mRNA_D-mesarthrocarpus_Contig9914.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI) HSP 1 Score: 357 bits (917), Expect = 3.400e-113 Identity = 182/246 (73.98%), Postives = 206/246 (83.74%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALT--------EVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLE 714
RGAG+TITPYAAGR+IGAAVWRV WQT+DNDIVYATAYN+ ER HL ALG+L+RPSVLITDAHNALT RK RE L++ VMDT+RGGGNVLLPTDTAGRVLELLVLL+ +W+K++LGSY+LVLLHNTAFNT E+AKSQLEWMS +I R FDLQRSNPF+L NVHI+HSLEELDELG DPKVV+ATDMSLD+GFSKALLLRWA N ILLTGRGHG+TTAR L+A+ E
Sbjct: 266 RGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHER----HLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKSE 507
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA) HSP 1 Score: 310 bits (795), Expect = 1.850e-96 Identity = 154/235 (65.53%), Postives = 186/235 (79.15%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALT-EVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
RGAG+TITPYAAG IIG ++WR+CWQTDDNDIVYA +YNH+ E HL A+ +LSRPS++ITDAH LT + K + R + L +V T+R GGNVLLP DTAGRVLELL+LLD HW +NKLGSY LVLLH+ AFNT E+AKSQLEWMS+ IS+ FDLQRSNPF++ +V + HSLEEL LG P VVLATD+SLD+GF+KALLL WA +P+N +LLT RGHGD+ AR LL
Sbjct: 192 RGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREE----HLNGGAVETLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSYPLVLLHSMAFNTGEFAKSQLEWMSDAISKQFDLQRSNPFEMRHVAMAHSLEELQALGTGPMVVLATDLSLDFGFAKALLLAWAADPLNLVLLTQRGHGDSVARELL 422
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO) HSP 1 Score: 229 bits (585), Expect = 9.760e-67 Identity = 119/238 (50.00%), Postives = 159/238 (66.81%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLE 714
+G GITITP+ AG +G WR+ + +D I+YA YNH+ ER HL AL + +RP+VLITDA+N LTE SRK R+ L+A VM T+R GGNVL+P DTA RVLELL++LD HW+ K+G Y LVLL+N A+N E+AKS LE+M+++IS+ F+ R N F NVH+ HSLEEL+EL PKVVLA+ SL+ G + LL+ WA +P N IL R T + + ++
Sbjct: 151 KGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKER----HLNGAALHTFNRPAVLITDAYNGLTEQTSRKLRDRTLVAGVMQTLRSGGNVLIPVDTATRVLELLLVLDSHWEHQKIGLYSLVLLNNVAYNVVEFAKSMLEFMNSDISKSFEHTRDNVFDCKNVHLCHSLEELEELPDQPKVVLASMASLEAGLGRNLLVDWASDPDNLILFVERAQAGTLSSFIQTYMD 382
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: L8GYA6_ACACA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYA6_ACACA) HSP 1 Score: 230 bits (586), Expect = 1.850e-66 Identity = 120/236 (50.85%), Postives = 157/236 (66.53%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQ 708
RGAGI +TPY G +IG VW++ +T++ I+YA YNHK ER HL P L +L+RP++LITDA N L+ SR+SR+ LL M T++G GNVLLPTDTAGRVLELL+ D HW +L Y LVLL A+NT E+AKSQLEWMS + + FDL R NPF+ V + HS+EEL+ L K P VVLAT SL++GF++ L + W+ NP +A++ T R T +L Q
Sbjct: 104 RGAGIELTPYVGGHMIGGTVWKITKETEE--ILYAVDYNHKKER----HLNPTVLETLNRPTLLITDAFNGLSTQSSRRSRDMDLLDTTMKTLKGDGNVLLPTDTAGRVLELLLTFDQHWAYYRLSQYGLVLLEKQAYNTIEFAKSQLEWMSTAVQKSFDLDRVNPFEFKFVRLCHSVEELEALPK-PLVVLATTASLEWGFARDLFVEWSSNPRHAVIFTDRPQPGTLGHLVLTQ 332
