mRNA_D-mesarthrocarpus_Contig9945.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9945.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9945.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 6.770e-32
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 1
Query:   28 QEYVSEFLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVELAVSV 243
            +E+V EFLD+RTQKWA+FAAVWNEVIN MR SDVISNAEQ ILKFHSF+GFAKPVYLPIFQTAGSVELA+S+
Sbjct:  878 REFVREFLDLRTQKWATFAAVWNEVINNMRYSDVISNAEQGILKFHSFAGFAKPVYLPIFQTAGSVELALSM 949          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.340e-29
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 1
Query:   46 FLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVELAVSVLA 249
            FLDVRTQKWA+FAAVWNEVIN+MR SDVISNAEQ +LKFH F+GF+KPVYLPIFQTAGSVELAV+++A
Sbjct: 1060 FLDVRTQKWAAFAAVWNEVINQMRLSDVISNAEQDMLKFHKFTGFSKPVYLPIFQTAGSVELAVNIMA 1127          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.930e-27
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1
Query:   28 QEYVSEFLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVELAVSVLA 249
            ++  + FL+VRTQKWA+FAAVWNEVINKMR+SDVISN E+ +LKFH F GF KPVYLPIFQTAGSVE AV  +A
Sbjct:  683 RQIAARFLEVRTQKWAAFAAVWNEVINKMRESDVISNEERDMLKFHKFVGFMKPVYLPIFQTAGSVERAVHTMA 756          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 100 bits (250), Expect = 7.510e-23
Identity = 42/70 (60.00%), Postives = 59/70 (84.29%), Query Frame = 1
Query:   37 VSEFLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVELAVSVL 246
            V+E+LDV TQKW  F   WNE+IN++R++DVIS+ E+++LKFHSF GF+KPVYLP+FQTAG VE  ++++
Sbjct:  387 VAEYLDVHTQKWGIFGTAWNEIINQLRETDVISDQERNLLKFHSFEGFSKPVYLPVFQTAGMVEKGLAIV 456          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A7S1UGV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGV2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.330e-19
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   25 LQEYVSEFLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVELAVSVL 246
            ++  +SEFLD RTQ+W  FA+ WN++I  MR  D+ISN E+ ++ F  F  F+KPVYLP+F TAG++E AV VL
Sbjct:   76 VKHSLSEFLDARTQRWVVFASAWNDIIEHMRHGDLISNNERDLMTFDHFKSFSKPVYLPVFVTAGALERAVDVL 149          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A7S1ZM50_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZM50_TRICV)

HSP 1 Score: 90.1 bits (222), Expect = 4.380e-19
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   25 LQEYVSEFLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVELAVSVL 246
            LQ YV+  LDVR QKW  F+A WNE+I+  R  D++SN E+  LKF  F GF++ +YLP+FQTAG +E A++ L
Sbjct:  419 LQSYVNRLLDVRIQKWVMFSAAWNEIIDHFRQEDILSNRERDYLKFSRFEGFSQAIYLPVFQTAGVIEEALTEL 492          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A7S2JUC2_9STRA (Hypothetical protein n=3 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUC2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.230e-19
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 MDGGGAPFLQEYVSEFLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVE 228
            +D   +  LQ YV+  LDVR QKW  F+A WNEVI++MR  D+ISN E+  L F  F GF++ +YLP+FQTAG ++
Sbjct:  245 LDSAESQRLQSYVNNLLDVRIQKWVMFSAAWNEVIDQMRQEDIISNRERDYLLFSRFDGFSQAIYLPVFQTAGVID 320          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.060e-15
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   28 QEYVS---EFLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVELAVS 240
            QE+ S     LDVR QKW  FA  WNE+I+  R+ D+ISN E   LKF  F  F  P+YLP+FQTAG V++ ++
Sbjct:  836 QEFKSATTRLLDVRIQKWVFFAEAWNEIIDNFREEDIISNREMGYLKFSRFDNFNMPIYLPVFQTAGVVDVCLA 909          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A482SV99_9ARCH (FKS1_dom1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV99_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 1.180e-13
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   25 LQEYVSEFL-DVRTQKWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVE 228
            L   VSE L + R+++W  F  +WNE+++K+RD+D I+N E+ +L F SF   +KP+YLP+FQTAG VE
Sbjct:  722 LSRVVSENLANDRSRRWIIFGRIWNEIVSKLRDTDHINNKERDLLLFTSFDWLSKPIYLPLFQTAGCVE 790          
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Match: A0A8J2T241_9STRA (1,3-beta-glucan synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T241_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.120e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   67 KWASFAAVWNEVINKMRDSDVISNAEQSILKFHSFSGFAKPVYLPIFQTAGSVELAVSVLACASLSQKP 273
            +W  FA  WN+VI+ MR+SDVI++ E+ +L F  F GF+KPVYLPIF TAG++E A +    A+ + +P
Sbjct:  954 QWVLFAEAWNDVISAMRNSDVINDYEREVLAFDRFPGFSKPVYLPIFVTAGALERASAAANDAAAAYRP 1022          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9945.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JFR3_9PHAE6.770e-3284.721,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z1S2_9STRA1.340e-2983.821,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A835Z4B5_9STRA1.930e-2772.971,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2UV62_9STRA7.510e-2360.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1UGV2_9STRA4.330e-1952.70Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1ZM50_TRICV4.380e-1952.70Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2JUC2_9STRA6.230e-1951.32Hypothetical protein n=3 Tax=Leptocylindrus danicu... [more]
A0A7S2QVX6_9STRA2.060e-1550.001,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
A0A482SV99_9ARCH1.180e-1349.28FKS1_dom1 domain-containing protein n=1 Tax=archae... [more]
A0A8J2T241_9STRA4.120e-1349.281,3-beta-glucan synthase n=1 Tax=Pelagomonas calce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9945contigD-mesarthrocarpus_Contig9945:741..1563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0RK06
PFAMsGlucan_synthase
Model size273
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.58e-15
EggNOG OGsKOG0916@1|root,KOG0916@2759|Eukaryota,2XBBK@2836|Bacillariophyta
Description1,3-beta-glucan synthase component
Cds size273
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791144.4267359-CDS-D-mesarthrocarpus_Contig9945:740..8391680791144.4267359-CDS-D-mesarthrocarpus_Contig9945:740..839Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9945 741..839 +
1680791144.4416137-CDS-D-mesarthrocarpus_Contig9945:1389..15631680791144.4416137-CDS-D-mesarthrocarpus_Contig9945:1389..1563Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9945 1390..1563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9945.1.1prot_D-mesarthrocarpus_Contig9945.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9945 741..1563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9945.1.1

