mRNA_D-mesarthrocarpus_Contig9884.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9884.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9884.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: A0A3R6WJ70_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WJ70_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.650e-13
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   74 GDSIILETPPVNSPDLIVNDLGSFHSIQQLK-EDVGVSSEDLVEATMEAFN----NESGRVFFFF-AVLGEVLGSKGDNSYKLPHLGKENLRRTGKL 346
            G + ++ + P NSPDL V DLG F SIQ L+ + V  + +D++EAT+ AF      +   VF  F AV+  V+   GDN ++LPHLGK+ LRR G L
Sbjct:   96 GWTFVVRSQPPNSPDLNVLDLGFFASIQSLQYKSVSRTVDDIIEATLSAFECLGVEKLENVFLTFQAVMRLVIQHSGDNQFRLPHLGKDALRRAGAL 192          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: UPI001C261F0C (uncharacterized protein LOC121776676 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C261F0C)

HSP 1 Score: 69.7 bits (169), Expect = 5.510e-12
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 2
Query:   47 DMGAIQAKAGDSIILETPPVNSPDLIVNDLGSFHSIQQLKEDVGVSS-EDLVEATMEAFNNESGRVF--FFFAVLG---EVLGSKGDNSYKLPHLGKENLRRTGKLP 349
            D  A   + G ++ L   P NSPD  VNDLG F +IQ L+      + +DLV+A  ++F + S       F ++ G   E++ ++G NSYKLPH+GKE LRR  +LP
Sbjct:  102 DFRAAANQNGFTMKLVQQPPNSPDTNVNDLGWFRAIQSLQLQTACKTLDDLVKAVEKSFEDLSAVTLDNVFLSLQGCMVEIMKARGHNSYKLPHMGKEALRRVAQLP 208          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 70.1 bits (170), Expect = 9.530e-12
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 2
Query:   65 AKAGDSIILETPPVNSPDLIVNDLGSFHSIQQLK-EDVGVSSEDLVEATMEAFNN----ESGRVFFFFAV-LGEVLGSKGDNSYKLPHLGKENLRRTGKLP 349
            +K G  I L   P NSPDL V DLG F SIQ L+ E    + E+LV A  ++F+     +  RVF      + E++  KGDN YK+PH+GK+ L R G LP
Sbjct:  240 SKDGFDIRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMGKDRLEREGTLP 340          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: UPI002009A106 (uncharacterized protein LOC125220207 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009A106)

HSP 1 Score: 68.9 bits (167), Expect = 1.240e-11
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 2
Query:   47 DMGAIQAKAGDSIILETPPVNSPDLIVNDLGSFHSIQQLKEDVGVSS-EDLVEATMEAFNN----ESGRVFFFF-AVLGEVLGSKGDNSYKLPHLGKENLRRTGKLP 349
            D  A   + G +I L   P NSPD  VNDLG F +IQ L+     ++ +DLV+A  ++F++        VF    + + E++  KG N YK+PH+GK +LRR+G+LP
Sbjct:  102 DFRAAATQNGFNIQLVQQPPNSPDTDVNDLGWFRAIQSLQLQTACNTIDDLVKAVEKSFHDLCPVTLDNVFLSLQSCMLEIMRLKGQNCYKIPHMGKASLRRSGQLP 208          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: UPI001C2659A6 (uncharacterized protein LOC121754350 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2659A6)

HSP 1 Score: 68.2 bits (165), Expect = 5.320e-11
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 2
Query:   47 DMGAIQAKAGDSIILETPPVNSPDLIVNDLGSFHSIQQLKEDVGVSS-EDLVEATMEAFNNESGR----VFFFF-AVLGEVLGSKGDNSYKLPHLGKENLRRTGKLP 349
            D      + G S+ L   P  SPD  VNDLG F +IQ L+      + +DL++A  ++F++ S +    VF    + + E+L  KG NSYK+PHLGK NLRR  +LP
Sbjct:  302 DFKVAAQQHGFSMSLVQQPPCSPDTNVNDLGWFRAIQSLQVQTACKTIDDLIKAVEKSFHDLSPQTLDNVFLSLQSCMVEILKVKGQNSYKVPHLGKNNLRRNAQLP 408          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: A0A024UEL1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEL1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.370e-10
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 2
Query:   74 GDSIILETPPVNSPDLIVNDLGSFHSIQQLKED-VGVSSEDLVEATMEAFNNESGR----VFFFF-AVLGEVLGSKGDNSYKLPHLGKENLRRTGKL 346
            G S ++   P NSPDL V DLG F S+Q L+   V  S +D++ AT+ AF    G     VF    AV+  +L + G N+++LPHL K++LRR G L
Sbjct:  149 GWSFVVRCQPPNSPDLNVLDLGFFSSLQTLQHKLVSRSLDDVIHATLAAFELSGGHTLANVFLTLQAVMRVMLENNGGNTFRLPHLRKDSLRRVGAL 245          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: A0A484LB41_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LB41_9ASTE)

