mRNA_D-mesarthrocarpus_Contig994.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE) HSP 1 Score: 197 bits (502), Expect = 7.360e-59 Identity = 94/144 (65.28%), Postives = 121/144 (84.03%), Query Frame = 3
Query: 312 VYQGLKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVKKKKDLFSLDDVHVRLKEV 743
V QGL FQG+RGGK DP MLD+V+V+ YG+M+NL+ VAQ SMKGPQL++L++YDPGMT+ + AVR+C MGLNP +GQ QV VPIPK +KESR+A+ K+AAKHAEK+KVV+RGIRHK+ D++KKKKD F DDVH+R+KE+
Sbjct: 131 VLQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQVHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEI 274
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA) HSP 1 Score: 145 bits (365), Expect = 5.020e-38 Identity = 81/154 (52.60%), Postives = 98/154 (63.64%), Query Frame = 3
Query: 312 VYQGLKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQN----------QVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVKKKKDLFSLDDVHVRLKEV 743
V +GLK + +RGG+ DPAM DH+ V YG LS VAQVS KGPQL++LT YDP V AVRD M LNP +DG V VPIPK S E+R++LVK+A K EK KV +RGIRHKV +++KK K FS DDVH R KE+
Sbjct: 157 VLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEI 310
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK) HSP 1 Score: 117 bits (292), Expect = 7.320e-28 Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 3
Query: 318 QGLKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVKK 692
Q L + + +R G+ADPAM DH+QVD YG + LS VA V+ +GPQL+++ +YDP + V A+R+C MGLNP +SVP+PKTSKE R+ L ++A + EKTK +R R D+ KK
Sbjct: 109 QALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQALEGGALSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKK 233
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: UPI001BA79AAC (ribosome recycling factor n=1 Tax=Roseomonas terrae TaxID=424799 RepID=UPI001BA79AAC) HSP 1 Score: 112 bits (280), Expect = 5.160e-27 Identity = 53/114 (46.49%), Postives = 86/114 (75.44%), Query Frame = 3
Query: 324 LKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIR 665
LK EFQG+R G+A PA+L+ V+V+ YG+++ L++VA VS+ GP L+ + ++D G+T+ V +A+R+ ++GLNP +GQ + VP+P + E R+ LVK AA++AE T+V +RG+R
Sbjct: 23 LKKEFQGLRTGRASPALLEPVRVEAYGSVTPLNQVANVSIAGPGLLSVQVWDKGLTKAVESAIREANLGLNPQAEGQ-VIRVPLPPLTAERRNELVKAAARYAESTRVAIRGVR 135
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: A0A7S1U0D6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0D6_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.130e-25 Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 3
Query: 324 LKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVKKKKDLFSL--DDVH 725
LK F GIRGG+ +P M DHV VD YG+ + ++ VAQV++K P+ +T++DP + + VA A+ M LNP V+G N ++VPIPK ++E R+ + K A K E K LR +R D+VK ++L L DD H
Sbjct: 51 LKENFAGIRGGRPEPGMFDHVMVDAYGSPTPMNAVAQVALKTPKAATVTVFDPSVAQNVAEALEGAGMDLNPQVEG-NTITVPIPKLTRELREDMAKAAGKQLETAKQALRRLRKSALDEVKDNEELGELSEDDAH 185
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: A0A840XNP9_9PROT (Ribosome-recycling factor n=12 Tax=Roseomonas TaxID=125216 RepID=A0A840XNP9_9PROT) HSP 1 Score: 107 bits (268), Expect = 3.060e-25 Identity = 51/122 (41.80%), Postives = 88/122 (72.13%), Query Frame = 3
Query: 324 LKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVK 689
LK EF G+R G+A PA+L+ ++V+ YG+M+ L++VA +S+ GP L+ + ++D +T+ V +A+R+ ++GLNP +GQ + VP+P + E R+ L K AA++AE+T+V +RG+R ++VK
Sbjct: 23 LKKEFAGLRTGRASPALLEPIRVEAYGSMTPLNQVANISVAGPGLLSVQVWDKALTKHVESAIREANLGLNPQAEGQ-VIRVPLPPLTTERRNELAKAAARYAEQTRVAIRGVRRDGMEQVK 143
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: A0A437MJH9_9PROT (Ribosome-recycling factor n=2 Tax=Rhodovarius TaxID=268408 RepID=A0A437MJH9_9PROT) HSP 1 Score: 107 bits (266), Expect = 6.360e-25 Identity = 60/143 (41.96%), Postives = 91/143 (63.64%), Query Frame = 3
