mRNA_D-mesarthrocarpus_Contig9914.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9914.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9914.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 3.400e-113
Identity = 182/246 (73.98%), Postives = 206/246 (83.74%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALT--------EVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLE 714
            RGAG+TITPYAAGR+IGAAVWRV WQT+DNDIVYATAYN+  ER    HL   ALG+L+RPSVLITDAHNALT            RK RE  L++ VMDT+RGGGNVLLPTDTAGRVLELLVLL+ +W+K++LGSY+LVLLHNTAFNT E+AKSQLEWMS +I R FDLQRSNPF+L NVHI+HSLEELDELG DPKVV+ATDMSLD+GFSKALLLRWA    N ILLTGRGHG+TTAR L+A+ E
Sbjct:  266 RGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHER----HLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKSE 507          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 310 bits (795), Expect = 1.850e-96
Identity = 154/235 (65.53%), Postives = 186/235 (79.15%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALT-EVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
            RGAG+TITPYAAG IIG ++WR+CWQTDDNDIVYA +YNH+ E     HL   A+ +LSRPS++ITDAH  LT + K  + R + L  +V  T+R GGNVLLP DTAGRVLELL+LLD HW +NKLGSY LVLLH+ AFNT E+AKSQLEWMS+ IS+ FDLQRSNPF++ +V + HSLEEL  LG  P VVLATD+SLD+GF+KALLL WA +P+N +LLT RGHGD+ AR LL
Sbjct:  192 RGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREE----HLNGGAVETLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSYPLVLLHSMAFNTGEFAKSQLEWMSDAISKQFDLQRSNPFEMRHVAMAHSLEELQALGTGPMVVLATDLSLDFGFAKALLLAWAADPLNLVLLTQRGHGDSVARELL 422          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO)

HSP 1 Score: 229 bits (585), Expect = 9.760e-67
Identity = 119/238 (50.00%), Postives = 159/238 (66.81%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLE 714
            +G GITITP+ AG  +G   WR+  + +D  I+YA  YNH+ ER    HL   AL + +RP+VLITDA+N LTE  SRK R+  L+A VM T+R GGNVL+P DTA RVLELL++LD HW+  K+G Y LVLL+N A+N  E+AKS LE+M+++IS+ F+  R N F   NVH+ HSLEEL+EL   PKVVLA+  SL+ G  + LL+ WA +P N IL   R    T +  +   ++
Sbjct:  151 KGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKER----HLNGAALHTFNRPAVLITDAYNGLTEQTSRKLRDRTLVAGVMQTLRSGGNVLIPVDTATRVLELLLVLDSHWEHQKIGLYSLVLLNNVAYNVVEFAKSMLEFMNSDISKSFEHTRDNVFDCKNVHLCHSLEELEELPDQPKVVLASMASLEAGLGRNLLVDWASDPDNLILFVERAQAGTLSSFIQTYMD 382          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: L8GYA6_ACACA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYA6_ACACA)

HSP 1 Score: 230 bits (586), Expect = 1.850e-66