HSP 1 Score: 65.1 bits (157), Expect = 2.850e-10
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 2
Query:   74 GDSIILETPPVNSPDLIVNDLGSFHSIQQLKEDVGVSS-EDLVEATMEAFNN-ESGRVFFFFAVL----GEVLGSKGDNSYKLPHLGKENLRRTGKLP 349
            G  I L   P NSPDL V DLG F +IQ L++D    + +DLV    +++N  E  R  F +  L    GEV+   G N+YK+PH+GK +L R+G LP
Sbjct:  109 GFDISLTFQPPNSPDLNVLDLGYFRAIQSLQQDHKCKTIDDLVHVVTKSYNEFEPMRSNFVWLSLQYCMGEVIKKLGCNAYKIPHVGKYSLLRSGNLP 206          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: A0A6A4Z322_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z322_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.500e-10
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 2
Query:   47 DMGAIQAKAGD--SIILETPPVNSPDLIVNDLGSFHSIQQLKEDVGVSS-EDLVEATMEAFNNESG----RVFFFF-AVLGEVLGSKGDNSYKLPHLGKENLRRTGKLP 349
            D   + A   D  S+ L+  P NSPDL V DLG F +IQ L++    ++ +++V+AT +A+++       R F      L EV+ + GDNSYK+PH+ KE L+++GKLP
Sbjct:  318 DAAVVSACTSDGWSMSLKCQPPNSPDLNVLDLGFFRAIQSLQQTHHSNTYQEIVDATNKAWDDVDPWSLERNFLTLQCCLREVIMAAGDNSYKVPHMKKEALKKSGKLP 426          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: A0A225WZV1_9STRA (Mar9 Transposase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZV1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.980e-10
Identity = 44/109 (40.37%), Postives = 61/109 (55.96%), Query Frame = 2
Query:   41 GGDMGAIQAKAGDSIILETPPVNSPDLIVNDLGSFHSIQQLKEDVGV-SSEDLVEATMEAFNNESGR----VFFFFA-VLGEVLGSKGDNSYKLPHLGKENLRRTGKLP 349
            G D  A     G +I +   P N PD  V DLG F SIQ ++ +  + S+E L+ A ++A+N  S      VF     V+  +L SKG N+Y LPH+GK+ LRR G+LP
Sbjct:  256 GPDDAAAGTADGWNICMFPQPANLPDGNVLDLGFFTSIQNIQIERPIYSTEALITAVIDAYNRLSSATLDDVFLSLQNVMICILQSKGGNAYMLPHMGKQKLRREGRLP 364          
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Match: UPI0020091A08 (uncharacterized protein LOC125206097 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020091A08)

