mRNA_D-mesarthrocarpus_Contig9874.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9874.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9874.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: UPI0009013EB8 (glutamine synthetase cytosolic isozyme n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009013EB8)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-7
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 1
Query:   10 KIIVEYVWIGGTGQGQRSKFRTISKI---RYSLPLIAWRPSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            KIIVEY+WI GTG G RSK RTI K       LP   +  SSTG APG   EV+L P+     P  R  ++
Sbjct:   18 KIIVEYIWIDGTGLGLRSKARTIPKAVKDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGNNI 88          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: B4UW78_ARAHY (Glutamine synthetase GS56 (Fragment) n=1 Tax=Arachis hypogaea TaxID=3818 RepID=B4UW78_ARAHY)

HSP 1 Score: 55.1 bits (131), Expect = 1.400e-7
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    7 RKIIVEYVWIGGTGQGQRSKFRTIS---KIRYSLPLIAWRPSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            +KII EY+WIGG+G   RSK RTIS        LP   +  SSTG APG   EV+L P+     P  R +++
Sbjct:   18 KKIIAEYIWIGGSGMDIRSKARTISGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGENI 89          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: A0A650AVJ7_9MAGN (Glutamine synthetase n=4 Tax=Crassulaceae TaxID=3781 RepID=A0A650AVJ7_9MAGN)

HSP 1 Score: 55.5 bits (132), Expect = 3.730e-7
Identity = 33/72 (45.83%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    7 RKIIVEYVWIGGTGQGQRSKFRTISK-IRYSLPLIAWR--PSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            +KII EY+WIGG+G   RSK RTI K I     L  W    SSTG APG   EV+L P+     P  R  ++
Sbjct:   16 KKIIAEYIWIGGSGMDLRSKARTIDKPISGPADLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNI 87          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: A0A6P6T536_COFAR (Glutamine synthetase n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A6P6T536_COFAR)

HSP 1 Score: 55.1 bits (131), Expect = 5.110e-7
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 1
Query:    1 SRRKIIVEYVWIGGTGQGQRSKFRTIS---KIRYSLPLIAWRPSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            S  K+IVEY+W+GG+G   RSK RTIS        LP   +  SSTG APG   EV++ P+     P  R  ++
Sbjct:   15 STEKVIVEYIWVGGSGMDLRSKARTISGPVDDPKKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNI 88          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: A0A7N0V207_KALFE (Glutamine synthetase n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0V207_KALFE)

HSP 1 Score: 55.1 bits (131), Expect = 5.130e-7
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    7 RKIIVEYVWIGGTGQGQRSKFRTISKIRYS---LPLIAWRPSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            +K+I EY+WIGG+G   RSK RTI K   S   LP   +  SSTG APG   EV+L P+     P  +  ++
Sbjct:   16 KKVIAEYIWIGGSGMDLRSKARTIDKPFSSPADLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNI 87          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: A0A6P5NPX3_ARADU (Glutamine synthetase n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5NPX3_ARADU)

HSP 1 Score: 55.1 bits (131), Expect = 5.140e-7
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    7 RKIIVEYVWIGGTGQGQRSKFRTIS---KIRYSLPLIAWRPSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            +KII EY+WIGG+G   RSK RTIS        LP   +  SSTG APG   EV+L P+     P  R +++
Sbjct:   18 KKIIAEYIWIGGSGMDIRSKARTISGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGENI 89          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: UPI001D0E46C5 (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI001D0E46C5)

HSP 1 Score: 51.6 bits (122), Expect = 5.790e-7
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 SRRKIIVEYVWIGGTGQGQRSKFRTI-SKIRYSLPLIAWR--PSSTGHAPGGGLEVMLDP 171
            S +KII EY+WIGG+G   RSK RT+ + + +   L  W    SSTG APG   EV+L P
Sbjct:   15 STKKIIAEYIWIGGSGMDIRSKARTLPAPVSHPSKLPKWNYDGSSTGQAPGEDSEVILYP 74          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: A0A2G5F880_AQUCA (Glutamine synthetase n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F880_AQUCA)

HSP 1 Score: 54.3 bits (129), Expect = 9.450e-7
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    7 RKIIVEYVWIGGTGQGQRSKFRTIS---KIRYSLPLIAWRPSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            +KII EY+WIGG+G   RSK RT+S        LP   +  SSTG APG   EV+L P+     P  R  ++
Sbjct:   17 KKIIAEYIWIGGSGMDLRSKARTLSGPVSDPKELPKWNYDGSSTGQAPGTDSEVILYPQAIFKDPFRRGNNI 88          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 n=9 Tax=rosids TaxID=71275 RepID=GLNA1_VITVI)

HSP 1 Score: 54.3 bits (129), Expect = 9.570e-7
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 1
Query:   10 KIIVEYVWIGGTGQGQRSKFRTIS---KIRYSLPLIAWRPSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            K+IVEY+W+GG+G   RSK RT+S        LP   +  SSTG APG   EV+L P+     P  R  ++
Sbjct:   18 KVIVEYIWVGGSGMDLRSKARTLSGPVSDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNI 88          
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Match: F6GSQ2_VITVI (Glutamine synthetase n=1 Tax=Vitis vinifera TaxID=29760 RepID=F6GSQ2_VITVI)

