mRNA_D-mesarthrocarpus_Contig9935.2.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9935.2.2
Unique NamemRNA_D-mesarthrocarpus_Contig9935.2.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9935.2.2 vs. uniprot
Match: A0A6H5KUE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUE0_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 3.020e-56
Identity = 131/332 (39.46%), Postives = 170/332 (51.20%), Query Frame = 2 
Query:  404 ESNFFLTRMIMAFEDTLGAKQDKIRDNEIEIIKRFTETIKVLDSALEIQEGDEFLAWLRDRGL----PLHEVGGSAASDEDAXXXGNNMHEGHGGVRVE---PTWKAEEQQVARKGEIAEFLLATEDKLDELAASGELLFRDSMGERDLAGKELYKVRRPCEAEAPYLGGGGGGVPLYPQPSVVSPRSISAS---AHLGAHQCLLYSCLEGLRENLDKGQLKPGLTVAEVVRTVQGVYLASPDDRLGAMFPLFDLHGTGQLDEESVSHAVDTVTVPIVAAVERLYEVGPRAALGKKGGVPMPRVMKWALWDILEVPLKKRCCFAWAEGRQQV 1369
            E  + + R++   +  LGAKQ+KIR +EI +I+RF   +  LD +LE +EGDEFLAWLR +G     P  + GG                E   G +VE      K+E      + E+  FL A   +L+ L    E       GE +       K  R         GG   G P      VVSP         A LGAH+ +L   L  L  +L K QLK GL++ EVV   +  YLA+P+DRL A++PLFD HG G LD ESV  AVD V + + AA ER Y    R AL KK    MP  MK+ LWD++EVP+K+RC FAWAE R+QV
Sbjct:  101 EELWIVGRVLDDMDTRLGAKQEKIRVHEIGVIERFAAVVSALDGSLEPREGDEFLAWLRSQGFDDASPTPQPGGGPXXX---------XXETAAGTKVENKCSNGKSEGGAAEERAEVEAFLSAASARLNALVVDKEDALFGDRGEAEAEESLQAKGERGGXXXXXXXGGDASGEP------VVSPNMSDEDLYQARLGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSAYLAAPEDRLAAVYPLFDTHGDGHLDTESVDLAVDAVVLSVTAASERCYAAAARPALDKKTAAVMPATMKYVLWDVMEVPMKRRCSFAWAENRKQV 417
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9935.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUE0_9PHAE3.020e-5639.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9935contigD-mesarthrocarpus_Contig9935:1738..4442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1369
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002220.1
Cds size942
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9935.2.2prot_D-mesarthrocarpus_Contig9935.2.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9935 2165..4442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791143.5254133-UTR-D-mesarthrocarpus_Contig9935:1737..21641680791143.5254133-UTR-D-mesarthrocarpus_Contig9935:1737..2164Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9935 1738..2164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791143.5423079-CDS-D-mesarthrocarpus_Contig9935:2164..22131680791143.5423079-CDS-D-mesarthrocarpus_Contig9935:2164..2213Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9935 2165..2213 +
1680791143.5527794-CDS-D-mesarthrocarpus_Contig9935:2437..28451680791143.5527794-CDS-D-mesarthrocarpus_Contig9935:2437..2845Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9935 2438..2845 +
