mRNA_D-mesarthrocarpus_Contig9909.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9909.1.1 vs. uniprot
Match: A0A6H5L0M9_9PHAE (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M9_9PHAE) HSP 1 Score: 49.7 bits (117), Expect = 7.040e-6 Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 1 Query: 1 QVFLERAKELADRLLPAFDSHTGVPYKMAS 90
+VFLERAK+LADRLLPAF + TG+PYK+ +
Sbjct: 404 EVFLERAKDLADRLLPAFGTSTGIPYKLVN 433
BLAST of mRNA_D-mesarthrocarpus_Contig9909.1.1 vs. uniprot
Match: D7FS40_ECTSI (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS40_ECTSI) HSP 1 Score: 48.9 bits (115), Expect = 1.320e-5 Identity = 20/30 (66.67%), Postives = 27/30 (90.00%), Query Frame = 1 Query: 1 QVFLERAKELADRLLPAFDSHTGVPYKMAS 90
+VFLERAK+LADRL+PAF + TG+PYK+ +
Sbjct: 402 EVFLERAKDLADRLMPAFGTSTGIPYKLVN 431
BLAST of mRNA_D-mesarthrocarpus_Contig9909.1.1 vs. uniprot
Match: A0A200PYR4_9MAGN (Glycoside hydrolase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PYR4_9MAGN) HSP 1 Score: 46.6 bits (109), Expect = 2.310e-5 Identity = 18/25 (72.00%), Postives = 25/25 (100.00%), Query Frame = 1 Query: 4 VFLERAKELADRLLPAFDSHTGVPY 78
VFLE+AK++ADRLLPA+D+H+G+PY
Sbjct: 63 VFLEKAKDIADRLLPAWDTHSGIPY 87 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9909.1.1 >prot_D-mesarthrocarpus_Contig9909.1.1 ID=prot_D-mesarthrocarpus_Contig9909.1.1|Name=mRNA_D-mesarthrocarpus_Contig9909.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=35bp QVFLERAKELADRLLPAFDSHTGVPYKMASWLYPRback to top mRNA from alignment at D-mesarthrocarpus_Contig9909:274..378+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9909.1.1 ID=mRNA_D-mesarthrocarpus_Contig9909.1.1|Name=mRNA_D-mesarthrocarpus_Contig9909.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=105bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9909:274..378+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9909:274..378+ >mRNA_D-mesarthrocarpus_Contig9909.1.1 ID=mRNA_D-mesarthrocarpus_Contig9909.1.1|Name=mRNA_D-mesarthrocarpus_Contig9909.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=105bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9909:274..378+ (Discosporangium mesarthrocarpum MT17_79)back to top |