mRNA_D-mesarthrocarpus_Contig9930.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9930.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9930.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9930.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9930contigD-mesarthrocarpus_Contig9930:3263..4575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2F7
Preferred namePOLL
PFAMsBRCT_2,DNA_pol_B_palm,DNA_pol_B_thumb,DNA_pol_lambd_f,HHH_8
Model size1313
Max annot lvl2759|Eukaryota
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
Exons1
Evalue0.000435
EggNOG OGsCOG1796@1|root,KOG2534@2759|Eukaryota
EC2.7.7.7,5.4.2.11
DescriptionDNA polymerase
Cds size1311
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791143.397575-CDS-D-mesarthrocarpus_Contig9930:3262..45731680791143.397575-CDS-D-mesarthrocarpus_Contig9930:3262..4573Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9930 3263..4573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9930.1.1prot_D-mesarthrocarpus_Contig9930.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9930 3263..4573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9930.1.1

>prot_D-mesarthrocarpus_Contig9930.1.1 ID=prot_D-mesarthrocarpus_Contig9930.1.1|Name=mRNA_D-mesarthrocarpus_Contig9930.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=437bp
ETILNADTRLNHGLRPGMYRPEQEPFSTTRSSMAILAQRNRRFWSQLCGV
IAEVDEEERLQTASLVRRARELQQESKLWASPPQGCSAVDTNHDGSPLGK
DDGYAGSDVFSLSPPFAGLPFEIPKQVASSAAPPAVPTEDAATAESSSAE
ERMMKYAAPQAKGTWRHDMTREKSTRSVMPQLLAGSVTIGKRTSPTTTAP
QASLGIANMSADVILESEMRKSRASTNERKGSGKGKANDRDFGTKGGKRK
RSAREGSGPDADRTGDGRRTVAAFASLCIYAVRLGSVTKATVSTWARGIQ
RFGGEVTTEFLPGKTTQVVVDPLLQASTLTRHEDWENIMAWCSASMTTVK
AAERPADGVVRVLEGNKKAVSTRFGLGPGTHDRNGLGSATMGAVSLVEPE
WLVECLRQGRVVEETNYLLLSDTTWGLRRKSDPWYNS
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mRNA from alignment at D-mesarthrocarpus_Contig9930:3263..4575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9930.1.1 ID=mRNA_D-mesarthrocarpus_Contig9930.1.1|Name=mRNA_D-mesarthrocarpus_Contig9930.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1313bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9930:3263..4575+ (Discosporangium mesarthrocarpum MT17_79)
GAAACCATCCTGAACGCCGACACGCGACTCAATCATGGGCTACGTCCTGG
CATGTACAGACCTGAGCAAGAGCCCTTTTCCACCACACGATCCTCTATGG
CAATACTTGCCCAACGGAATCGACGGTTTTGGAGTCAGCTCTGCGGGGTT
ATTGCGGAAGTAGACGAAGAAGAGCGCCTGCAAACAGCGTCTCTCGTTCG
CCGCGCACGAGAGTTACAGCAGGAGTCGAAATTATGGGCGTCTCCACCTC
AGGGATGTTCAGCTGTAGATACGAATCACGATGGTTCACCATTGGGCAAG
GATGACGGCTATGCCGGCTCCGATGTGTTTTCACTCTCCCCTCCCTTTGC
AGGGCTGCCGTTCGAGATACCGAAGCAAGTTGCCTCTTCCGCAGCGCCAC
CGGCGGTACCAACAGAAGACGCAGCGACCGCCGAGTCTTCATCAGCAGAG