1680791143.56277-CDS-D-mesarthrocarpus_Contig9935:3275..33491680791143.56277-CDS-D-mesarthrocarpus_Contig9935:3275..3349Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9935 3276..3349 +
1680791143.573911-CDS-D-mesarthrocarpus_Contig9935:3427..35811680791143.573911-CDS-D-mesarthrocarpus_Contig9935:3427..3581Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9935 3428..3581 +
1680791143.585014-CDS-D-mesarthrocarpus_Contig9935:4185..44421680791143.585014-CDS-D-mesarthrocarpus_Contig9935:4185..4442Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9935 4186..4442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9935.2.2

>prot_D-mesarthrocarpus_Contig9935.2.2 ID=prot_D-mesarthrocarpus_Contig9935.2.2|Name=mRNA_D-mesarthrocarpus_Contig9935.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=314bp
MIMAFEDTLGAKQDKIRDNEIEIIKRFTETIKVLDSALEIQEGDEFLAWL
RDRGLPLHEVGGSAASDEDAAGGGNNMHEGHGGVRVEPTWKAEEQQVARK
GEIAEFLLATEDKLDELAASGELLFRDSMGERDLAGKELYKVRRPCEAEA
PYLGGGGGGVPLYPQPSVVSPRSISASAHLGAHQCLLYSCLEGLRENLDK
GQLKPGLTVAEVVRTVQGVYLASPDDRLGAMFPLFDLHGTGQLDEESVSH
AVDTVTVPIVAAVERLYEVGPRAALGKKGGVPMPRVMKWALWDILEVPLK
KRCCFAWAEGRQQV
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9935:1738..4442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9935.2.2 ID=mRNA_D-mesarthrocarpus_Contig9935.2.2|Name=mRNA_D-mesarthrocarpus_Contig9935.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2705bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9935:1738..4442+ (Discosporangium mesarthrocarpum MT17_79)
GCGGTTCTTGGAGGGGTTTGTTACACTGTCGACAAACAAGGCCGAGACTA
CGAGTTAGGGAAGAATGCCAACAGAGGATTTTCTGTGAGATATCAGTCAT
CATGCCTGTGATCCCTTTCCGTTATTTGTTACCGCTTTGGTCTACCCTGT
AGACGAGTTCGCTGGCTCAGGTAGGACCGCCACGATCTTTTTCCTTGTAC
CTCTTGCCTCGATTGCACAACCACAAACTTGCTCGCCACAGGCTCTATCC
ATGCTCCACTATACTTGATGTAATAGTGGCTAGATTTTCACCGCTTTTTC
TTTCTTCTGCTTCGCCACAGCAACGACCCCAAACCCACCCCTTGCGGGTG
GCGGGTCCCCCGCGGTCGGTGACAAGGAGGGCAAGCCAAGCATAGTGAAC
GACGAATCAAACTTCTTCCTTACGCGGATGATAATGGCCTTTGAAGATAC
CCTTGGCGCCAAGCAGGACAAAATCAGTGAGCTGCGGTGGGGTTATGAAA
GGGATTTCGTTCTTCGCAGTGTTTGATAAACCACTGGAGGCGGAACCTAT
CGTTCCCACTTCCCTTGAAACAGTCCCCTCCGTAGATCTTCAGGTCACAC
TTGGGGGGGGGCATGAGCGTGAATCTGTGGGCCCGGTCCCACCCCCAGTC
ACCCGGGAAGCCCTTGTTGACCCCTCTCCAACACTAACGTATGACGACAG
GGGATAACGAGATCGAGATCATCAAGCGGTTCACAGAAACCATCAAGGTA
TTAGACTCCGCCCTGGAGATCCAGGAGGGAGACGAATTCCTAGCTTGGCT
ACGGGATAGGGGACTCCCCCTCCATGAGGTGGGAGGATCCGCTGCATCAG
ACGAGGACGCGGCTGGGGGTGGGAATAACATGCATGAGGGCCACGGGGGG
GTCCGGGTTGAGCCTACGTGGAAAGCAGAGGAGCAACAAGTCGCTAGGAA
AGGGGAAATTGCGGAGTTTTTGCTTGCGACAGAGGACAAGCTGGACGAGT
TGGCGGCAAGCGGGGAGCTGCTCTTTAGGGATTCAATGGGAGAACGGGAT
CTCGCGGGGAAGGAGCTGTACAAGGTTCGGCGGCCTTGTGAAGCAGAGGC
ACCATACTGTGTGTTCTGTTCCTCTCTTTGCATGGACTTGTACTTTTGTT
TACGCGTATGATTCGTTAGTCAGGAGTTGGTGTGGTAGAAGGGTGTTTGT
TCTCTTGGAGTGGTTGTGGCGAAGTTATGAATCACCGGAGAGGCTGCTTT
CAGTTTCTTGACAATGGCAAACGGGGTGTTACATTTCAAGATGGAATGTG