HSP 1 Score: 54.3 bits (129), Expect = 9.690e-7
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 1
Query:   10 KIIVEYVWIGGTGQGQRSKFRTIS---KIRYSLPLIAWRPSSTGHAPGGGLEVMLDPRQSLPTPSERAKSV 213
            K+IVEY+W+GG+G   RSK RT+S        LP   +  SSTG APG   EV+L P+     P  R  ++
Sbjct:   18 KVIVEYIWVGGSGMDLRSKARTLSGPVSDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNI 88          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009013EB81.060e-747.89glutamine synthetase cytosolic isozyme n=2 Tax=Ipo... [more]
B4UW78_ARAHY1.400e-744.44Glutamine synthetase GS56 (Fragment) n=1 Tax=Arach... [more]
A0A650AVJ7_9MAGN3.730e-745.83Glutamine synthetase n=4 Tax=Crassulaceae TaxID=37... [more]
A0A6P6T536_COFAR5.110e-741.89Glutamine synthetase n=3 Tax=Pentapetalae TaxID=14... [more]
A0A7N0V207_KALFE5.130e-743.06Glutamine synthetase n=1 Tax=Kalanchoe fedtschenko... [more]
A0A6P5NPX3_ARADU5.140e-744.44Glutamine synthetase n=1 Tax=Arachis duranensis Ta... [more]
UPI001D0E46C55.790e-748.33hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
A0A2G5F880_AQUCA9.450e-743.06Glutamine synthetase n=2 Tax=Aquilegia coerulea Ta... [more]
GLNA1_VITVI9.570e-742.25Glutamine synthetase cytosolic isozyme 1 n=9 Tax=r... [more]
F6GSQ2_VITVI9.690e-742.25Glutamine synthetase n=1 Tax=Vitis vinifera TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9874contigD-mesarthrocarpus_Contig9874:2746..3484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog13333.ERM95854
PFAMsGln-synt_C,Gln-synt_N
Model size231
Max annot lvl35493|Streptophyta
KEGG rclassRC00010,RC02798
KEGG koko:K01915
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.61e-09
EggNOG OGsCOG0174@1|root,KOG0683@2759|Eukaryota,37JCK@33090|Viridiplantae,3GG2Q@35493|Streptophyta
EC6.3.1.2
Descriptionglutamine synthetase
Cds size231
COG categoryE
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791138.3126693-CDS-D-mesarthrocarpus_Contig9874:2745..28371680791138.3126693-CDS-D-mesarthrocarpus_Contig9874:2745..2837Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9874 2746..2837 +
1680791138.325361-CDS-D-mesarthrocarpus_Contig9874:3345..34841680791138.325361-CDS-D-mesarthrocarpus_Contig9874:3345..3484Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9874 3346..3484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9874.1.1prot_D-mesarthrocarpus_Contig9874.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9874 2746..3484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9874.1.1

>prot_D-mesarthrocarpus_Contig9874.1.1 ID=prot_D-mesarthrocarpus_Contig9874.1.1|Name=mRNA_D-mesarthrocarpus_Contig9874.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=77bp
SRRKIIVEYVWIGGTGQGQRSKFRTISKIRYSLPLIAWRPSSTGHAPGGG
LEVMLDPRQSLPTPSERAKSVRLSVTL
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mRNA from alignment at D-mesarthrocarpus_Contig9874:2746..3484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9874.1.1 ID=mRNA_D-mesarthrocarpus_Contig9874.1.1|Name=mRNA_D-mesarthrocarpus_Contig9874.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=739bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9874:2746..3484+ (Discosporangium mesarthrocarpum MT17_79)
AGCAGAAGGAAGATCATCGTCGAATACGTTTGGATTGGTGGCACTGGCCA GGGCCAGAGAAGCAAGTTCCGTACCATCTCCAAGATACGCTAGTGCCCTG TGTCAAAAAGAACAGCTCCTTGAGCATGTCTTTGCAGGTAATGGTTGGTA GAGAAAAGAAGTGATGTTAAGCCCACCATCGGGGGGGGGCAAGGGCACCC CCGTCCCGGTAATCATTTTAACTGTTCCCTAGACAATATAGGAACGTTGT TACTTGTTCCTATTCTAATAAACTCAACGACCACATCCAGAAGAATTATA TTGTCTGTTTCCTATGAAATTGGGTACTTCAACATCTATTATATTTCTCG CTACCTGCTCGCAACCATGGACTGATATGAGAGTAATGCCCACGAACGCA CACGTACTTATCGGTTACTTCTCATCCACTACACTTACACATTTGCATAG TGTTAAGTGAGCATAATACGAACACCCCGCTAACTTGTGAGTCCTCTGTA GGTACTGGCATTTACAAACTGAATTAACTTCTTGTCGTATTGTCCCTAGT AAGCACAAATGCAATCTCCGAATAACGCCCCTTCCAACCCTTCGACTGAG TTCCCTACCGCTAATCGCTTGGAGGCCATCCTCGACCGGGCACGCTCCGG GCGGGGGGCTCGAGGTGATGCTAGATCCCAGACAGTCTTTGCCTACCCCT TCCGAAAGGGCGAAATCTGTTCGTCTTAGTGTTACTTTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9874:2746..3484+

>mRNA_D-mesarthrocarpus_Contig9874.1.1 ID=mRNA_D-mesarthrocarpus_Contig9874.1.1|Name=mRNA_D-mesarthrocarpus_Contig9874.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=231bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9874:2746..3484+ (Discosporangium mesarthrocarpum MT17_79)
AGCAGAAGGAAGATCATCGTCGAATACGTTTGGATTGGTGGCACTGGCCA
GGGCCAGAGAAGCAAGTTCCGTACCATCTCCAAGATACGCTATTCCCTAC
CGCTAATCGCTTGGAGGCCATCCTCGACCGGGCACGCTCCGGGCGGGGGG
CTCGAGGTGATGCTAGATCCCAGACAGTCTTTGCCTACCCCTTCCGAAAG
GGCGAAATCTGTTCGTCTTAGTGTTACTTTG
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