Identity = 120/236 (50.85%), Postives = 157/236 (66.53%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQ 708
            RGAGI +TPY  G +IG  VW++  +T++  I+YA  YNHK ER    HL P  L +L+RP++LITDA N L+   SR+SR+  LL   M T++G GNVLLPTDTAGRVLELL+  D HW   +L  Y LVLL   A+NT E+AKSQLEWMS  + + FDL R NPF+   V + HS+EEL+ L K P VVLAT  SL++GF++ L + W+ NP +A++ T R    T    +L Q
Sbjct:  104 RGAGIELTPYVGGHMIGGTVWKITKETEE--ILYAVDYNHKKER----HLNPTVLETLNRPTLLITDAFNGLSTQSSRRSRDMDLLDTTMKTLKGDGNVLLPTDTAGRVLELLLTFDQHWAYYRLSQYGLVLLEKQAYNTIEFAKSQLEWMSTAVQKSFDLDRVNPFEFKFVRLCHSVEELEALPK-PLVVLATTASLEWGFARDLFVEWSSNPRHAVIFTDRPQPGTLGHLVLTQ 332          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A7S0N1Z8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1Z8_9CHLO)

HSP 1 Score: 211 bits (536), Expect = 4.390e-62
Identity = 107/232 (46.12%), Postives = 153/232 (65.95%), Query Frame = 1
Query:    7 AGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
            A +T+TPY AG ++G  +W++  +T+D  +VYA  +NHK ER    HL    L S +RPS+LITDA NA     +R +R+  L   V   +RGGG+VL+P DTAGRVLEL++ L+ +W   KL SY+LVLL N A+NT E+AKS +EWM++ IS  FD  R+N F+  ++H+ HS+EEL  LG  PK+V+A+  SL+ G ++ L + WA NP N +L    G  +T AR ++
Sbjct:  149 AAVTVTPYNAGHLLGGTLWKISKETED--VVYAVDFNHKKER----HLNGTVLESFNRPSLLITDAFNAANRPPARAARDKELTDTVAKVLRGGGSVLIPIDTAGRVLELVLHLEQYWTVAKLASYKLVLLTNVAYNTMEFAKSHIEWMNDAISTTFDQTRTNAFKTRHLHLCHSVEELAGLGPGPKLVMASMQSLEVGPARELFVTWATNPRNLLLFPDMGQPNTLAREVM 374          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A8K0KET0_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KET0_LADFU)

HSP 1 Score: 208 bits (530), Expect = 1.750e-61
Identity = 110/244 (45.08%), Postives = 158/244 (64.75%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLEGGGG 726
            +G G+TITP  AG +IG  +W++  +  + DIVYA  +NHK ER    HL  C L  L RPS+LITDA NA  +   R++R+ +L+  ++ T+R  GNVL+  DTAGRVLEL  +LD  W+    G  +Y L LL+N ++N  E+AKSQ+EWMS+++ R F+  R+NPFQ  ++ + HS+ EL  +   PKVVLA+   ++ GFS+ L L+W  NP+N+I++T R    T AR L+    GGGG
Sbjct:  140 KGYGLTITPLPAGHMIGGTIWKIV-KVGEEDIVYAADFNHKKER----HLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRNNGNVLVAVDTAGRVLELAHMLDQLWRNKDSGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRTFEGARNNPFQFRHLQLCHSIAELGRV-PSPKVVLASMPDMECGFSRDLFLQWCSNPLNSIIITNRTSPGTLARQLMEN--GGGG 375          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A0T6BGA6_9SCAR (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6BGA6_9SCAR)

HSP 1 Score: 206 bits (524), Expect = 4.850e-61
Identity = 105/236 (44.49%), Postives = 156/236 (66.10%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