HSP 1 Score: 64.7 bits (156), Expect = 8.800e-10
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 2
Query:   56 AIQAKAGDSIILETPPVNSPDLIVNDLGSFHSIQQLKEDVGVSSED-LVEATMEAFNNES----GRVFFFF-AVLGEVLGSKGDNSYKLPHLGKENLRRTGKLP 349
            AI    G  I L   P NSPD  + DLG F +IQ L+      + D LVE   +A+   +     RVF    A L ++L  +GDNSYK+PH+ K+ L RTG LP
Sbjct:  311 AIANSDGFKIHLICQPPNSPDTNILDLGFFRAIQSLQHQKPCRNVDELVENVCKAYEELTPQTLNRVFLSLQACLTQILQFRGDNSYKVPHMNKDRLERTGGLP 414          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9884.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R6WJ70_9STRA5.650e-1344.33Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
UPI001C261F0C5.510e-1240.19uncharacterized protein LOC121776676 n=1 Tax=Salvi... [more]
UPI0007F012D19.530e-1243.56uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]
UPI002009A1061.240e-1139.25uncharacterized protein LOC125220207 n=1 Tax=Salvi... [more]
UPI001C2659A65.320e-1140.19uncharacterized protein LOC121754350 n=3 Tax=Salvi... [more]
A0A024UEL1_9STRA2.370e-1042.27Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A484LB41_9ASTE2.850e-1042.86Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A6A4Z322_9STRA3.500e-1039.45Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A225WZV1_9STRA7.980e-1040.37Mar9 Transposase n=1 Tax=Phytophthora megakarya Ta... [more]
UPI0020091A088.800e-1041.35uncharacterized protein LOC125206097 n=1 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9884contigD-mesarthrocarpus_Contig9884:4262..4631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog161934.XP_010672225.1
PFAMsHTH_Tnp_Tc3_2
Model size349
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.95e-11
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791139.0761497-CDS-D-mesarthrocarpus_Contig9884:4261..43871680791139.0761497-CDS-D-mesarthrocarpus_Contig9884:4261..4387Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9884 4262..4387 -
1680791139.0900617-CDS-D-mesarthrocarpus_Contig9884:4408..46151680791139.0900617-CDS-D-mesarthrocarpus_Contig9884:4408..4615Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9884 4409..4615 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791139.1059232-UTR-D-mesarthrocarpus_Contig9884:4615..46311680791139.1059232-UTR-D-mesarthrocarpus_Contig9884:4615..4631Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9884 4616..4631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9884.3.1prot_D-mesarthrocarpus_Contig9884.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9884 4262..4615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9884.3.1

>prot_D-mesarthrocarpus_Contig9884.3.1 ID=prot_D-mesarthrocarpus_Contig9884.3.1|Name=mRNA_D-mesarthrocarpus_Contig9884.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
MVQSRTRGGGDMGAIQAKAGDSIILETPPVNSPDLIVNDLGSFHSIQQLK
EDVGVSSEDLVEATMEAFNNESGRVFFFFAVLGEVLGSKGDNSYKLPHLG
KENLRRTGKLP
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mRNA from alignment at D-mesarthrocarpus_Contig9884:4262..4631-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9884.3.1 ID=mRNA_D-mesarthrocarpus_Contig9884.3.1|Name=mRNA_D-mesarthrocarpus_Contig9884.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=370bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9884:4262..4631- (Discosporangium mesarthrocarpum MT17_79)
GTCTTAGTGCACCAGGATGGTGCAAAGCCGCACACGGGGGGGGGGGGACA TGGGGGCAATTCAGGCCAAGGCGGGGGACAGCATCATCCTGGAAACCCCG CCTGTCAACTCACCTGACCTCATCGTGAATGATCTTGGTTCCTTCCACTC TATCCAGCAGCTGAAGGAGGATGTGGGAGTGTCTTCTGAGGACCTGGTGG AGGCCACAATGGAGGCCTTCAATGTCTACCCCAGGAGACACTAGAACGAG TCTGGCAGAGTTTTTTTTTTTTTCGCAGTCCTTGGGGAAGTCCTTGGCTC TAAGGGTGATAATAGCTACAAGTTGCCCCATTTGGGCAAGGAGAATCTTC GTAGGACAGGCAAACTTCCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9884:4262..4631-

>mRNA_D-mesarthrocarpus_Contig9884.3.1 ID=mRNA_D-mesarthrocarpus_Contig9884.3.1|Name=mRNA_D-mesarthrocarpus_Contig9884.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9884:4262..4631- (Discosporangium mesarthrocarpum MT17_79)
ATGGTGCAAAGCCGCACACGGGGGGGGGGGGACATGGGGGCAATTCAGGC
CAAGGCGGGGGACAGCATCATCCTGGAAACCCCGCCTGTCAACTCACCTG
ACCTCATCGTGAATGATCTTGGTTCCTTCCACTCTATCCAGCAGCTGAAG
GAGGATGTGGGAGTGTCTTCTGAGGACCTGGTGGAGGCCACAATGGAGGC
CTTCAATAACGAGTCTGGCAGAGTTTTTTTTTTTTTCGCAGTCCTTGGGG
AAGTCCTTGGCTCTAAGGGTGATAATAGCTACAAGTTGCCCCATTTGGGC
AAGGAGAATCTTCGTAGGACAGGCAAACTTCCG
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