Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9940.1.1 vs. uniprot
Match:
A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE)
HSP 1 Score: 93.2 bits (230), Expect = 2.610e-18
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 19 DLEETSTMSHISYASHVSHHSVESARSNSWSGSVMGGLGLVDYPAGIPAKQWGRLQDRTVRWLMR 213
DLEE+S MSH++ VESARS SWSGS++GG G VDYPAGIP KQWGR+QDRTVRWL+R
Sbjct: 254 DLEESSAMSHVT---------VESARSGSWSGSIVGGFGFVDYPAGIPPKQWGRIQDRTVRWLIR 309
BLAST of mRNA_D-mesarthrocarpus_Contig9940.1.1 vs. uniprot
Match:
D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI)
HSP 1 Score: 93.2 bits (230), Expect = 2.620e-18
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 19 DLEETSTMSHISYASHVSHHSVESARSNSWSGSVMGGLGLVDYPAGIPAKQWGRLQDRTVRWLMR 213
DLEE+S MSH++ VESARS SWSGS++GG G VDYPAGIP KQWGR+QDRTVRWL+R
Sbjct: 277 DLEESSAMSHVT---------VESARSGSWSGSIVGGFGFVDYPAGIPPKQWGRIQDRTVRWLIR 332
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.61e-18 / Id = 67.69 Expect = 2.62e-18 / Id = 67.69 Sequence A0A6H5KV84_9PHAE D7FJN4_ECTSI
Match Name E-value Identity Description
A0A6H5KV84_9PHAE 2.610e-18 67.69 VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more] D7FJN4_ECTSI 2.620e-18 67.69 VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Seed ortholog 2880.D7FJN4 Preferred name MIB1 PFAMs Ank,Ank_2,Ank_4,Ank_5,MIB_HERC2,VPS9,ZZ,zf-C3HC4_3 Model size 639 Max annot lvl 2759|Eukaryota KEGG ko ko:K10645 Hectar predicted targeting category other localisation Exons 3 Evalue 4.29e-19 EggNOG OGs COG0666@1|root,KOG2319@2759|Eukaryota,KOG4177@2759|Eukaryota EC 2.3.2.27 Description spectrin binding Cds size 639 COG category I BRITE ko00000,ko01000,ko04121
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680791144.0030448-CDS-D-mesarthrocarpus_Contig9940:1891..2065 1680791144.0030448-CDS-D-mesarthrocarpus_Contig9940:1891..2065 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig9940 1892..2065 + 1680791144.026574-CDS-D-mesarthrocarpus_Contig9940:2787..3190 1680791144.026574-CDS-D-mesarthrocarpus_Contig9940:2787..3190 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig9940 2788..3190 + 1680791144.0381382-CDS-D-mesarthrocarpus_Contig9940:4482..4544 1680791144.0381382-CDS-D-mesarthrocarpus_Contig9940:4482..4544 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig9940 4483..4544 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9940.1.1
>prot_D-mesarthrocarpus_Contig9940.1.1 ID=prot_D-mesarthrocarpus_Contig9940.1.1|Name=mRNA_D-mesarthrocarpus_Contig9940.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=213bp
AGTGGIDLEETSTMSHISYASHVSHHSVESARSNSWSGSVMGGLGLVDYP back to top mRNA from alignment at D-mesarthrocarpus_Contig9940:1892..4544+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9940.1.1 ID=mRNA_D-mesarthrocarpus_Contig9940.1.1|Name=mRNA_D-mesarthrocarpus_Contig9940.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2653bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9940:1892..4544+ (Discosporangium mesarthrocarpum MT17_79)GCTGGCACCGGCGGGATCGACCTGGAGGAGACAAGCACCATGTCCCATAT
