mRNA_D-mesarthrocarpus_Contig9894.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9894.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9894.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A835YM60_9STRA (Ferritin-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM60_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.410e-13
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSKSGVGV+KA+QAFT+EADF
Sbjct:  304 LQGKTNFFEKRVGEYSKSGVGVDKAEQAFTMEADF 338
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: D7FMW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMW5_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.070e-13
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSKSGVGV+ ADQ FTLEADF
Sbjct:  346 LQGKTNFFEKRVGEYSKSGVGVDAADQEFTLEADF 380
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A067BHL4_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BHL4_SAPPC)

HSP 1 Score: 66.2 bits (160), Expect = 8.450e-13
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSKSGVGV   DQ+FTL+ADF
Sbjct:  104 LQGKTNFFEKRVGEYSKSGVGVSAEDQSFTLDADF 138
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A835YM53_9STRA (Ferritin-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM53_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.490e-12
Identity = 32/35 (91.43%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSKSGVGVE  DQ FTLEADF
Sbjct:  338 LQGKTNFFEKRVGEYSKSGVGVEAQDQLFTLEADF 372
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A024TX12_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TX12_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.010e-12
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSKSGVGV  +DQ FTL+ADF
Sbjct:  314 LQGKTNFFEKRVGEYSKSGVGVSSSDQTFTLDADF 348
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A067BTZ1_SAPPC (Ribonucleoside-diphosphate reductase small subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BTZ1_SAPPC)

HSP 1 Score: 66.2 bits (160), Expect = 9.450e-12
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSKSGVGV   DQ+FTL+ADF
Sbjct:  313 LQGKTNFFEKRVGEYSKSGVGVSAEDQSFTLDADF 347
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A5D6XR10_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR10_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.040e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSK+GVGV  ADQ FTL+ADF
Sbjct:  363 LQGKTNFFEKRVGEYSKAGVGVAAADQVFTLDADF 397
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A7S0C8G5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8G5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.070e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSKSGVGV+ ADQ F L+ADF
Sbjct:  421 LQGKTNFFEKRVGEYSKSGVGVDAADQVFDLDADF 455
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A7S1CCR0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCR0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            L GKTNFFEKRVGEYSK+GVGVE AD  FTL+ADF
Sbjct:  188 LSGKTNFFEKRVGEYSKAGVGVEAADNTFTLDADF 222
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BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Match: A0A2D4BFI7_PYTIN (Ribonucleoside-diphosphate reductase small chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFI7_PYTIN)

HSP 1 Score: 65.1 bits (157), Expect = 1.560e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF 105
            LQGKTNFFEKRVGEYSK+GVGV  A+Q FTL+ADF
Sbjct:  228 LQGKTNFFEKRVGEYSKAGVGVSAAEQVFTLDADF 262
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YM60_9STRA1.410e-1391.43Ferritin-like superfamily n=1 Tax=Tribonema minus ... [more]
D7FMW5_ECTSI8.070e-1391.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067BHL4_SAPPC8.450e-1385.71Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A835YM53_9STRA1.490e-1291.43Ferritin-like superfamily n=1 Tax=Tribonema minus ... [more]
A0A024TX12_9STRA5.010e-1285.71Uncharacterized protein n=7 Tax=Aphanomyces TaxID=... [more]
A0A067BTZ1_SAPPC9.450e-1285.71Ribonucleoside-diphosphate reductase small subunit... [more]
A0A5D6XR10_9STRA1.040e-1185.71Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S0C8G5_9STRA1.070e-1185.71Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1CCR0_9STRA1.420e-1182.86Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2D4BFI7_PYTIN1.560e-1182.86Ribonucleoside-diphosphate reductase small chain n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9894contigD-mesarthrocarpus_Contig9894:2..109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FMW5
Preferred nameRNR2
PFAMsRibonuc_red_sm
Model size108
Max annot lvl2759|Eukaryota
KEGG rclassRC00613,RC01003
KEGG koko:K10808
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,ko04115,map00230,map00240,map00480,map00983,map01100,map04115
KEGG ModuleM00053
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004748,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009215,GO:0009216,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0032991,GO:0034641,GO:0034654,GO:0042278,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0051063,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072521,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
Exons1
Evalue1.32e-13
EggNOG OGsCOG1678@1|root,KOG1567@2759|Eukaryota
EC1.17.4.1
Descriptionribonucleoside-diphosphate reductase activity
Cds size108
COG categoryK
BiGG ReactioniMM904.YGR180C,iMM904.YJL026W,iND750.YGR180C,iND750.YJL026W
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791139.717203-CDS-D-mesarthrocarpus_Contig9894:1..1091680791139.717203-CDS-D-mesarthrocarpus_Contig9894:1..109Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9894 2..109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9894.1.1prot_D-mesarthrocarpus_Contig9894.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9894 2..109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9894.1.1

>prot_D-mesarthrocarpus_Contig9894.1.1 ID=prot_D-mesarthrocarpus_Contig9894.1.1|Name=mRNA_D-mesarthrocarpus_Contig9894.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=36bp
LQGKTNFFEKRVGEYSKSGVGVEKADQAFTLEADF*
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mRNA from alignment at D-mesarthrocarpus_Contig9894:2..109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9894.1.1 ID=mRNA_D-mesarthrocarpus_Contig9894.1.1|Name=mRNA_D-mesarthrocarpus_Contig9894.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=108bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9894:2..109+ (Discosporangium mesarthrocarpum MT17_79)
CTCCAGGGCAAGACCAACTTCTTCGAGAAGAGGGTGGGGGAGTACAGCAA
ATCTGGGGTCGGTGTGGAGAAGGCAGATCAGGCCTTCACCCTTGAGGCTG
ACTTCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9894:2..109+

>mRNA_D-mesarthrocarpus_Contig9894.1.1 ID=mRNA_D-mesarthrocarpus_Contig9894.1.1|Name=mRNA_D-mesarthrocarpus_Contig9894.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=108bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9894:2..109+ (Discosporangium mesarthrocarpum MT17_79)
CTCCAGGGCAAGACCAACTTCTTCGAGAAGAGGGTGGGGGAGTACAGCAA
ATCTGGGGTCGGTGTGGAGAAGGCAGATCAGGCCTTCACCCTTGAGGCTG
ACTTCTAG
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