mRNA_D-mesarthrocarpus_Contig9923.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9923.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9923.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A6H5JB66_9PHAE (Methylenetetrahydrofolate reductase (NAD(P)H) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB66_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 9.460e-62
Identity = 94/117 (80.34%), Postives = 99/117 (84.62%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            SLEFFPPRT  GVKNL  RL RMKA KPLFVD+TWGAGGSTAELTLDLT   K+ HG VPNMHLTCTNMP +K+DHAL  CK  G+RNIVALRGDPP GSDTWEAT GGFSCALDLV
Sbjct:   30 SLEFFPPRTDTGVKNLMERLGRMKATKPLFVDFTWGAGGSTAELTLDLTTRTKKEHGLVPNMHLTCTNMPVDKIDHALAQCKEHGIRNIVALRGDPPTGSDTWEATEGGFSCALDLV 146          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A836CIM9_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIM9_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.620e-51
Identity = 79/117 (67.52%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            SLEFFPPRT AGV NL  R+ R+K   P F+D+TWGAGG+TA+LTLDL + AK  HG  PNMHLTCTNMP  K+D+AL+ C+  GVRNIVALRGDPPAG + W A+ GGF CALDLV
Sbjct:   32 SLEFFPPRTVAGVVNLRERIQRLKRVAPFFIDFTWGAGGNTADLTLDLVLEAKLEHGLEPNMHLTCTNMPVLKIDNALQACREHGVRNIVALRGDPPAGENQWLASEGGFKCALDLV 148          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A7S3RLW6_9SPIT (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RLW6_9SPIT)

HSP 1 Score: 166 bits (419), Expect = 1.880e-50
Identity = 79/117 (67.52%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            S E+FPPRT  GV+NL  R+ RMK   P+F D+TWGAGGST+ELTL LT  AK  +G V NMHLTCTN  AE V  AL  CK  GVRNIVALRGDPP GS+ WEAT GGF+CALDLV
Sbjct:   22 SFEYFPPRTDEGVENLRKRIVRMKNLNPMFTDFTWGAGGSTSELTLTLTSAAKNEYGCVANMHLTCTNQKAEMVGDALTKCKELGVRNIVALRGDPPRGSEKWEATEGGFNCALDLV 138          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A7S3RLW0_9SPIT (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RLW0_9SPIT)

HSP 1 Score: 166 bits (419), Expect = 2.010e-50
Identity = 79/117 (67.52%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            S E+FPPRT  GV+NL  R+ RMK   P+F D+TWGAGGST+ELTL LT  AK  +G V NMHLTCTN  AE V  AL  CK  GVRNIVALRGDPP GS+ WEAT GGF+CALDLV
Sbjct:   24 SFEYFPPRTDEGVENLRKRIVRMKNLNPMFTDFTWGAGGSTSELTLTLTSAAKNEYGCVANMHLTCTNQKAEMVGDALTKCKELGVRNIVALRGDPPRGSEKWEATEGGFNCALDLV 140          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A836C869_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C869_9STRA)

HSP 1 Score: 172 bits (435), Expect = 4.010e-50
Identity = 78/116 (67.24%), Postives = 90/116 (77.59%), Query Frame = 1
Query:    4 LEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            LEFFPPRT  GV NL  RL R+K   P+F D+TWGAGGSTA+LTLDLT+ AK  HG  PNMHLTCTNMP E+++ AL  C+ +GV NIVALRGDPPAG+D WE + GG  CALDLV
Sbjct:   36 LEFFPPRTTQGVDNLRERLQRLKKVGPVFADFTWGAGGSTADLTLDLTLEAKHAHGLRPNMHLTCTNMPLERIESALRRCREEGVTNIVALRGDPPAGADHWERSEGGLGCALDLV 151          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A6V1V0A8_HETAK (Methylenetetrahydrofolate reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V0A8_HETAK)

HSP 1 Score: 173 bits (439), Expect = 1.600e-48
Identity = 81/117 (69.23%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            SLEFFPP+TA GV+NL  R+ RMK+  PLFVD+TWGAGGST+ELTLDL++ A++  G   NMHLTCTNM A KVD ALE CK  G+RNI+ALRGDPP G + WEAT GGF+CALDLV
Sbjct:   23 SLEFFPPKTAKGVENLVERIQRMKSIDPLFVDFTWGAGGSTSELTLDLSLKAQQEIGVQANMHLTCTNMEAAKVDAALEGCKRGGIRNILALRGDPPEGQEAWEATEGGFACALDLV 139          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A7S2V0I4_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0I4_9STRA)

