIQISPDQKRVALMQQDLPAQYFATKLLQGNGALDPESMVPIEQLDVPLDRVIMGMFFSPDSKKLLFLVTKAKREELSVSRSSLKMGFHLEFQWIVYDCGKRTSTMYQSFIPRTFFVRV 759
R + EG LF+ +K + R ++++++G R +Y L K ++ E KF P G +D+V+ + +LV A DG +K +C V G+ T+ +SP+ K +ALM++D ++ ++ G A +P Q +P++ V+ +FSPDS+KLL +VT + E SV+R+++ +G L +W VY G Y F PR + ++
Sbjct: 408 RVIDEGMPLFFATSKYNSDRYSLVMNNGKRNGLYRYLGDMTLPRKAWKQLATHER---KFRSPEVASTGLQDSVIFVMDN-----YLVAASVDGRYRKNICRVQGFCTLAVSPNGKHIALMEEDGATGFYKMSIISGRDATNPYGGTAYVQKTLPINNVVASFYFSPDSQKLLLMVTTSPSHEFSVTRNTMNLGVSLTCKWDVYMLGSGEVRSYGMFNPRPYQLKA 625
BLAST of mRNA_D-mesarthrocarpus_Contig9947.1.1 vs. uniprot
Match: A0A0G4GZS2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GZS2_VITBC) HSP 1 Score: 73.9 bits (180), Expect = 9.750e-11 Identity = 54/189 (28.57%), Postives = 91/189 (48.15%), Query Frame = 1 Query: 106 RQLAEGPTLFYEYTKKSLHRPNMILHS--GSRVYALDLK----TGEETTISESSQP----KFMVPATHVVGGKDAVLLIEGTDEGGYHLVTALADGSKKKRLCPVNGYSTIQISPDQKRVALMQQDLPAQYFATKLLQG-NGALDPESM-VPIEQLDVPLDRVIMGMFFSPDSKKLLFLVTKAKREELS 636
R L +G LF+ +K P +I+++ R+ L + +GE S + P KF P H G D ++ +E L++ DG +KR+ P++ +Q+SPD +RVAL++Q + +++G + LDP + + D+P+ + +FSPDSKKLL T + LS
Sbjct: 352 RTLDKGRPLFFASSKLDRRHPKLIVNNWLAGRLRVLKDEGKWASGEGRWESLTDGPGKIAKFAAPKAHTAGNMDGIVAVEND-----WLISVSLDGKHRKRIMPISSSVAMQVSPDNQRVALLEQQTGS--CRVIVIEGEHDWLDPRNPDAKVSSFDLPIGHITAAFWFSPDSKKLLCFSTNLSKPALS 533 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9947.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9947.1.1 >prot_D-mesarthrocarpus_Contig9947.1.1 ID=prot_D-mesarthrocarpus_Contig9947.1.1|Name=mRNA_D-mesarthrocarpus_Contig9947.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=263bp MSYLSKGDGASETLTDVLVTGARSTTKTKYRQLAEGPTLFYEYTKKSLHRback to top mRNA from alignment at D-mesarthrocarpus_Contig9947:2..4458+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9947.1.1 ID=mRNA_D-mesarthrocarpus_Contig9947.1.1|Name=mRNA_D-mesarthrocarpus_Contig9947.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4457bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9947:2..4458+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9947:2..4458+ >mRNA_D-mesarthrocarpus_Contig9947.1.1 ID=mRNA_D-mesarthrocarpus_Contig9947.1.1|Name=mRNA_D-mesarthrocarpus_Contig9947.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=789bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9947:2..4458+ (Discosporangium mesarthrocarpum MT17_79)back to top |