mRNA_D-mesarthrocarpus_Contig988.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig988.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig988.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig988.2.1 vs. uniprot
Match: A0A7S4D838_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D838_HETAK)

HSP 1 Score: 111 bits (278), Expect = 4.880e-27
Identity = 61/101 (60.40%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 RHFRLAARMTGKIYLPHRDSNSGDITCKGTSDNIVIPVNSFRSVMDSALRLARSFDDGLSECGLICPPGVLALDSGNDPFYGVPGVHPVKKPARPSTKFPC 303
            RHFR AARM GKIYLP+R  N   I+CKG+SD I I  N FR VMD ALRLAR+F  GLSECGL C P +LALD    P Y  PG   VK P +P  +FPC
Sbjct:  247 RHFRNAARMNGKIYLPYRVVND-KISCKGSSDAITINANDFRKVMDGALRLARNFHGGLSECGLWCDPNILALDKNLIPLYK-PGDGQVKNPKKP--RFPC 343
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BLAST of mRNA_D-mesarthrocarpus_Contig988.2.1 vs. uniprot
Match: A0A7S3GV16_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV16_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.550e-26
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 RHFRLAARMTGKIYLPHRDSNSGDITCKGTSDNIVIPVNSFRSVMDSALRLARSFDDGLSECGLICPPGVLALDSGNDPFYGVPGVHPVKKPARPSTKFPC 303
            RHFR AARMTGKIY+P R +     TC G+SD + +P+  F   +D A+R+ARSFDDGLSECGL+CPP +LALD   D +Y        +K    +T+FPC
Sbjct:  141 RHFRHAARMTGKIYMPIRSTRRE--TCVGSSDTVTVPIEEFERTVDGAVRIARSFDDGLSECGLVCPPAILALDGRLDRYY----KSHERKSTPINTRFPC 235
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BLAST of mRNA_D-mesarthrocarpus_Contig988.2.1 vs. uniprot
Match: A0A7S0SZ26_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ26_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.210e-26
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 RHFRLAARMTGKIYLPHRDSNSGDITCKGTSDNIVIPVNSFRSVMDSALRLARSFDDGLSECGLICPPGVLALDSGNDPFYGVPGVHPVKKPARPSTKFPC 303
            RHFR AARMTGKIY+P R       TC+G+SDN+VIPV  F+  +D A+R+ARSFDDGLSECGL CP  +LALD+   PFYG    +  KK +  +T FPC
Sbjct:  382 RHFRHAARMTGKIYMPLRTLTRE--TCQGSSDNVVIPVQEFKQTVDGAIRIARSFDDGLSECGLNCPYEILALDNKLLPFYG----NKDKKVSPVNTAFPC 476
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BLAST of mRNA_D-mesarthrocarpus_Contig988.2.1 vs. uniprot
Match: A0A8J2SL80_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL80_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.490e-25
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 RHFRLAARMTGKIYLPHRDSNSGDITCKGTSDNIVIPVNSFRSVMDSALRLARSFDDGLSECGLICPPGVLALDSGNDPFYGVPGVHPVKKPARPSTKFPC 303
            RHFRLAARM GKIYLP R +    +TCKGTSD + +    FR  +D+A+RLARSFDDG++ECGL C   VLALDSGN  F   PG  P+      +T+FPC
Sbjct:  511 RHFRLAARMAGKIYLPLRSTQP--VTCKGTSDAVPVDAGEFRRALDAAVRLARSFDDGVAECGLSCDARVLALDSGNAKFLP-PGARPL------ATRFPC 602
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BLAST of mRNA_D-mesarthrocarpus_Contig988.2.1 vs. uniprot
Match: A0A7R9Y8Y7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Y7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.990e-22
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 RHFRLAARMTGKIYLPHRDSNSGDITCKGTSDNIVIPVNSFRSVMDSALRLARSFDDGLSECGLICPPGVLALDSGNDPFYGVPGVHPVKKPARPSTKFPC 303
            RHFR AAR++GK+YLP R +    +TC+GTSD + +    FR V+D+A+RLARSFD G +ECGL C P +LALD     +    GV P+      STKFPC
Sbjct:  491 RHFRFAARLSGKLYLPMRTTQP--VTCRGTSDTVTVDAEEFRHVVDAAVRLARSFDSGHAECGLYCNPRLLALDKARS-YNETVGVAPL------STKFPC 582
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BLAST of mRNA_D-mesarthrocarpus_Contig988.2.1 vs. uniprot
Match: A0A7S3JQK9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQK9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.290e-21
Identity = 54/101 (53.47%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 RHFRLAARMTGKIYLPHRDSNSGDITCKGTSDNIVIPVNSFRSVMDSALRLARSFDDGLSECGLICPPGVLALDSGNDPFYGVPGVHPVKKPARPSTKFPC 303
            RHFRLAARM GKIYLP R      ++C GTSD I I    F SV+D+ALR+AR+FDDG++ECGL C   +LALD G         V P  KP   +T+FPC
Sbjct:  465 RHFRLAARMAGKIYLPMRSMQP--VSCSGTSDAIPIDSKQFESVLDAALRIARAFDDGIAECGLSCDLRLLALDPGAS-------VPPGTKPL--TTRFPC 554
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig988.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4D838_HETAK4.880e-2760.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3GV16_9STRA2.550e-2651.49Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SZ26_9STRA3.210e-2657.43Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A8J2SL80_9STRA1.490e-2556.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9Y8Y7_9STRA4.990e-2250.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3JQK9_9STRA4.290e-2153.47Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig988contigD-mesarthrocarpus_Contig988:3120..4109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size381
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791138.7079341-UTR-D-mesarthrocarpus_Contig988:3119..31941680791138.7079341-UTR-D-mesarthrocarpus_Contig988:3119..3194Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig988 3120..3194 -
1680791138.750648-UTR-D-mesarthrocarpus_Contig988:4085..41091680791138.750648-UTR-D-mesarthrocarpus_Contig988:4085..4109Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig988 4086..4109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791138.725752-CDS-D-mesarthrocarpus_Contig988:3194..34161680791138.725752-CDS-D-mesarthrocarpus_Contig988:3194..3416Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig988 3195..3416 -
1680791138.7365398-CDS-D-mesarthrocarpus_Contig988:4025..40851680791138.7365398-CDS-D-mesarthrocarpus_Contig988:4025..4085Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig988 4026..4085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig988.2.1prot_D-mesarthrocarpus_Contig988.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig988 3195..4085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig988.2.1

