mRNA_D-mesarthrocarpus_Contig9937.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9937.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig9937.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9937.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9937contigD-mesarthrocarpus_Contig9937:2029..3498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size803
Hectar predicted targeting categorysignal peptide
Exons3
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791143.619314-UTR-D-mesarthrocarpus_Contig9937:2028..22471680791143.619314-UTR-D-mesarthrocarpus_Contig9937:2028..2247Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9937 2029..2247 -
1680791143.6694496-UTR-D-mesarthrocarpus_Contig9937:3361..34981680791143.6694496-UTR-D-mesarthrocarpus_Contig9937:3361..3498Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9937 3362..3498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791143.633747-CDS-D-mesarthrocarpus_Contig9937:2247..23921680791143.633747-CDS-D-mesarthrocarpus_Contig9937:2247..2392Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9937 2248..2392 -
1680791143.6450958-CDS-D-mesarthrocarpus_Contig9937:2742..29691680791143.6450958-CDS-D-mesarthrocarpus_Contig9937:2742..2969Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9937 2743..2969 -
1680791143.6552377-CDS-D-mesarthrocarpus_Contig9937:3286..33611680791143.6552377-CDS-D-mesarthrocarpus_Contig9937:3286..3361Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9937 3287..3361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9937.4.1prot_D-mesarthrocarpus_Contig9937.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9937 2248..3361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9937.4.1

>prot_D-mesarthrocarpus_Contig9937.4.1 ID=prot_D-mesarthrocarpus_Contig9937.4.1|Name=mRNA_D-mesarthrocarpus_Contig9937.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=149bp
MSPLTLIILGLAVTNAVAWVPGGIQAHPHQYSGKLSMARSVVGKFCSSHA
IPDAALVTAKSSFAGFSLALPSDKKFIEGTDGGAGDRRSKGSMWAAVRFP
RFRLRKRDSVRTDEREPGPPVYRSVERIEKYPRYPMWPVQNGVDWELQ*
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mRNA from alignment at D-mesarthrocarpus_Contig9937:2029..3498-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9937.4.1 ID=mRNA_D-mesarthrocarpus_Contig9937.4.1|Name=mRNA_D-mesarthrocarpus_Contig9937.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1470bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9937:2029..3498- (Discosporangium mesarthrocarpum MT17_79)
TTTTTTCCCTAGAGAGAGGTATTCCTGAGAGAAATACGGAGTTGACTTGC
CTCCATAGATTGGGTCTTGCTCAGTTGTGCACAGACGAGGTCATCAAGGA
CCTCCCCCACTGTGTGCCTCACGCAGAGTGAAGTACAATGTCTCCGTTGA
CACTGATCATTCTGGGACTGGCGGTGACGAATGCCGTCGCCTGGGTCCCC
GGTGGGATACAGGTGAATCATGAAACTTGTTCAACGTAGGTACTCGAGGC
CCAAATCTTGAGTGTGTCACAACCTGAAGGAGAGCAACGGCGCATGACAC
ACTCTCGTCGCTTGAGGTATCCATTGACAGCATTTTCGATTTCTCGTAAG
AACACGCGGAACTTTCGGGAGCTTCCTACTACTCTTGCCTGTTGATTCCC
AATCGCGCTGGGAGAGGCCCCCCTAGAGGATCGTATCCATCATGTTCAAT
CCTCCTCGGCGGTGTCCACACACCTGCATCCTCAACTTTCTCTTCTCCGC
TCTGCTCTTCCCCTTGTTGGCTGGCCCAGGCACACCCTCACCAGTACTCT
GGAAAGCTATCAATGGCCAGGTCCGTTGTGGGCAAGTTCTGCAGCTCACA
CGCCATTCCCGACGCAGCACTGGTGACAGCGAAGAGTAGCTTCGCGGGAT
TCTCCTTGGCATTACCAAGCGATAAAAAGTTCATTGAAGGGACCGACGGG
GGGGCAGGGGATAGGCGGAGCAAGGGAAGTATGTGGGCAGCCGTCCGATT
CCCAAGGTGGGAATCGACAACTTTAGCTGATGTTTCTGTTCGCGGGGCAA
AGTTTCACGGCTGTCTCATCGCCCCTGTTGGTTTCTTCAGTCAGGTCTTC
TTTCCTATCTTCTTTCCACTCTGGCCTCAGGAATTGCAGCGAAAACTTGA
TCCCCCTGTCCAACAAAACCCCGGCCCCAAAGACCTAAGGTACGATTTTT
CTGCTCTTGGGGTGTTGACGGGCACTGCTAACTGCTGCCCCTGCAAAGAG
ATCTAACCGGACCAACCACTTCCTACCCAGGCCCCTTGCCATCACCACCT
TGTCCCTTCAGTCTGATACACCAGGTAGACACCTCCCCTCACCATTTCCC
GCTCAGGTTCAGGCTGAGGAAGAGGGATAGCGTCAGGACCGATGAGCGGG
AGCCTGGTCCTCCAGTCTACAGAAGCGTGGAGAGGATCGAGAAGTACCCT
CGCTATCCCATGTGGCCTGTTCAGAACGGTGTGGATTGGGAGCTGCAGTA
GTTGGTGTGGTGAAGATTTTCCCCCTTATATGTGTTTCTCCCGAGCATTA
TGAAAGGTTGGATCTCGTGGTATGGGCTGTGGTGGCGCTGTGGCTCCTCG
TCAAAGTAGGGTAACCCCTAACCCTAAACATATCCCTGACACTAACCCTT
CGCTTTCCCTTTTGACCCCTAGAGCAGACCTCACCAAAGAACGGAAATTC
TTCTTTTTGTGGTTGTGAGT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9937:2029..3498-

>mRNA_D-mesarthrocarpus_Contig9937.4.1 ID=mRNA_D-mesarthrocarpus_Contig9937.4.1|Name=mRNA_D-mesarthrocarpus_Contig9937.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=447bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9937:2029..3498- (Discosporangium mesarthrocarpum MT17_79)
ATGTCTCCGTTGACACTGATCATTCTGGGACTGGCGGTGACGAATGCCGT
CGCCTGGGTCCCCGGTGGGATACAGGCACACCCTCACCAGTACTCTGGAA
AGCTATCAATGGCCAGGTCCGTTGTGGGCAAGTTCTGCAGCTCACACGCC
ATTCCCGACGCAGCACTGGTGACAGCGAAGAGTAGCTTCGCGGGATTCTC
CTTGGCATTACCAAGCGATAAAAAGTTCATTGAAGGGACCGACGGGGGGG
CAGGGGATAGGCGGAGCAAGGGAAGTATGTGGGCAGCCGTCCGATTCCCA
AGGTTCAGGCTGAGGAAGAGGGATAGCGTCAGGACCGATGAGCGGGAGCC
TGGTCCTCCAGTCTACAGAAGCGTGGAGAGGATCGAGAAGTACCCTCGCT
ATCCCATGTGGCCTGTTCAGAACGGTGTGGATTGGGAGCTGCAGTAG
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