mRNA_D-mesarthrocarpus_Contig99.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig99.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig99.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig99.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig99contigD-mesarthrocarpus_Contig99:32026..33039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons2
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791140.267376-CDS-D-mesarthrocarpus_Contig99:32027..323341680791140.267376-CDS-D-mesarthrocarpus_Contig99:32027..32334Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig99 32028..32334 -
1680791140.2785356-CDS-D-mesarthrocarpus_Contig99:32926..330391680791140.2785356-CDS-D-mesarthrocarpus_Contig99:32926..33039Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig99 32927..33039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig99.3.1prot_D-mesarthrocarpus_Contig99.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig99 32028..33039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig99.3.1

>prot_D-mesarthrocarpus_Contig99.3.1 ID=prot_D-mesarthrocarpus_Contig99.3.1|Name=mRNA_D-mesarthrocarpus_Contig99.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=140bp
GQGRACTGLVGDPTCLPGQREAEPGMCDVQAMGLGIGRRGEEIEIPFVPL
SQERKVSFVRAIKAKTQGWAAPHRLPALQGVGIASVSAGGGHTAFLTMDG
RMFLCGEGAALAGADPVALEHSWTARLTGVGVGAAVEAGI
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mRNA from alignment at D-mesarthrocarpus_Contig99:32026..33039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig99.3.1 ID=mRNA_D-mesarthrocarpus_Contig99.3.1|Name=mRNA_D-mesarthrocarpus_Contig99.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1014bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig99:32026..33039- (Discosporangium mesarthrocarpum MT17_79)
GGCCAAGGGAGGGCTTGCACAGGGCTTGTGGGAGACCCCACATGCTTGCC
AGGCCAACGGGAAGCTGAACCTGGGATGTGTGATGTGCAGGCCATGGGAC
TTGGCATTGGAAGGTGAGGGTAGGAGTCCGTGCCAATGCCAGATATATTC
GTTGATGGAGCTGTAGGATTGGTGGCGGCTCATGGCAACATCCAGAGGGG
TGCAGGCTGTTGCCATTGGTAATTACTGTAATCGGCAATAATAGACGGGA
CTTTGTCTGTCGGGTGTAGAGACCTACACCATCTCCCTCAAGCAAAGAGC
CATGTTCTTTGATTATTGCTAAGCGCTCCATGCCCGCTGTCACCTCGTCA
TTCCTTGGTCACGCACTCCAAGAGTAGGCTGCCTTTGTTCCCAATTCTGT
TGCTAGGAAGGTAGATTGTTGAACAGAAAGAATCGCCAACGGACAGTTCC
CGAGTAAGGAACATCCACTGGAGATCCAAGAATGCTGGTCACGTGCCCTC
ACTTTGCTTATTCTTTTATCTTATTTATTTTATTCTTTGCTTTATTTTAT
TTCGTTTCATTTTATTTTCATCTTATGCTTCTTTTTTTTTTTTTTCGTTG
ATGTGGTCTGGGGCAAAAAAATGAACGCAGGCCTTGCAACGAACCCCAGA
GTCAATGACTTGCGGGGTAACCGGATACCTCTCTCTTTTTTTTCGCACCA
TGCAGGAGGGGAGAAGAGATTGAAATCCCATTTGTCCCCCTATCCCAAGA
GCGAAAAGTCAGCTTTGTGAGGGCTATCAAAGCCAAAACACAAGGCTGGG
CAGCACCCCATCGCCTGCCAGCCCTCCAGGGGGTTGGGATAGCTTCAGTT
TCTGCCGGAGGGGGACATACAGCCTTTCTCACAATGGATGGTAGGATGTT
CTTGTGCGGAGAGGGGGCAGCACTGGCAGGAGCAGATCCTGTGGCCCTCG
AACACTCTTGGACGGCCAGGTTGACCGGGGTTGGGGTTGGGGCTGCGGTT
GAGGCTGGGATTGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig99:32026..33039-

>mRNA_D-mesarthrocarpus_Contig99.3.1 ID=mRNA_D-mesarthrocarpus_Contig99.3.1|Name=mRNA_D-mesarthrocarpus_Contig99.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=420bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig99:32026..33039- (Discosporangium mesarthrocarpum MT17_79)
GGCCAAGGGAGGGCTTGCACAGGGCTTGTGGGAGACCCCACATGCTTGCC
AGGCCAACGGGAAGCTGAACCTGGGATGTGTGATGTGCAGGCCATGGGAC
TTGGCATTGGAAGGAGGGGAGAAGAGATTGAAATCCCATTTGTCCCCCTA
TCCCAAGAGCGAAAAGTCAGCTTTGTGAGGGCTATCAAAGCCAAAACACA
AGGCTGGGCAGCACCCCATCGCCTGCCAGCCCTCCAGGGGGTTGGGATAG
CTTCAGTTTCTGCCGGAGGGGGACATACAGCCTTTCTCACAATGGATGGT
AGGATGTTCTTGTGCGGAGAGGGGGCAGCACTGGCAGGAGCAGATCCTGT
GGCCCTCGAACACTCTTGGACGGCCAGGTTGACCGGGGTTGGGGTTGGGG
CTGCGGTTGAGGCTGGGATT
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