mRNA_D-mesarthrocarpus_Contig9888.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9888.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9888.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9888.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9888contigD-mesarthrocarpus_Contig9888:543..1500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size436
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791139.1406152-UTR-D-mesarthrocarpus_Contig9888:542..7071680791139.1406152-UTR-D-mesarthrocarpus_Contig9888:542..707Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9888 543..707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791139.152274-CDS-D-mesarthrocarpus_Contig9888:707..7341680791139.152274-CDS-D-mesarthrocarpus_Contig9888:707..734Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9888 708..734 +
1680791139.1633334-CDS-D-mesarthrocarpus_Contig9888:1257..15001680791139.1633334-CDS-D-mesarthrocarpus_Contig9888:1257..1500Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9888 1258..1500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9888.1.1prot_D-mesarthrocarpus_Contig9888.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9888 708..1500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9888.1.1

>prot_D-mesarthrocarpus_Contig9888.1.1 ID=prot_D-mesarthrocarpus_Contig9888.1.1|Name=mRNA_D-mesarthrocarpus_Contig9888.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=90bp
MPFSPWRRKPVGSSSRSQVSATVVERPGNSPIDAPDVTAGQAPSDAGRID
TVEHDYQSLADLLEVDPDMPGPEHGNGLLKAIKNRSQQTR
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mRNA from alignment at D-mesarthrocarpus_Contig9888:543..1500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9888.1.1 ID=mRNA_D-mesarthrocarpus_Contig9888.1.1|Name=mRNA_D-mesarthrocarpus_Contig9888.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=958bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9888:543..1500+ (Discosporangium mesarthrocarpum MT17_79)
AACGACTTAACATGACAGGAGGAGGCTTGGTTGCTCAGTAAGGAAGCACG
CTCTTCATAGCTGTAGTTGGAAGGAAGAACATAGAGGTGGCGTTGAAATT
TGTTTACAGCCGTCGTGTGCCCGCTGTCCAGGTTGGAGGTGGGTTTATCT
ACAGGGGGGGGGAGGATGCCATTTTCTCCCTGGAGGCGGAAGGTGGGTAA
AAAGTGTGGTCGTTGTGCATCAATCCTCATTATAGCATACCCAAATTGTG
GATGAATTCGTTATTACACGGGATGTGTTGGCAACTCACACGCCCCTTGT
TTACCGGAACGGTATGTTTATCCGCCGCTTGGGTCGACCTGCTAGGAAGA
TCTAGACCTGCACCGATCCCTCTTACTGATGTGGTTCGATACATGCGAGA
TTAACGCTATCCGCCAACAACTTACTGTCTCGTCAGCGCCATTTGGAATC
TTCCCCTGCCACGAAATACTCCCCACGTCCCAGCGATGGACTTGCTCAAT
CTAAACTTCAAGCCTCAGTCACCCCACGGGCAATTCGGCTCTTCTGCATT
GTCGGAGTTAAGTCAACCGCTTTTTTTTTTCGATGCAGGAGCACGGTAGG
GTCGTCTTTCCAAAATCCCCAAGCGCCTTGTGGTCCCAAGGATACCTTAC
ACGCAGATTTTCAGCTCACAACCGTGCTCATTGCTCCTCCCCTGCGCAAA
CTCTGCCCTTCTCAGCCCGTAGGTTCCTCGTCGAGGTCGCAAGTTTCCGC
CACAGTGGTTGAGAGACCTGGCAACTCCCCTATTGATGCACCCGATGTTA
CCGCCGGTCAGGCGCCGAGCGATGCTGGAAGGATCGATACTGTGGAACAC
GACTACCAGTCGCTCGCCGACCTATTGGAGGTGGACCCGGACATGCCCGG
GCCCGAGCACGGGAACGGGCTTCTTAAGGCAATCAAAAATCGTTCGCAAC
AAACCAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9888:543..1500+

>mRNA_D-mesarthrocarpus_Contig9888.1.1 ID=mRNA_D-mesarthrocarpus_Contig9888.1.1|Name=mRNA_D-mesarthrocarpus_Contig9888.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9888:543..1500+ (Discosporangium mesarthrocarpum MT17_79)
ATGCCATTTTCTCCCTGGAGGCGGAAGCCCGTAGGTTCCTCGTCGAGGTC
GCAAGTTTCCGCCACAGTGGTTGAGAGACCTGGCAACTCCCCTATTGATG
CACCCGATGTTACCGCCGGTCAGGCGCCGAGCGATGCTGGAAGGATCGAT
ACTGTGGAACACGACTACCAGTCGCTCGCCGACCTATTGGAGGTGGACCC
GGACATGCCCGGGCCCGAGCACGGGAACGGGCTTCTTAAGGCAATCAAAA
ATCGTTCGCAACAAACCAGG
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