Query: 324 LKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVK--KKKDLFSLDDVHVRLKEVR 746
LK EFQG+R G+A PA+L+ ++V++YG +S L++VA VS+ GP L+ + +YD G + V A+RD + LNP +GQ + VP+P + E R+ L K AAK+AE K+ +R +R ++ + KKK S DD KEV+
Sbjct: 25 LKKEFQGLRTGRASPALLEPIRVEIYGAVSPLNQVANVSVGGPGLLNVQVYDRGQVKAVEIAIRDSGLNLNPQTEGQT-IRVPLPPLTTERRNELSKQAAKYAEGAKIAVRNVRRDGMEQAQGWKKKSEISEDDAKRLEKEVQ 166
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: A0A3B9K4C6_9PROT (Ribosome-recycling factor n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A3B9K4C6_9PROT) HSP 1 Score: 105 bits (263), Expect = 1.550e-24 Identity = 55/138 (39.86%), Postives = 87/138 (63.04%), Query Frame = 3
Query: 318 QGLKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVKKKKDLFSLDDVHVR 731
+ +KN+F G+R G+A MLD +QVD YG+ L++ A V+ P+L+ + ++D M + V A++R+ D+GLNP DGQ + +PIP S+E R + K+A K AE K+V+R IR DK+KKK+ + + +R
Sbjct: 18 ESMKNDFSGLRAGRASVNMLDSIQVDAYGSKIPLNQAATVNAPEPKLITIQVWDKSMVDSVEASIRESDLGLNPMKDGQ-LIRLPIPDLSEERRLEITKVAKKFAENAKIVVRNIRRDSLDKIKKKQSDSEISEDELR 154
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: UPI001C2C08B0 (ribosome recycling factor n=1 Tax=Siccirubricoccus sp. G192 TaxID=2849651 RepID=UPI001C2C08B0) HSP 1 Score: 105 bits (261), Expect = 3.300e-24 Identity = 56/144 (38.89%), Postives = 93/144 (64.58%), Query Frame = 3
Query: 324 LKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVK--KKKDLFSLDDVHVRLKEVRQ 749
L+ EF G+R G+A PA+L+ ++V+ YGT L++VA VS+ GP L+ + ++D + + V A+RD +GLNP +GQ + VP+P ++E R+ LVK A K++E T+V +RG+R +++K +KK DD +EV++
Sbjct: 23 LRKEFSGLRTGRASPALLEPIRVEAYGTEQPLNQVANVSIAGPGLLSVQVWDKSVIKAVEVAIRDSGLGLNPQTEGQ-VIRVPLPPLTQERRNDLVKAAGKYSEGTRVAVRGVRRDGMEQIKTWEKKHEIGEDDAKTWAEEVQK 165
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Match: UPI001E4BBADF (ribosome recycling factor n=1 Tax=Roseomonas sp. OT10 TaxID=2897332 RepID=UPI001E4BBADF) HSP 1 Score: 105 bits (261), Expect = 3.470e-24 Identity = 51/122 (41.80%), Postives = 83/122 (68.03%), Query Frame = 3
Query: 324 LKNEFQGIRGGKADPAMLDHVQVDMYGTMSNLSEVAQVSMKGPQLMMLTMYDPGMTEVVAAAVRDCDMGLNPSVDGQNQVSVPIPKTSKESRDALVKIAAKHAEKTKVVLRGIRHKVSDKVK 689
L+ EF G+R G+A PA+L+ ++V+ YG+ LS+VA +S+ GP L+ + ++D +T+ V A+RD ++GLNP +GQ + VP+P ++E R+ L K AAK+AE KV +RG+R + +K
Sbjct: 25 LRKEFSGLRTGRASPALLEPIRVEAYGSNQPLSQVANISVAGPGLLSVQVWDKSVTKAVEVAIRDANLGLNPQAEGQ-VIRVPLPPLTQERRNDLAKQAAKYAEAAKVAIRGVRRDGMETIK 145 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig994.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig994.2.1 >prot_D-mesarthrocarpus_Contig994.2.1 ID=prot_D-mesarthrocarpus_Contig994.2.1|Name=mRNA_D-mesarthrocarpus_Contig994.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=192bp MNMAAVVAYGSYFISAVPAFFPALALARIYLLAHNRPRLVYQGLKNEFQGback to top mRNA from alignment at D-mesarthrocarpus_Contig994:23020..24958+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig994.2.1 ID=mRNA_D-mesarthrocarpus_Contig994.2.1|Name=mRNA_D-mesarthrocarpus_Contig994.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1939bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig994:23020..24958+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig994:23020..24958+ >mRNA_D-mesarthrocarpus_Contig994.2.1 ID=mRNA_D-mesarthrocarpus_Contig994.2.1|Name=mRNA_D-mesarthrocarpus_Contig994.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=576bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig994:23020..24958+ (Discosporangium mesarthrocarpum MT17_79)back to top |