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A7S0N1Z8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1Z8_9CHLO) HSP 1 Score: 211 bits (536), Expect = 4.390e-62 Identity = 107/232 (46.12%), Postives = 153/232 (65.95%), Query Frame = 1
Query: 7 AGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
A +T+TPY AG ++G +W++ +T+D +VYA +NHK ER HL L S +RPS+LITDA NA +R +R+ L V +RGGG+VL+P DTAGRVLEL++ L+ +W KL SY+LVLL N A+NT E+AKS +EWM++ IS FD R+N F+ ++H+ HS+EEL LG PK+V+A+ SL+ G ++ L + WA NP N +L G +T AR ++
Sbjct: 149 AAVTVTPYNAGHLLGGTLWKISKETED--VVYAVDFNHKKER----HLNGTVLESFNRPSLLITDAFNAANRPPARAARDKELTDTVAKVLRGGGSVLIPIDTAGRVLELVLHLEQYWTVAKLASYKLVLLTNVAYNTMEFAKSHIEWMNDAISTTFDQTRTNAFKTRHLHLCHSVEELAGLGPGPKLVMASMQSLEVGPARELFVTWATNPRNLLLFPDMGQPNTLAREVM 374
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A8K0KET0_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KET0_LADFU) HSP 1 Score: 208 bits (530), Expect = 1.750e-61 Identity = 110/244 (45.08%), Postives = 158/244 (64.75%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLEGGGG 726
+G G+TITP AG +IG +W++ + + DIVYA +NHK ER HL C L L RPS+LITDA NA + R++R+ +L+ ++ T+R GNVL+ DTAGRVLEL +LD W+ G +Y L LL+N ++N E+AKSQ+EWMS+++ R F+ R+NPFQ ++ + HS+ EL + PKVVLA+ ++ GFS+ L L+W NP+N+I++T R T AR L+ GGGG
Sbjct: 140 KGYGLTITPLPAGHMIGGTIWKIV-KVGEEDIVYAADFNHKKER----HLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRNNGNVLVAVDTAGRVLELAHMLDQLWRNKDSGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRTFEGARNNPFQFRHLQLCHSIAELGRV-PSPKVVLASMPDMECGFSRDLFLQWCSNPLNSIIITNRTSPGTLARQLMEN--GGGG 375
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A0T6BGA6_9SCAR (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6BGA6_9SCAR) HSP 1 Score: 206 bits (524), Expect = 4.850e-61 Identity = 105/236 (44.49%), Postives = 156/236 (66.10%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
+G G+TITP AG +IG +W++ + + DI+YA +NHK ER HL C L L RPS+LITDA NA + R++R+ +L+ ++ T+R GNVL+ DTAGRVLEL +LD W+ + G +Y L LL+N ++N E+AKSQ+EWMS+++ + F+ R+NPFQ ++ + HSL+EL ++ PKVVLA+ ++ GFS+ L L+W NP N+I++T R T AR L+
Sbjct: 140 KGYGLTITPLPAGHMIGGTIWKIM-KVGEEDIIYANDFNHKKER----HLNGCELEKLQRPSLLITDAFNANYQQARRRTRDEKLMTNILQTLRNNGNVLVAVDTAGRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARNNPFQFRHLQLCHSLQELGKV-PSPKVVLASSADMESGFSRELFLQWCSNPNNSIIITTRTSPGTLARDLV 369
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A7R8VTL3_TIMDO (Cleavage and polyadenylation specificity factor subunit 2 n=3 Tax=Timema TaxID=61471 RepID=A0A7R8VTL3_TIMDO) HSP 1 Score: 208 bits (529), Expect = 1.130e-60 Identity = 106/236 (44.92%), Postives = 156/236 (66.10%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
+G G+TITP AG +IG +W++ + + DIVYAT YNHK ER HL C L L RPS+LI D+ NA R++R+ +L+ ++ T+R GNVL+ DTAGRVLEL +LD W+ G +Y L LL+N ++N E+AKSQ+EWMS+++ R F+ R+NPFQ ++ + HS++EL+++ PKVVLA+ ++ GFS+ L L+W NP+N+I++T R T AR L+