            +G G+TITP  AG +IG  +W++  +  + DI+YA  +NHK ER    HL  C L  L RPS+LITDA NA  +   R++R+ +L+  ++ T+R  GNVL+  DTAGRVLEL  +LD  W+  + G  +Y L LL+N ++N  E+AKSQ+EWMS+++ + F+  R+NPFQ  ++ + HSL+EL ++   PKVVLA+   ++ GFS+ L L+W  NP N+I++T R    T AR L+
Sbjct:  140 KGYGLTITPLPAGHMIGGTIWKIM-KVGEEDIIYANDFNHKKER----HLNGCELEKLQRPSLLITDAFNANYQQARRRTRDEKLMTNILQTLRNNGNVLVAVDTAGRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARNNPFQFRHLQLCHSLQELGKV-PSPKVVLASSADMESGFSRELFLQWCSNPNNSIIITTRTSPGTLARDLV 369          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A7R8VTL3_TIMDO (Cleavage and polyadenylation specificity factor subunit 2 n=3 Tax=Timema TaxID=61471 RepID=A0A7R8VTL3_TIMDO)

HSP 1 Score: 208 bits (529), Expect = 1.130e-60
Identity = 106/236 (44.92%), Postives = 156/236 (66.10%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
            +G G+TITP  AG +IG  +W++  +  + DIVYAT YNHK ER    HL  C L  L RPS+LI D+ NA      R++R+ +L+  ++ T+R  GNVL+  DTAGRVLEL  +LD  W+    G  +Y L LL+N ++N  E+AKSQ+EWMS+++ R F+  R+NPFQ  ++ + HS++EL+++   PKVVLA+   ++ GFS+ L L+W  NP+N+I++T R    T AR L+
Sbjct:  140 KGYGLTITPLPAGHMIGGTIWKIV-KVGEEDIVYATDYNHKKER----HLNGCELERLQRPSLLIADSFNATYLQARRRTRDEKLMTNILQTLRSNGNVLIAVDTAGRVLELAHMLDQLWRNKDSGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRTFEGARNNPFQFKHLQLCHSIQELNKV-PSPKVVLASSPDMECGFSRELFLQWCTNPLNSIIITNRTAPGTLARQLI 369          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: A0A1B6GV48_9HEMI (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6GV48_9HEMI)

HSP 1 Score: 206 bits (525), Expect = 1.520e-60
Identity = 109/243 (44.86%), Postives = 157/243 (64.61%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLEGGG 723
            +G GITITP  AG +IG  +W++  +  + DI+YA  +NHK ER    HL  C L  L RPS+LITDA NA  +   R++R+ +L+  ++ T+R  GNVL+  DTAGRVLEL  +LD  W+    G  +Y L LL+N ++N  E+AKSQ+EWMS+++ R F+  R+NPFQ  +V + HS+ EL+ +   PKVVLA+   ++ GFS+ L L+W   P N+I++T R    T AR L+   +GGG
Sbjct:  140 KGYGITITPLPAGHMIGGTMWKIM-KVGEEDIIYAVDFNHKKER----HLNGCELERLQRPSLLITDAFNATYQQARRRARDEKLMTNILQTLRNNGNVLVTVDTAGRVLELAHMLDQLWRNKDSGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARNNPFQFKHVQLCHSMAELNRVSS-PKVVLASSSDMECGFSRELFLQWCTKPNNSIIITNRTSPGTLARELV---DGGG 373          
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Match: UPI001EDD2D5C (probable cleavage and polyadenylation specificity factor subunit 2 isoform X2 n=4 Tax=Diprioninae TaxID=410274 RepID=UPI001EDD2D5C)

HSP 1 Score: 212 bits (540), Expect = 1.760e-60
