mRNA_D-mesarthrocarpus_Contig9881.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9881.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9881.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: A0A6A6LRC4_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LRC4_HEVBR)

HSP 1 Score: 57.4 bits (137), Expect = 2.920e-8
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCKHVGVL 186
            P    RT+HI++ HHFI  LIAKE   + +  +  Q+ADILTKAL KE FC   G L
Sbjct:  148 PTFHSRTKHIELRHHFICDLIAKEEIILKYCSTNEQLADILTKALSKEKFCYFRGFL 204          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: A0A6A6MUB3_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MUB3_HEVBR)

HSP 1 Score: 55.8 bits (133), Expect = 1.050e-7
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCKHVGVL 186
            P    RT+HI++ H+FI  L+AKE   + +  +  Q+ADILTKAL KE FC   G+L
Sbjct:  143 PTFHSRTKHIELRHYFIRDLVAKEEIALKYRSTNEQLADILTKALSKEKFCYFRGLL 199          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: A0A6P5ZF73_DURZI (fructose-1,6-bisphosphatase 1-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZF73_DURZI)

HSP 1 Score: 53.9 bits (128), Expect = 1.900e-7
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENF 165
            P   GRT+HIK+ +HFI  + A+    + H  SE+Q+ADILTK LPK  F
Sbjct:    5 PVFHGRTKHIKIKYHFIREVEAENEVKLVHCKSEDQIADILTKVLPKARF 54          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.600e-7
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCKHVGVLLSVR 198
            P SS R++HI V HHF+  L  +    + HV SE Q ADILTKALP++ F  H   +L  R
Sbjct:  268 PLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFVLGSR 328          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 7.060e-7
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCKHVGVLLSVR 198
            P SS R++HI V HHF+  L  +    + HV SE Q ADILTKALP++ F  H   +L  R
Sbjct:  434 PLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFVLGSR 494          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: UPI001FB13EC0 (cucumisin-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB13EC0)

HSP 1 Score: 53.9 bits (128), Expect = 9.650e-7
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCKHVGVL 186
            P    RT+HI++  HFI   + K +    +V+S NQVADILTKALPK NF +  G L
Sbjct:  149 PIHRARTKHIEIDRHFISENVNKGSIAPLYVISRNQVADILTKALPKPNFEELCGNL 205          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: B0ZBI7_MAIZE (Opie2a pol protein (Fragment) n=2 Tax=Zea mays TaxID=4577 RepID=B0ZBI7_MAIZE)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCK 171
            P    RT+HI + HHF+     K +  +FHV SEN +ADI TK L ++ FCK
Sbjct:  626 PVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSSENHLADIFTKPLDEQTFCK 677          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.330e-6
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCKHVGVLLSVR 198
            P SS R++HI V HHF+  L  +    + HV SE Q ADILTKALP++ F  H    L  R
Sbjct: 1166 PLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALGSR 1226          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: A0A5N6Q4E8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4E8_9ASTR)

HSP 1 Score: 52.8 bits (125), Expect = 2.420e-6
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   16 PPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCKHVGVL 186
            P   GR++HI   +HFI   I KE   + HV  E+QVADILTKALPK  F +  G L
Sbjct:  404 PVFHGRSKHIDTRYHFIRECIEKELIVVEHVCGEDQVADILTKALPKLKFEEMKGKL 460          
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Match: A0A4Y2D8D4_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2D8D4_ARAVE)

HSP 1 Score: 52.8 bits (125), Expect = 2.440e-6
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   28 GRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKALPKENFCKHV 177
            GR +HI +   FI  ++++    I H+ + NQ+AD+LTKALPK  FC+H+
Sbjct:  518 GRMKHIDIKLKFIRDIVSRNKIKIEHISTANQIADMLTKALPKTKFCEHL 567          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9881.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6LRC4_HEVBR2.920e-850.88Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
A0A6A6MUB3_HEVBR1.050e-747.37Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
A0A6P5ZF73_DURZI1.900e-750.00fructose-1,6-bisphosphatase 1-like n=1 Tax=Durio z... [more]
A0A6H5KBM6_9PHAE6.600e-747.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE7.060e-747.54Integrase catalytic domain-containing protein n=1 ... [more]
UPI001FB13EC09.650e-749.12cucumisin-like n=1 Tax=Impatiens glandulifera TaxI... [more]
B0ZBI7_MAIZE1.310e-646.15Opie2a pol protein (Fragment) n=2 Tax=Zea mays Tax... [more]
A0A6H5JRL9_9PHAE1.330e-647.54Integrase catalytic domain-containing protein n=2 ... [more]
A0A5N6Q4E8_9ASTR2.420e-650.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y2D8D4_ARAVE2.440e-644.00Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9881contigD-mesarthrocarpus_Contig9881:269..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4572.TRIUR3_33056-P1
Model size204
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.15e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38A15@33090|Viridiplantae,3GXBG@35493|Streptophyta
Descriptiontransposition, RNA-mediated
Cds size204
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791138.90079-CDS-D-mesarthrocarpus_Contig9881:268..4721680791138.90079-CDS-D-mesarthrocarpus_Contig9881:268..472Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9881 269..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9881.1.1prot_D-mesarthrocarpus_Contig9881.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9881 269..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9881.1.1

>prot_D-mesarthrocarpus_Contig9881.1.1 ID=prot_D-mesarthrocarpus_Contig9881.1.1|Name=mRNA_D-mesarthrocarpus_Contig9881.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=68bp
KPCSEPPSSGRTEHIKVCHHFILGLIAKENTGIFHVVSENQVADILTKAL
PKENFCKHVGVLLSVRP*
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mRNA from alignment at D-mesarthrocarpus_Contig9881:269..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9881.1.1 ID=mRNA_D-mesarthrocarpus_Contig9881.1.1|Name=mRNA_D-mesarthrocarpus_Contig9881.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=204bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9881:269..472+ (Discosporangium mesarthrocarpum MT17_79)
AAACCTTGCTCAGAACCCCCGAGTTCTGGGAGGACAGAGCATATCAAGGT CTGTCATCATTTCATTCTGGGCTTGATAGCCAAGGAAAATACTGGGATAT TTCATGTGGTCTCCGAGAATCAGGTTGCAGACATTTTGACCAAAGCTTTG CCCAAAGAGAATTTTTGCAAGCATGTAGGTGTTCTTTTGAGTGTGCGGCC CTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9881:269..472+

>mRNA_D-mesarthrocarpus_Contig9881.1.1 ID=mRNA_D-mesarthrocarpus_Contig9881.1.1|Name=mRNA_D-mesarthrocarpus_Contig9881.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=204bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9881:269..472+ (Discosporangium mesarthrocarpum MT17_79)
AAACCTTGCTCAGAACCCCCGAGTTCTGGGAGGACAGAGCATATCAAGGT
CTGTCATCATTTCATTCTGGGCTTGATAGCCAAGGAAAATACTGGGATAT
TTCATGTGGTCTCCGAGAATCAGGTTGCAGACATTTTGACCAAAGCTTTG
CCCAAAGAGAATTTTTGCAAGCATGTAGGTGTTCTTTTGAGTGTGCGGCC
CTAG
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