CTCGTACGCTTCCCACGTCTCCCACCACTCCGTCGAGTCCGCCAGATCCA
ACTCCTGGTCCGGTTCTGTGATGGGAGGGCTGGGTTTAGTGGACTACCCG
GCAGGGATCCCTGCTAAACAATGG GTAAAGGACAAGAGACCCTTCTCTCT
TTACTTCCCTACTGCAGAGTCAGGCGCAGTCGAAAATGCGGGTTCAAGAG
GGCACTGGCCTTGTTTTTTTGTTTGTACCGTAGGATGCACTACCTGTTTT
TTCTTTTTTCTTTTCGCACGGAAGAGGAAAGGTGGCACCTCTTCACCGGC
AAAAAAAGAAGGAGAGGGGAGGGGAGGGGAGGGGGATCACAAGACCACCG
GTGTGGCCTGCATTAGATTATTCGCATCTTTATGGCACGTTTTGGTTCTC
TTTCTTTTTTGTACTGACACGGCATACTTGGGCAGCGCTTCAGAAGGGGG
GGATTTGCACTATCGAGGCCTACCGTCTATCTATCAAAGGCTCTCCAAGG
GGGAAAGGGGTGGGTGGGGGAGAGGGGGGTGGTGGGGGTTTAGCATGTCA
GCGCAGAGGGCGTATTTCGAAGGATGAAGCTCCGTTTTTTTTTTTTTTAC
AGTTGAAATCTCCGTGTTGGTTTTTCTTTTCTCTTTCAAGGCTGTCAAAG
CACGACCGGAGTGGTAGAGCTCATCCTAGAGAAAATACCCCTGACCCTCC
AACCTGTGGCAGTTAAAAACCCCTGACCTCGGACCCCTGCCACCCCAGCC
CATTAGCCTTCATGAAGCACCTCAGTAACCATACCCTAGGGAAACCCTAG
CCTTTGCCCAAACCCTAACAACCCTCACCCTAACCCTAACCTCCAGGGTC
GACTCCAAGACCGAACAGTCCGGTGGCTGATGCGCGGCGATACCATCCAA
AGAAACCAGGGCCCCAGGAAGGGGGGCTCCCTGGGAGCTGGGGCCTTCCA
GGGTGGCCCTGGTGGCGGCCCTGAGGGCAGTGGAGGCCCAAGTAGCAGTG
GGGGCCCTGGTAGTGTTGGTGGCAGCAGCCGGGGGCCCTTGAAGCCACCA
GCGCTGTCCTCATTGGCTCTGGTGACAGGTCCCTCTGACGCCCAGAGCGC
CACCAGCGCGGGAAGCGGGAGCACAGCCAACGGGGGACGGCCCTTCTCCT
CTGCGAGCTCGCCCCCGCCCACCCTGGTCTCACCTCTGTACAGCCCCACC
ACCTCAGGGAAAGGGGCTGCCACTGCTGGGGGGGGGGGTCGGGAGGACG G
TGAGCATGAGATGTCAGGGCAGAAACATATGTATGTAGTTCTTGAAACCC
CTTTCCCGCTTAAGCCTTCGAAATGAAAGGCTTGTTCCACGTGGAGCACA
CGATGGTTGTGCTGCTGGACAACATCCCCTCCGGCGTACATGGAGGTTTT
TTTCATGTACACTGGGGAGGAAGTACACTGTCTGCAGGGTAGCTATTGTG
CGCTCCAGGTGGGATGTAGTTGCCATGGCTCGTGGAGAAGGTGACTAGAC
CTTGGAGAGGCGATTTGGGGATTGCCTAGTCCTTTCCTGTTGACCTGACT
GATGAAGGAGTAGGCTGTGCTAAAGAACTTGGTCGCAAGACAAAGGTACA
GGGCGCCTGATCTGTGACCCTCTTCTGGTTAAGTCATGGCTTTCCGCCAC
TTGGGGTAATACATCAGAGATCGCAAGCTTGCTGTACATTCTTGGTGACT
TGCTTTTTTGGTGCCCAAGAGTGTCGATCATAGGCACCCTCTGTAGAAGC
ATCAGTTCCAATGTTGGAAAATGCATTTACCTGACATGCAAGAATGCTTC
CTGGTCGCTCGTGAGGGGGGTTAGGGTTAGGGTTAGACCCAGTTCGAACA
AAGCTCATATTTGTTCAAACAGGGCTAACCAACTAATACCGTTTCTTCTT
ATTCTCTTTTTTTTCTTTCTTACGAATCACGTCTGGCACCGTGTCCTAAA
AAAAAAAATTGTGGCACCAAGAGCGATACAAAAAAAAAAGCAGAAACCAG
AACAGATTGATTTTCGCGCTTGATTTTCCGGGTAAATAACTGAGCAATCC
ACGCCCTTGTGTTTTTCGACCCTGTCTTTGTTTTTCATTGAGTGTGGCCT
TTAGAACTTGCTAGAGGGCGAGGTCTTTAGAACGCGGTGTGCGATGGAAT
GGAATGCATGCGCTTGCTTTATGTTTGCTCCTCTTCTGCTCTCGTTTCTT
TTTTTTTGCGCTTGCTCATGTCGAGTGAACACGCCTGACCCCACCCATAC
GTGGCAAGGAAACCCTATGCTGTGTTCGTTGCCTTAGCCTCGTTGCCTTA
GCCTCATCTGCCTTGCCTCACCCTTGCCGGTAAATAGCTATCCCTTTTTC
ATACCAGGGCATGAAGCATTTTGTTCCTCTTCATCGGTGGTTGCACTGGA
GGGGGAGCAAGGAAAAAGTGCTCAGCCTCTCCCCTCCTTGTTGACTGTGG
TGTTCTTTCATCCCCCACCCCCACAAACCCTAACTCTAACCCTAACCCTA
CCCCCCTCCCTTTGTTTTTTTTTGTGGCTCCTACAATATAGATGGTGTGC
ATGCCAAATGGCTGGCCCAGCTGGAGGTGGTATCCTCGAAGAACATTGAG
GAT back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9940:1892..4544+
>mRNA_D-mesarthrocarpus_Contig9940.1.1 ID=mRNA_D-mesarthrocarpus_Contig9940.1.1|Name=mRNA_D-mesarthrocarpus_Contig9940.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=639bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9940:1892..4544+ (Discosporangium mesarthrocarpum MT17_79) back to top