Identity = 107/236 (45.34%), Postives = 159/236 (67.37%), Query Frame = 1
Query:    1 RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHLGPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVLLPTDTAGRVLELLVLLDGHWKKNKLG--SYRLVLLHNTAFNTAEYAKSQLEWMSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDYGFSKALLLRWAPNPINAILLTGRGHGDTTARHLL 702
            +G G+T+TP  AG +IG  +W++  +  + DI+YA  +NHK ER    HL  C L  L RPS+LITDA NA+ +   R++R+ +L+  ++ T+RGGGNVL+  DTAGRVLEL  +LD  W+  + G  +Y L LL+N ++N  E+AKSQ+EWMS+++ R F+  R+NPFQ  ++ + HS+ EL+++   PKVVLA+   ++ GFS+ L L+W  NP N+I+LT R    T AR L+
Sbjct:   97 KGYGVTLTPLPAGHMIGGTIWKIV-KVGEEDIIYAVDFNHKKER----HLNGCELERLQRPSLLITDAFNAMYQQARRRTRDEKLMTNILQTLRGGGNVLVGVDTAGRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARNNPFQFKHLQLCHSMAELNQV-PSPKVVLASTPDMECGFSRELFLQWCSNPQNSIILTSRTSPGTLARDLV 326          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9914.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI3.400e-11373.98Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA1.850e-9665.53Cleavage and polyadenylation specificity factor su... [more]
A0A6U9RRA8_9CHLO9.760e-6750.00Cleavage and polyadenylation specificity factor su... [more]
L8GYA6_ACACA1.850e-6650.85Cleavage and polyadenylation specificity factor su... [more]
A0A7S0N1Z8_9CHLO4.390e-6246.12Cleavage and polyadenylation specificity factor su... [more]
A0A8K0KET0_LADFU1.750e-6145.08Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A0T6BGA6_9SCAR4.850e-6144.49Cleavage and polyadenylation specificity factor su... [more]
A0A7R8VTL3_TIMDO1.130e-6044.92Cleavage and polyadenylation specificity factor su... [more]
A0A1B6GV48_9HEMI1.520e-6044.86Cleavage and polyadenylation specificity factor su... [more]
UPI001EDD2D5C1.760e-6045.34probable cleavage and polyadenylation specificity ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9914contigD-mesarthrocarpus_Contig9914:6..4433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQA4
Preferred nameCPSF2
PFAMsBeta-Casp,CPSF100_C,Lactamase_B_6,RMMBL
Model size816
Max annot lvl2759|Eukaryota
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons5
Evalue5.57e-114
EggNOG OGsCOG1236@1|root,KOG1135@2759|Eukaryota
DescriptionmRNA cleavage
Cds size816
COG categoryJ
BRITEko00000,ko00001,ko01009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791141.9307494-CDS-D-mesarthrocarpus_Contig9914:5..2541680791141.9307494-CDS-D-mesarthrocarpus_Contig9914:5..254Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9914 6..254 -