CTCCCTCCCCATCTAATGCTTGCATAGTTTCACGTCATAGTCTCACCTTC
CTGTCATCCGCTGCTGCTGCTACTGCTGCTGCTGCTTTGCTGCCCAATCT
GGCTTGGGGTTTTCAAAACACTAAAATCAAGGGCACTGAATTGATTATCA
TTTGCCTCGATTCATCAACAACGAACCACCACAAGCATGATCGCCCACCT
CCAGTAGGTGATGTCAAAACTCTCACTGCAGGTATTAGTAGGAGGAGGAG
GAGGAGGAGTACCCCTTTACCCCCAGCCCTCAGTCGTGTCACCTAGATCT
ATCTCTGCCTCTGTCAGAGAACATGCCACCATCATGCCACCACACTTACG
CCTCTTGCTCTCTATCTATACTTATTGTCTTTTGCTGAAGGCTCACCTGG
GAGCACATCAGTGCCTTCTCTACAGCTGTTTGGAGGGCCTGAGGGAGAAC
CTGGACAAGGGCCAACTCAAGCCTGGGCTGACAGTGGCGGAGGTGGTCAG
GACAGTGCAGGGAGTGTACCTAGCCAGCCCGGATGATAGACTAGGTAGGT
GCATGAAATCCTAACCCTAGGTGGAGCTCTCTTCTTTGTCTTGCTTGCCT
TCAAAACAGCAGGCTTTTTGGATAAGTCAAGAGTCTTCTTGGAGAAGTTG
GTGAGGGTCTCTGTTGAGCTTGGCTTTTCATGGCCGTTCATTCATTTCTT
TGTCAGGGTTCCTCTTCCTCCTCGAATGCCCATGTGTGTTAAGGAACTAG
TTGTCCTGCAATAGCAGACTGCTGCTGTTGCTTTTGATATCATGCGCTCT
TTTTTTTTTCCCCTGTTTTTCTTCCACATGCAACACCACTTTTCGACTTG
CCCTTTGACTTGCTCTAGCTATTTTGTCGTGTCCTTCTGCAGTTGAGCGA
AGGGTTAGGGTTAGGTTGCGCTGTGACTGCATAGCGCTTGCTCCCCTCTG
GCTGCTCACCTCCCCCTGACAAGAGGGTGCGCAGTGCACACATTATTCCA
CTGAAAGGGGCGCTTCCCCTGCGCTTAATTCAACACGTTTCCCTCTCCCT
CTCCCTCTCCCTCTCCCTCGCAGTCTTGCTGGAGAAAATAATAATAACAC
CCCTCCATCCCATCTCTTCCCCCCTGTCCACCCCCCTACCGCCCCCAGGG
GCGATGTTCCCTCTGTTTGACCTCCATGGGACTGGTCAACTGGACGAGGA
ATCAGTGTCCCACGCCGTGGACACAGTTACCGTCCCAATCGTGGCCGCAG
TGGAGCGGCTCTACGAGGTCGGCCCCAGGGCGGCCCTGGGGAAGAAGGGG
GGCGTGCCCATGCCCAGAGTCATGAAGTGGGCGCTCTGGGACATTCTGGA
AGTGCCGTTGAAGAAGAGGTGCTGCTTCGCTTGGGCAGAAGGCCGGCAGC
AGGTG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9935:1738..4442+

>mRNA_D-mesarthrocarpus_Contig9935.2.2 ID=mRNA_D-mesarthrocarpus_Contig9935.2.2|Name=mRNA_D-mesarthrocarpus_Contig9935.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=942bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9935:1738..4442+ (Discosporangium mesarthrocarpum MT17_79)
ATGATAATGGCCTTTGAAGATACCCTTGGCGCCAAGCAGGACAAAATCAG
GGATAACGAGATCGAGATCATCAAGCGGTTCACAGAAACCATCAAGGTAT
TAGACTCCGCCCTGGAGATCCAGGAGGGAGACGAATTCCTAGCTTGGCTA
CGGGATAGGGGACTCCCCCTCCATGAGGTGGGAGGATCCGCTGCATCAGA
CGAGGACGCGGCTGGGGGTGGGAATAACATGCATGAGGGCCACGGGGGGG
TCCGGGTTGAGCCTACGTGGAAAGCAGAGGAGCAACAAGTCGCTAGGAAA
GGGGAAATTGCGGAGTTTTTGCTTGCGACAGAGGACAAGCTGGACGAGTT
GGCGGCAAGCGGGGAGCTGCTCTTTAGGGATTCAATGGGAGAACGGGATC
TCGCGGGGAAGGAGCTGTACAAGGTTCGGCGGCCTTGTGAAGCAGAGGCA
CCATACTTAGGAGGAGGAGGAGGAGGAGTACCCCTTTACCCCCAGCCCTC
AGTCGTGTCACCTAGATCTATCTCTGCCTCTGCTCACCTGGGAGCACATC
AGTGCCTTCTCTACAGCTGTTTGGAGGGCCTGAGGGAGAACCTGGACAAG
GGCCAACTCAAGCCTGGGCTGACAGTGGCGGAGGTGGTCAGGACAGTGCA
GGGAGTGTACCTAGCCAGCCCGGATGATAGACTAGGGGCGATGTTCCCTC
TGTTTGACCTCCATGGGACTGGTCAACTGGACGAGGAATCAGTGTCCCAC
GCCGTGGACACAGTTACCGTCCCAATCGTGGCCGCAGTGGAGCGGCTCTA
CGAGGTCGGCCCCAGGGCGGCCCTGGGGAAGAAGGGGGGCGTGCCCATGC
CCAGAGTCATGAAGTGGGCGCTCTGGGACATTCTGGAAGTGCCGTTGAAG
AAGAGGTGCTGCTTCGCTTGGGCAGAAGGCCGGCAGCAGGTG
back to top