HSP 1 Score: 171 bits (434), Expect = 9.810e-48
Identity = 81/117 (69.23%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            SLEFFPPRTA GV+NL ARL RMKA  P+F D+TWGAGGST+E+TL+LT GAK+     PNMHLTCTNMP EK+  AL+  +  GV NIVALRGDPP G + WE T GGFSCALDLV
Sbjct:  354 SLEFFPPRTAKGVENLMARLQRMKAVDPVFADFTWGAGGSTSEVTLELTKGAKQKAQVNPNMHLTCTNMPKEKITGALQEAREAGVTNIVALRGDPPHGEEKWEVTEGGFSCALDLV 470          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A7S3RM16_9SPIT (Methylenetetrahydrofolate reductase (Fragment) n=2 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RM16_9SPIT)

HSP 1 Score: 167 bits (422), Expect = 3.250e-47
Identity = 80/117 (68.38%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            S E+FPPRT  GV+NL  R+ RMK   P+F D+TWGAGGST+ELTL LT  AK  +G V NMHLTCTN  AE V  AL  CK  GVRNIVALRGDPP GS+ WEAT GGFSCALDLV
Sbjct:   24 SFEYFPPRTDEGVENLRKRIVRMKNLNPMFTDFTWGAGGSTSELTLTLTSAAKNEYGCVANMHLTCTNQKAEMVGDALTKCKELGVRNIVALRGDPPRGSEKWEATEGGFSCALDLV 140          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A7S1ALW9_NOCSC (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ALW9_NOCSC)

HSP 1 Score: 159 bits (402), Expect = 5.670e-47
Identity = 75/117 (64.10%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            S E+FPPRT  GVKNL  R+ RMK   PLF+D+TWGAGGST++LT+ L    K   G V NMHLTCTNM  +KVD AL  CK  G+ N+VALRGDPP G D WEAT GGF+CALDLV
Sbjct:   25 SFEYFPPRTEEGVKNLYKRILRMKTLDPLFLDFTWGAGGSTSDLTMQLCDKVKNEFGAVANMHLTCTNMEKDKVDVALADCKKFGICNLVALRGDPPRGEDKWEATEGGFTCALDLV 141          
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Match: A0A7S1C6C6_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6C6_9STRA)

HSP 1 Score: 162 bits (411), Expect = 7.110e-47
Identity = 75/117 (64.10%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    1 SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTIGAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGSDTWEATHGGFSCALDLV 351
            + E++PPRT  GV NL  RL RM   +PL+VD+TWGAGGSTA+LTL+LT+ +K+  G  PNMHLTCTNMP EK+  ALE  K+ G+ NIVALRGDPPAG   WEA  GGF+CALDLV
Sbjct:   31 AFEYYPPRTDDGVANLYKRLGRMAQQEPLYVDFTWGAGGSTADLTLELTVESKKRFGLEPNMHLTCTNMPVEKITTALEGAKAAGITNIVALRGDPPAGEAKWEAVEGGFACALDLV 147          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9923.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB66_9PHAE9.460e-6280.34Methylenetetrahydrofolate reductase (NAD(P)H) n=2 ... [more]
A0A836CIM9_9STRA1.620e-5167.52Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S3RLW6_9SPIT1.880e-5067.52Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A7S3RLW0_9SPIT2.010e-5067.52Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A836C869_9STRA4.010e-5067.24Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A6V1V0A8_HETAK1.600e-4869.23Methylenetetrahydrofolate reductase n=1 Tax=Hetero... [more]
A0A7S2V0I4_9STRA9.810e-4869.23Methylenetetrahydrofolate reductase n=1 Tax=Fibroc... [more]
A0A7S3RM16_9SPIT3.250e-4768.38Methylenetetrahydrofolate reductase (Fragment) n=2... [more]
A0A7S1ALW9_NOCSC5.670e-4764.10Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A7S1C6C6_9STRA7.110e-4764.10Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9923contigD-mesarthrocarpus_Contig9923:908..2222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCN9
PFAMsMTHFR
Model size351
Max annot lvl2759|Eukaryota
KEGG rclassRC00081
KEGG koko:K00297
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523
KEGG ModuleM00377
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.76e-60
EggNOG OGsCOG0685@1|root,KOG0564@2759|Eukaryota
EC1.5.1.20
Descriptionmethylenetetrahydrofolate reductase (NAD(P)H) activity
Cds size351
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791142.9977162-CDS-D-mesarthrocarpus_Contig9923:907..10121680791142.9977162-CDS-D-mesarthrocarpus_Contig9923:907..1012Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9923 908..1012 -
1680791143.0113993-CDS-D-mesarthrocarpus_Contig9923:1580..17931680791143.0113993-CDS-D-mesarthrocarpus_Contig9923:1580..1793Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9923 1581..1793 -
1680791143.023876-CDS-D-mesarthrocarpus_Contig9923:2189..22221680791143.023876-CDS-D-mesarthrocarpus_Contig9923:2189..2222Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9923 2190..2222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9923.1.1prot_D-mesarthrocarpus_Contig9923.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9923 908..2222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9923.1.1