1680791141.9431572-CDS-D-mesarthrocarpus_Contig9914:1842..19681680791141.9431572-CDS-D-mesarthrocarpus_Contig9914:1842..1968Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9914 1843..1968 -
1680791141.958768-CDS-D-mesarthrocarpus_Contig9914:2407..25291680791141.958768-CDS-D-mesarthrocarpus_Contig9914:2407..2529Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9914 2408..2529 -
1680791141.9731321-CDS-D-mesarthrocarpus_Contig9914:3626..38021680791141.9731321-CDS-D-mesarthrocarpus_Contig9914:3626..3802Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9914 3627..3802 -
1680791141.984644-CDS-D-mesarthrocarpus_Contig9914:4290..44331680791141.984644-CDS-D-mesarthrocarpus_Contig9914:4290..4433Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9914 4291..4433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9914.1.1prot_D-mesarthrocarpus_Contig9914.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9914 6..4433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9914.1.1

>prot_D-mesarthrocarpus_Contig9914.1.1 ID=prot_D-mesarthrocarpus_Contig9914.1.1|Name=mRNA_D-mesarthrocarpus_Contig9914.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=272bp
RGAGITITPYAAGRIIGAAVWRVCWQTDDNDIVYATAYNHKTERRVFVHL
GPCALGSLSRPSVLITDAHNALTEVKSRKSREARLLAVVMDTIRGGGNVL
LPTDTAGRVLELLVLLDGHWKKNKLGSYRLVLLHNTAFNTAEYAKSQLEW
MSNEISRDFDLQRSNPFQLHNVHIIHSLEELDELGKDPKVVLATDMSLDY
GFSKALLLRWAPNPINAILLTGRGHGDTTARHLLAQLEGGGGVGDRGGGG
GGGRGRVAGGGGGWGGGGGGRG
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mRNA from alignment at D-mesarthrocarpus_Contig9914:6..4433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9914.1.1 ID=mRNA_D-mesarthrocarpus_Contig9914.1.1|Name=mRNA_D-mesarthrocarpus_Contig9914.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4428bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9914:6..4433- (Discosporangium mesarthrocarpum MT17_79)
CGGGGCGCAGGAATCACCATCACTCCGTATGCGGCGGGGCGGATCATTGG GGCGGCGGTTTGGCGGGTATGCTGGCAGACTGATGACAATGACATCGTCT ATGCCACTGCCTACAACCACAAGACAGAGAGGCGTGTATTTGTGTTTTGT GTGTGTTGTACATGCGGTTTTTAGTGTTTGTTTAGTCGTGGATACGCTCC CGGTTTAGGTTGGGGTTGGGTTAGAGTTAGGTGTTGGGGGTGGGCTTTCT TGGCTTGCCTTTTGCTTTTTTTTGTTGTCTTTTGATTGGACTGGTTTTTG GCTTGGCGGGCTAGCTCCTTCAGAATGCTAGAAAAAGCAAAGTTCCCTGT CCATGCATAGTTCTTGTCCTTCCCCAACACACGCCACACAAACATTCATT GCAAGCTGATTTAATTTGTTAGGGTTAAGGGTGAATCCATGACGCTTTCA CACCCAGCGCTGATTCCCCTTCCCCCCCCTTTCCACACTCATCATATCTT TGTATGCCCCTTTTCAAGACCTAGTTTGTGTTGTTCGCTTGTTGTTTGTT GTTGGTTATTCTTGTTCTTGTTGCTGATGCTGTTGCTGTTGCTGCTGCCC TGTTGTTGTTGCTGCTGCTGCTGTTCTCCAGGCACCTGGGACCCTGCGCT CTCGGCAGCCTCAGCCGTCCCAGTGTGCTCATCACTGACGCCCACAATGC