mRNA_D-mesarthrocarpus_Contig9868.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9868.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9868.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9868.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9868contigD-mesarthrocarpus_Contig9868:98..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size451
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791137.5386732-UTR-D-mesarthrocarpus_Contig9868:97..1941680791137.5386732-UTR-D-mesarthrocarpus_Contig9868:97..194Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9868 98..194 -
1680791137.5618742-UTR-D-mesarthrocarpus_Contig9868:497..5481680791137.5618742-UTR-D-mesarthrocarpus_Contig9868:497..548Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9868 498..548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791137.5512755-CDS-D-mesarthrocarpus_Contig9868:194..4971680791137.5512755-CDS-D-mesarthrocarpus_Contig9868:194..497Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9868 195..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9868.1.1prot_D-mesarthrocarpus_Contig9868.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9868 195..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9868.1.1

>prot_D-mesarthrocarpus_Contig9868.1.1 ID=prot_D-mesarthrocarpus_Contig9868.1.1|Name=mRNA_D-mesarthrocarpus_Contig9868.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=101bp
MSYAPPSLLLSSTPPLKKTFAEACVPQSLLWIRGLLKYKCPVQCSYGVHL
SMHNPSRGMTSCLTRMHACRRVYCSRLRIYMPGYASHALFFGVFAGLIFI
*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9868:98..548-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9868.1.1 ID=mRNA_D-mesarthrocarpus_Contig9868.1.1|Name=mRNA_D-mesarthrocarpus_Contig9868.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=451bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9868:98..548- (Discosporangium mesarthrocarpum MT17_79)
CATCTCTGTCCCGCTCGCACTGGTGAGAGAACGGGCAATAACAATCAGGC
AATGAGCTATGCACCACCCTCCCTCCTTCTCTCTTCCACTCCCCCATTGA
AAAAAACATTTGCAGAGGCATGCGTGCCCCAAAGCCTTCTGTGGATCCGG
GGACTACTCAAATACAAATGCCCAGTACAGTGTTCCTATGGTGTGCACCT
CTCAATGCATAACCCCAGTAGGGGAATGACATCATGCCTCACGCGAATGC
ATGCATGCAGGCGTGTGTACTGTAGTAGGTTAAGGATATATATGCCTGGA
TATGCTTCTCACGCCCTGTTTTTTGGAGTGTTTGCTGGGTTGATATTCAT
TTGAAATCATCACCACATGGTCTACCTGGGGTCGTGCTATTCCTGCTCAA
CACCCCTCTTCCCCCCCATGGCTCAGGGTTAAGGGTCAGGGTTAGGCTGC
C
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9868:98..548-

>mRNA_D-mesarthrocarpus_Contig9868.1.1 ID=mRNA_D-mesarthrocarpus_Contig9868.1.1|Name=mRNA_D-mesarthrocarpus_Contig9868.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=303bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9868:98..548- (Discosporangium mesarthrocarpum MT17_79)
ATGAGCTATGCACCACCCTCCCTCCTTCTCTCTTCCACTCCCCCATTGAA
AAAAACATTTGCAGAGGCATGCGTGCCCCAAAGCCTTCTGTGGATCCGGG
GACTACTCAAATACAAATGCCCAGTACAGTGTTCCTATGGTGTGCACCTC
TCAATGCATAACCCCAGTAGGGGAATGACATCATGCCTCACGCGAATGCA
TGCATGCAGGCGTGTGTACTGTAGTAGGTTAAGGATATATATGCCTGGAT
ATGCTTCTCACGCCCTGTTTTTTGGAGTGTTTGCTGGGTTGATATTCATT
TGA
back to top