>prot_D-mesarthrocarpus_Contig9923.1.1 ID=prot_D-mesarthrocarpus_Contig9923.1.1|Name=mRNA_D-mesarthrocarpus_Contig9923.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=117bp
SLEFFPPRTAAGVKNLDARLDRMKAAKPLFVDYTWGAGGSTAELTLDLTI
GAKENHGQVPNMHLTCTNMPAEKVDHALELCKSKGVRNIVALRGDPPAGS
DTWEATHGGFSCALDLV
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mRNA from alignment at D-mesarthrocarpus_Contig9923:908..2222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9923.1.1 ID=mRNA_D-mesarthrocarpus_Contig9923.1.1|Name=mRNA_D-mesarthrocarpus_Contig9923.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1315bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9923:908..2222- (Discosporangium mesarthrocarpum MT17_79)
TCGCTGGAGTTCTTTCCTCCTCGTACAGCTGCGGTGGGTGGACACGTTGC CCTGAGGAGATGTGTTACATTGGCCCGTGTCTTTGCTACACGATAGATTG ATCATATTAAAAGAAAATGACATGTCGTAAGCTCATCTCTCAAAGCTCAT CGAGATCGGGCAACCCAAACTGAAGTGCTGAATTTCGGACTGTATTTCTA TCATGATCCACACAGTGTGCGTTGGGTGTTGACCCGGTGTCCTTCTGACC TAGTCCGCGACTTGATCAATTCTTCTTGGAGAACATTGTCATTTACTATG TGCTTGCTCAGCCCGAAGACCTCTCGACTTAAGTGGGATTTGGCTGCAAC AGGGTCTCTCCTCTCGGCTCCATTCCCGATTTGCCCGAGAATGTCCCCAC CTCCGTCCATCTCCTTACACACATACCAGGGGGTGAAGAACCTGGATGCT CGCCTTGATCGAATGAAGGCGGCCAAACCACTCTTTGTGGACTACACCTG GGGTGCGGGGGGGAGCACCGCAGAACTTACGCTTGACCTGACCATTGGGG CGAAGGAGAACCACGGCCAGGTGCCAAACATGCACCTGACATGCACTAAC ATGCCCGCGGAGAAGGTCGACCACGCGCTTGAGCTCTGCAAGGTGTGTCC TATCTGCTATCCAATGGATGCAAGGAATGAGATAAAGCTCCTCTCTCTGT TCCCTCATATGAAACATGCTTTGGTGTTTTCGGGCCCTCGTGTGGTCAGG CTAAATTACAAGTGAATATATTGCTGTGACGTAGGCGGGCGTGGCAGGGA TAATCCTTTATCGCCAAGCCAAAGAAACAACCCCCTAACCATAAGGGGAA GGTGTATAGTATCATCGACCCTGACTTTAGATACTGGACGTACCGTTGCA TGCCTAATACCGAGGCCGCAATTGACCGGCGTATGGTTACTTTCGTTCCC AGCCCTAACCCCTCGCCCTGTTTCGAACAACTACCTTACGGTAGAGGTTT TAAGCTGTGCTTTTACACCACCATACTGTGAGTTACGTGCACTACACTAT GCCTACACAGAGAATAGACTCTAACCCTAACTCTGTTCAACTACCAACAT GTAAATGGACTACGTGTCTTGCCGCTCATCCTCCTGTCCTCCTGTCTTCC TGTCCACACCAACGCTGTTTCCACGAACAAAAATAAAATAACATGGAAAC AATGAGCCAGTCCAAGGGAGTGAGGAATATTGTGGCACTGCGGGGGGATC CGCCGGCAGGTTCTGACACCTGGGAAGCAACACACGGGGGGTTTTCTTGT GCGCTTGATCTGGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9923:908..2222-

>mRNA_D-mesarthrocarpus_Contig9923.1.1 ID=mRNA_D-mesarthrocarpus_Contig9923.1.1|Name=mRNA_D-mesarthrocarpus_Contig9923.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=351bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9923:908..2222- (Discosporangium mesarthrocarpum MT17_79)
TCGCTGGAGTTCTTTCCTCCTCGTACAGCTGCGGGGGTGAAGAACCTGGA
TGCTCGCCTTGATCGAATGAAGGCGGCCAAACCACTCTTTGTGGACTACA
CCTGGGGTGCGGGGGGGAGCACCGCAGAACTTACGCTTGACCTGACCATT
GGGGCGAAGGAGAACCACGGCCAGGTGCCAAACATGCACCTGACATGCAC
TAACATGCCCGCGGAGAAGGTCGACCACGCGCTTGAGCTCTGCAAGTCCA
AGGGAGTGAGGAATATTGTGGCACTGCGGGGGGATCCGCCGGCAGGTTCT
GACACCTGGGAAGCAACACACGGGGGGTTTTCTTGTGCGCTTGATCTGGT
G
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