GAAAGGATGATGAAATATGCAGCGCCACAGGCTAAAGGTACTTGGCGCCA
TGACATGACAAGAGAAAAGAGCACGAGGAGCGTGATGCCGCAACTCCTTG
CCGGCAGTGTTACCATCGGGAAACGAACGAGCCCGACGACGACGGCGCCG
CAGGCTTCATTGGGAATCGCGAACATGTCTGCTGATGTTATCCTGGAGAG
TGAAATGAGGAAGTCGAGAGCCTCTACTAACGAGAGGAAGGGCTCGGGCA
AAGGCAAAGCCAATGACAGGGACTTCGGCACTAAAGGGGGTAAGCGCAAG
CGTTCTGCCCGAGAAGGAAGTGGCCCTGATGCCGACAGAACCGGCGACGG
CCGGAGAACTGTAGCCGCGTTCGCCTCCCTCTGTATCTATGCGGTACGCT
TGGGGTCTGTCACCAAGGCCACCGTCTCGACCTGGGCCAGGGGCATCCAG
CGTTTTGGAGGGGAAGTTACCACCGAATTTCTCCCGGGCAAAACCACCCA
GGTGGTGGTCGACCCCTTGCTGCAAGCCAGTACCCTAACGCGGCATGAAG
ACTGGGAGAACATCATGGCTTGGTGCAGTGCATCAATGACGACTGTTAAG
GCCGCAGAGAGGCCCGCAGATGGAGTGGTTCGGGTGTTGGAGGGAAACAA
GAAGGCGGTGTCAACGCGGTTTGGCCTGGGTCCAGGGACACATGATCGGA
ATGGGTTAGGGTCCGCAACAATGGGCGCAGTATCCCTGGTGGAACCAGAG
TGGCTGGTGGAGTGCCTAAGGCAGGGAAGAGTCGTGGAAGAGACCAACTA
TCTATTGCTATCAGACACCACCTGGGGGCTGAGGCGGAAATCGGATCCCT
GGTACAATTCCGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9930:3263..4575+

>mRNA_D-mesarthrocarpus_Contig9930.1.1 ID=mRNA_D-mesarthrocarpus_Contig9930.1.1|Name=mRNA_D-mesarthrocarpus_Contig9930.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1311bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9930:3263..4575+ (Discosporangium mesarthrocarpum MT17_79)
GAAACCATCCTGAACGCCGACACGCGACTCAATCATGGGCTACGTCCTGG
CATGTACAGACCTGAGCAAGAGCCCTTTTCCACCACACGATCCTCTATGG
CAATACTTGCCCAACGGAATCGACGGTTTTGGAGTCAGCTCTGCGGGGTT
ATTGCGGAAGTAGACGAAGAAGAGCGCCTGCAAACAGCGTCTCTCGTTCG
CCGCGCACGAGAGTTACAGCAGGAGTCGAAATTATGGGCGTCTCCACCTC
AGGGATGTTCAGCTGTAGATACGAATCACGATGGTTCACCATTGGGCAAG
GATGACGGCTATGCCGGCTCCGATGTGTTTTCACTCTCCCCTCCCTTTGC
AGGGCTGCCGTTCGAGATACCGAAGCAAGTTGCCTCTTCCGCAGCGCCAC
CGGCGGTACCAACAGAAGACGCAGCGACCGCCGAGTCTTCATCAGCAGAG
GAAAGGATGATGAAATATGCAGCGCCACAGGCTAAAGGTACTTGGCGCCA
TGACATGACAAGAGAAAAGAGCACGAGGAGCGTGATGCCGCAACTCCTTG
CCGGCAGTGTTACCATCGGGAAACGAACGAGCCCGACGACGACGGCGCCG
CAGGCTTCATTGGGAATCGCGAACATGTCTGCTGATGTTATCCTGGAGAG
TGAAATGAGGAAGTCGAGAGCCTCTACTAACGAGAGGAAGGGCTCGGGCA
AAGGCAAAGCCAATGACAGGGACTTCGGCACTAAAGGGGGTAAGCGCAAG
CGTTCTGCCCGAGAAGGAAGTGGCCCTGATGCCGACAGAACCGGCGACGG
CCGGAGAACTGTAGCCGCGTTCGCCTCCCTCTGTATCTATGCGGTACGCT
TGGGGTCTGTCACCAAGGCCACCGTCTCGACCTGGGCCAGGGGCATCCAG
CGTTTTGGAGGGGAAGTTACCACCGAATTTCTCCCGGGCAAAACCACCCA
GGTGGTGGTCGACCCCTTGCTGCAAGCCAGTACCCTAACGCGGCATGAAG
ACTGGGAGAACATCATGGCTTGGTGCAGTGCATCAATGACGACTGTTAAG
GCCGCAGAGAGGCCCGCAGATGGAGTGGTTCGGGTGTTGGAGGGAAACAA
GAAGGCGGTGTCAACGCGGTTTGGCCTGGGTCCAGGGACACATGATCGGA
ATGGGTTAGGGTCCGCAACAATGGGCGCAGTATCCCTGGTGGAACCAGAG
TGGCTGGTGGAGTGCCTAAGGCAGGGAAGAGTCGTGGAAGAGACCAACTA
TCTATTGCTATCAGACACCACCTGGGGGCTGAGGCGGAAATCGGATCCCT
GGTACAATTCC
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