CCTCACAGAGGTCAAGAGTCGCAAGTCCAGGGAGGCGAGGCTGTTGGCTG TGGTTATGGACACAATAAGGGGTGGGGGGAATGTCCTCTTGCCCACTGAC ACCGCAGGTTATCACCCATCCACACATCCCTCCTTTTTTTCCTGGAATAC TGTAGCGCGGAGAAGTTTGGGGAGATGGCCGCTGGGGGTATAGGGAGTCT CTGGTGTTCCCAGGAGTCCTTTGGGTTTTGCCAGAAGAAGGGGGCGATTC CAGAAGAAAGGGTGCTGTGTTGACAGGTGCCAGGGGTGTCTGAGGCTACA CTAGGGCTCGACTGCACTGGGTCCTTTCAACCTACGCTTGTTCTTGTGAG GGGGGGGGGGGTAGTATCAAAAATGGATTGGGGGGTTGGAGCTCACTGTT GGGGAGGGACATCTGCTGTGTTTTTTTCTTGCACGGGGGTTGGGGCTGGC TGACCTGACGGTTTCGGGATTGCGGAGTTGTGCCCCTACTAGGGATTGGC AGGAGCACAAGGGTGGCATGAAGAAAGTGCCTCAGTGCTCGGGTGATTTT TTGCTGTGCTTTTGAAGCATTGTTTTTTTTTTTCAAATATTCCGAATCTG ATCTAAGTACGTGTGCCTGCATCTATGTCTATGCATCTTACGCCTCCTTC CCCTTTTTGCATGTAAGTGGCGCTGCACACTTTGGAGGCAGGGGTTAATT TCTCCACAGCGTCCGTACTTTTTAGCCACAAGGTCGATGGTTGAGATTTT TTTGTTTTGTGGTATGGTTTGCTGGTGGGATAATAGCGCGGGGGCAGCCG TGAGAGGCAGCCAACGAAAAATTGAAACAGGAAGCAGGCACCTCGATACA TGTGATGAGAGCACCCTTTGCCCTGGAGGCAGGGACAGAGGATTCGCACC CATGGAACTTCGAAGCACGTGATGAGAGCGCTCCTTACCCTGGGAACGGG GGTGTGTTTCAAAGTCAAGTAATTCCAGGCACAGCACAGGAAGAGGGCGC CCTTGCCCTGGGGACAGGGATGGACATTAACACAGAGTGCTTTGAGGCAC AGCGCGTGCGTGATGAGAGCGCATTTTGCCCTGGGGAGAGGGCGATCAAG CTAAGCCCGGGTTGAGTCAAGTCCCACCCTGTCCCCCTCTACCCTGCTCT TGTTCACTCAAGATGTCACTGGATGACCTTTTTTTCCTCCCACCGCCACC ACAGGCCGTGTGCTTGAGCTGCTCGTTTTGCTGGACGGCCACTGGAAAAA GAATAAGCTTGGGAGCTACCGGCTGGTCCTCCTGCACAACACTGCCTTCA ACACGGCAGAGTACGCCAAGAGCCAGGTGAGGAGGAGGAGGAGGAGGAGG ATGGGGCTCTGAAATGACAAGCCCCTAACACCCCGACCCTATCTCTTGAC CAGAACTGGCTCTCACACCCTACTTCATTCTCATCACTTCACAGTCTGTC TGCCGGAGCCTGCTGTGATCATGAAAAGCGTTCCCAAAGTAGTTTGTGAA GCACTCCTCAGTACAGTATCAGCCCTGTGGATGGGTACCTGCATGAAGCA GGTTATTATATTTATTACGAAGTATTTATTATTTTTATTATTTCGAAGAA TTTTCTAGACGGAGAGGTGCCCTGCCACAGTTGCTTTATGTTCCTATAAA AGTGTTTAGTGTGTTGTGTTGTGTTGTGTGTGCTTTAGTGTTGCTACTTT CAGAGGCACCCTTCATCCTTCTCTGCCTGCCTCCCTCGGCATCTCCCCCC CCCCCCCCCCTGCAGCTGGAATGGATGAGCAATGAGATCAGCAGGGACTT TGACCTCCAAAGGAGCAACCCCTTCCAGCTGCACAACGTACACATCATAC ACAGCCTGGAGGAGCTTGACGAGCTGGGCAAAGACCCCAAGGTGTGGGAG TTGGGTTGGGGCTAGGGCTAGGGCTAGGATTAGGGCTAGGGCGGGGTTTC AAGGCAGGGCTGAGCCTGGGGTTTGTCATTGACAGTCTGCTGCAGGGTCG ACATTAGGGTTAGGGATAGGGCAGGGGGGGGGGCAGTGCTGAAGACAACT GTCCCTCCCAGCCTGGGCAGGGGGTATTGGACACGCCCATACTGAGCATC CTATGGTAACAAAGACCTGGCTGAGAGGACGCTCGGCTCCTCCTACCTCC CTCCCCTGGAGCACAGCCCCCTTCCCTTGAGGCAGGGGAATGAAGGGGGG GAGAGCAATACCATCGCATCCCCAAGCCCCAGGGGAGATGGCCTATGGCC AGGTCTTCACTGTTGGATGGACGGGTTTGGTACACCAGGGAAGGCGTCCT ATCCCCTACACGCCCAGGCTGAGGGAAGGGGACATTTGCCTCCAGCATGG ACTGACTGCCCCCCCCCATGCCGCAGGGAAGGGAGGCAACAACATCAGGG GAGAGGGGGGGGGGGTGAGCGACCTCGGCCAGAGTTTATGTCGGAGCCTC