>prot_D-mesarthrocarpus_Contig9945.1.1 ID=prot_D-mesarthrocarpus_Contig9945.1.1|Name=mRNA_D-mesarthrocarpus_Contig9945.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=91bp
MDGGGAPFLQEYVSEFLDVRTQKWASFAAVWNEVINKMRDSDVISNAEQS
ILKFHSFSGFAKPVYLPIFQTAGSVELAVSVLACASLSQKP
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mRNA from alignment at D-mesarthrocarpus_Contig9945:741..1563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9945.1.1 ID=mRNA_D-mesarthrocarpus_Contig9945.1.1|Name=mRNA_D-mesarthrocarpus_Contig9945.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=823bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9945:741..1563+ (Discosporangium mesarthrocarpum MT17_79)
ATGGACGGGGGAGGTGCCCCCTTCCTCCAGGAGTATGTGAGCGAGTTCTT GGACGTCAGGACTCAGAAGTGGGCCAGCTTTGCCGCTGTCTGGAACGAGG TAAGTATTTTGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGATT TAATGTTGTATCCTTTTTTTGTAGAAAATGTCGTTTTCAGATGGGGGATG TGTTTGAGACTGGCATCTAACCCTAACCCTAACTAACCCTGTCCTCACCA ACAAAGTACCTCCAGGAGACATCTCTGATTTAATCAATTTCAGAAGTCCG TCCCACCTCCTCATGGAACGGGAGAATATATTCTGAGAGTATGTATATAT TTTCTCTTGGCAGTCAAACACTTTGTAGGTCATTTAATTTTCTTTTTTTA TTATAGGTTACTGGGGTTCAAGTGCATGGCCAACCCTGGCCCTATACGCC CTGACCCTATACTCCCTGGCCCTAACCCTATACCTCACATTCGAGTCCCT TTCGCTAGTCAGTAAAGGTCTGTCCCTGTTGATTTTTGAACTTCCCCCCC CCAGCCCCTTCTTTATCCCATACACAGAGCTGGTTTTCAGTTGTTTGTGT CGTGATCCACTGCTGTACTCCTTGACTCCTCACTATTTCCTCAACCCAGG TGATCAACAAAATGAGGGACAGCGACGTCATCAGCAACGCGGAGCAGTCG ATTCTCAAGTTCCACTCCTTCAGCGGATTTGCCAAGCCCGTGTACCTGCC CATTTTCCAGACAGCTGGCAGCGTGGAGCTAGCGGTGAGCGTTTTGGCAT GCGCTTCATTATCTCAGAAGCCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9945:741..1563+

>mRNA_D-mesarthrocarpus_Contig9945.1.1 ID=mRNA_D-mesarthrocarpus_Contig9945.1.1|Name=mRNA_D-mesarthrocarpus_Contig9945.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=273bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9945:741..1563+ (Discosporangium mesarthrocarpum MT17_79)
ATGGACGGGGGAGGTGCCCCCTTCCTCCAGGAGTATGTGAGCGAGTTCTT
GGACGTCAGGACTCAGAAGTGGGCCAGCTTTGCCGCTGTCTGGAACGAGG
TGATCAACAAAATGAGGGACAGCGACGTCATCAGCAACGCGGAGCAGTCG
ATTCTCAAGTTCCACTCCTTCAGCGGATTTGCCAAGCCCGTGTACCTGCC
CATTTTCCAGACAGCTGGCAGCGTGGAGCTAGCGGTGAGCGTTTTGGCAT
GCGCTTCATTATCTCAGAAGCCA
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