>prot_D-mesarthrocarpus_Contig988.2.1 ID=prot_D-mesarthrocarpus_Contig988.2.1|Name=mRNA_D-mesarthrocarpus_Contig988.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=94bp
MTGKIYLPHRDSNSGDITCKGTSDNIVIPVNSFRSVMDSALRLARSFDDG
LSECGLICPPGVLALDSGNDPFYGVPGVHPVKKPARPSTKFPC*
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mRNA from alignment at D-mesarthrocarpus_Contig988:3120..4109-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig988.2.1 ID=mRNA_D-mesarthrocarpus_Contig988.2.1|Name=mRNA_D-mesarthrocarpus_Contig988.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=990bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig988:3120..4109- (Discosporangium mesarthrocarpum MT17_79)
CGCCACTTTCGCCTTGCAGCTCGCATGACAGGAAAGATCTACCTCCCCCA
TCGCGACTCCAACTCGGGGGACATCACTTGCAAAGTGAGAGCTGTTGTTG
CTTGGGAGAGCGAGCAAGCGCACTTTCCGCTCGTGTTGATCACACTCAGA
AGCGGGCCAGGTAGCAGCAGCTTGTGTTGATCACTCTCAGAAGCAGACCA
GGTAGCAGCGCACCACTTGCCTGCACAAGTTTTTCTCTGCCTGCGTCGGA
CTTCCATTGTCCTTGACGTCGGTGCATGGTGGTGTGTACAACCGCCCCTA
CTGCTTGAGGTGCTTTAATGCTCGAGCGGCAGCACACACGCTAGCATGCG
GACTTTACAGTGAGCACATTTTTCCACGCCAACTCCGATAGCGAGATCCT
GTACTATTACAATCACAAGTTTCCCTGAACACTCCTCCTAGAGCATCTTG
TCCCTTGACTGGATTCCCACAAGAAACGTGTAAGGGGCTTAATCTCATGT
TTTCTATTGCTCCTTTAGGGTTAGGGTTAGGTTTAGGGTTAAGGTTAGGT
TTAGGGTTAGGGTTAAGGTTAGGCTTAGGGTTAGGGTTAGGGTTTCATCT
TGTGCAATGCACAAAAGGCGCAGTTGGTGATTCCCTCTCCCCCCCCCCTG
TTTTCTTTCCCCCTTCCCCTGCCTCACTCTAAACTAAACACAGGGCACCA
GTGACAACATTGTAATCCCTGTTAACAGCTTCCGTTCCGTGATGGACTCT
GCCCTGCGCCTGGCGCGTTCCTTTGACGATGGCCTCTCTGAATGTGGCCT
GATATGCCCTCCTGGGGTATTAGCCCTGGACAGCGGGAATGACCCCTTTT
ATGGGGTACCAGGGGTACACCCAGTGAAGAAACCTGCCAGACCTTCCACA
AAATTCCCCTGTTAATTTCAATGGCCTGATCAAAGTGTAATGGAGGGCAA
TGTGCCAGTGCCTCTGATTGCAGTCTGCTTTAGGTGAAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig988:3120..4109-

>mRNA_D-mesarthrocarpus_Contig988.2.1 ID=mRNA_D-mesarthrocarpus_Contig988.2.1|Name=mRNA_D-mesarthrocarpus_Contig988.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=282bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig988:3120..4109- (Discosporangium mesarthrocarpum MT17_79)
ATGACAGGAAAGATCTACCTCCCCCATCGCGACTCCAACTCGGGGGACAT
CACTTGCAAAGGCACCAGTGACAACATTGTAATCCCTGTTAACAGCTTCC
GTTCCGTGATGGACTCTGCCCTGCGCCTGGCGCGTTCCTTTGACGATGGC
CTCTCTGAATGTGGCCTGATATGCCCTCCTGGGGTATTAGCCCTGGACAG
CGGGAATGACCCCTTTTATGGGGTACCAGGGGTACACCCAGTGAAGAAAC
CTGCCAGACCTTCCACAAAATTCCCCTGTTAA
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