Sbjct: 140 KGYGLTITPLPAGHMIGGTIWKIV-KVGEEDIVYATDYNHKKER----HLNGCELERLQRPSLLIADSFNATYLQARRRTRDEKLMTNILQTLRSNGNVLIAVDTAGRVLELAHMLDQLWRNKDSGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRTFEGARNNPFQFKHLQLCHSIQELNKV-PSPKVVLASSPDMECGFSRELFLQWCTNPLNSIIITNRTAPGTLARQLI 369
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A1B6GV48_9HEMI (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6GV48_9HEMI) HSP 1 Score: 206 bits (525), Expect = 1.520e-60 Identity = 109/243 (44.86%), Postives = 157/243 (64.61%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLEGGG 723
+G GITITP AG +IG +W++ + + DI+YA +NHK ER HL C L L RPS+LITDA NA + R++R+ +L+ ++ T+R GNVL+ DTAGRVLEL +LD W+ G +Y L LL+N ++N E+AKSQ+EWMS+++ R F+ R+NPFQ +V + HS+ EL+ + PKVVLA+ ++ GFS+ L L+W P N+I++T R T AR L+ +GGG
Sbjct: 140 KGYGITITPLPAGHMIGGTMWKIM-KVGEEDIIYAVDFNHKKER----HLNGCELERLQRPSLLITDAFNATYQQARRRARDEKLMTNILQTLRNNGNVLVTVDTAGRVLELAHMLDQLWRNKDSGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARNNPFQFKHVQLCHSMAELNRVSS-PKVVLASSSDMECGFSRELFLQWCTKPNNSIIITNRTSPGTLARELV---DGGG 373
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: UPI001EDD2D5C (probable cleavage and polyadenylation specificity factor subunit 2 isoform X2 n=4 Tax=Diprioninae TaxID=410274 RepID=UPI001EDD2D5C) HSP 1 Score: 212 bits (540), Expect = 1.760e-60 Identity = 107/236 (45.34%), Postives = 159/236 (67.37%), Query Frame = 1
Query: 1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
+G G+T+TP AG +IG +W++ + + DI+YA +NHK ER HL C L L RPS+LITDA NA+ + R++R+ +L+ ++ T+RGGGNVL+ DTAGRVLEL +LD W+ + G +Y L LL+N ++N E+AKSQ+EWMS+++ R F+ R+NPFQ ++ + HS+ EL+++ PKVVLA+ ++ GFS+ L L+W NP N+I+LT R T AR L+
Sbjct: 97 KGYGVTLTPLPAGHMIGGTIWKIV-KVGEEDIIYAVDFNHKKER----HLNGCELERLQRPSLLITDAFNAMYQQARRRTRDEKLMTNILQTLRGGGNVLVGVDTAGRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARNNPFQFKHLQLCHSMAELNQV-PSPKVVLASTPDMECGFSRELFLQWCSNPQNSIILTSRTSPGTLARDLV 326 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9914.1.1 >prot_D-mesarthrocarpus_Contig9914.1.1 ID=prot_D-mesarthrocarpus_Contig9914.1.1|Name=mRNA_D-mesarthrocarpus_Contig9914.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=272bp RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLback to top mRNA from alignment at D-mesarthrocarpus_Contig9914:6..4433- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9914.1.1 ID=mRNA_D-mesarthrocarpus_Contig9914.1.1|Name=mRNA_D-mesarthrocarpus_Contig9914.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4428bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9914:6..4433- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9914:6..4433- >mRNA_D-mesarthrocarpus_Contig9914.1.1 ID=mRNA_D-mesarthrocarpus_Contig9914.1.1|Name=mRNA_D-mesarthrocarpus_Contig9914.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=816bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9914:6..4433- (Discosporangium mesarthrocarpum MT17_79)back to top |