AACCATCAGATGACTGGTCCGGTGGACCAGGATGAAGGGTTGGGGGGTTA CGGATACTGGGTTGGGGTTGGGGTTGGGGTTGGGGTTGAGCCTGGAAACT ACCTTGAGGGTGGGGGAGGGCTTGAAGTCACCACCCACTGCACCCCACCA CTATATATGGCCCTGTGCCCCAACAACACCACTATCCTTTTGTTTGTACA AACCCCTCGGTGCTGCAACGGTCTGTGGGTGTGCTGGGGCAGGTTCTCAC CCGCATGCAAACCTCTTCCCCTGCGTTTCTCTGCATGTGAGGTTACTTTT GACTTGACGAAAGATCTTTCAACTAACACAGCAGCTCCACAGTTTGAGAG CTCTTATGCCATGTATATATATTTTTTTTCACAAGGGGTACTGTTTACAA ACCGAACCTCGCCCCACTTTTCCTCTACAGTGGGAATGATTGTTAAGTAC TTCGCGTTATTAGTGTCATTACTATCGATATTACTATTATCATTATAATT ATTTTTACTGTCATTATCATTATCACCGGTATCTTTCTCACCATCATTAT CAGCACTAGCATTATCAGCATGAGTATTATCAGCCTTGGCATCGTCAGCC TTGGCATTATCAGCCTTGGCATTATGATTACTACTATGAAGTGCATTGCG TAGCTGCCTTAATGCCCGCGAAGTAACCGCAGAGCATGCTAGCAACAAAA CAGTATCGCTTCAAGAGGGGCACCCATGGGAATACTGATTCTTTTGAAAT CTCCATTCCGTGTCCAAAACAATAGGGTTGCTGAATGCTGCGCCTCAATA ATTTCTCAAGTCCTCCAGTAGGAGCTGTGCCTTCCTAATCCTAATGCCCA ACCCATCAGGTGCACTCCCTTCCCCTCCCCTCCCCTCCCCTCCCCTCCTG CCCGCCACACTTTTTTCCTGCTCTGAAACCTGGAGGCATTTCTTGCCAGG GGCTCAGAGCCATGACCCTATAGCCCTTTTCCTAACCCAGATCCAAACCC TAACCCTAAACCTGATCCTAATCCTAAAGGTGGTTCTTGCAACTGACATG TCTCTGGACTACGGCTTCTCCAAAGCCCTTCTCCTACGGTGGGCCCCCAA CCCAATCAATGCCATCCTGCTCACTGGGAGGGGCCATGGTGACACCACTG CGAGACACCTGCTGGCGCAGCTAGAGGGTGGGGGCGGGGTGGGAGACCGG GGGGGGGGAGGGGGGGGGGGCAGGGGAAGGGTGGCAGGTGGGGGGGGGGG CTGGGGCGGGGGGGGGGGGGGGAGGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9914:6..4433-

>mRNA_D-mesarthrocarpus_Contig9914.1.1 ID=mRNA_D-mesarthrocarpus_Contig9914.1.1|Name=mRNA_D-mesarthrocarpus_Contig9914.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=816bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9914:6..4433- (Discosporangium mesarthrocarpum MT17_79)
CGGGGCGCAGGAATCACCATCACTCCGTATGCGGCGGGGCGGATCATTGG
GGCGGCGGTTTGGCGGGTATGCTGGCAGACTGATGACAATGACATCGTCT
ATGCCACTGCCTACAACCACAAGACAGAGAGGCGTGTATTTGTGCACCTG
GGACCCTGCGCTCTCGGCAGCCTCAGCCGTCCCAGTGTGCTCATCACTGA
CGCCCACAATGCCCTCACAGAGGTCAAGAGTCGCAAGTCCAGGGAGGCGA
GGCTGTTGGCTGTGGTTATGGACACAATAAGGGGTGGGGGGAATGTCCTC
TTGCCCACTGACACCGCAGGCCGTGTGCTTGAGCTGCTCGTTTTGCTGGA
CGGCCACTGGAAAAAGAATAAGCTTGGGAGCTACCGGCTGGTCCTCCTGC
ACAACACTGCCTTCAACACGGCAGAGTACGCCAAGAGCCAGCTGGAATGG
ATGAGCAATGAGATCAGCAGGGACTTTGACCTCCAAAGGAGCAACCCCTT
CCAGCTGCACAACGTACACATCATACACAGCCTGGAGGAGCTTGACGAGC
TGGGCAAAGACCCCAAGGTGGTTCTTGCAACTGACATGTCTCTGGACTAC
GGCTTCTCCAAAGCCCTTCTCCTACGGTGGGCCCCCAACCCAATCAATGC
CATCCTGCTCACTGGGAGGGGCCATGGTGACACCACTGCGAGACACCTGC
TGGCGCAGCTAGAGGGTGGGGGCGGGGTGGGAGACCGGGGGGGGGGAGGG
GGGGGGGGCAGGGGAAGGGTGGCAGGTGGGGGGGGGGGCTGGGGCGGGGG
GGGGGGGGGGAGGGGG
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