mRNA_D-mesarthrocarpus_Contig9866.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9866.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9866.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9866.1.1 vs. uniprot
Match: A0A6H5JV94_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV94_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.540e-55
Identity = 109/197 (55.33%), Postives = 136/197 (69.04%), Query Frame = 1 
Query:    1 LLLTSTDASVREAAQRACKGGIKDASVVCSSLDCGARAALHKDHEGSLAAAGRALEIAPQCPTAQEMQATALLGLHCPSACVAFCESVCLRPRGDPFDDHPWPPPPG--SPPLSPVQATLGMASGVARRYATALRGSGKGLDAMAALQALRCRDPSLEWCLEDLARWDLVGRLRRDGIACSGAGEHRAAAQAFTQVI 585
            L ++  D SV   AQR C  GI++AS V S+L+ GAR++ H  HE  LAAA RALEIAPQC  AQEM+A+ALL L  P+ CV FCE+VC+RPR DP DD  W    G  +  + P+QA LGMA GVAR YA+ALRG G+  +A+  +QALRCRDPSL WC+ED A WD  GRL  +G   +  G+H  AA+AFTQV+
Sbjct:  570 LAISQPDRSVMVEAQRMCSAGIEEASRVGSALESGARSSRHGQHEAVLAAASRALEIAPQCAAAQEMRASALLRLLRPTECVLFCEAVCIRPRADPEDDFDWAAAGGRTAGSMCPIQAALGMAPGVARLYASALRGCGRQHEALPVVQALRCRDPSLAWCVEDGACWDRAGRLTVEGERLAAGGDHAKAAEAFTQVL 766
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9866.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV94_9PHAE2.540e-5555.33J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9866contigD-mesarthrocarpus_Contig9866:598..3546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G2M1
PFAMsDnaJ
Model size588
Max annot lvl2759|Eukaryota
KEGG koko:K09527
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.66e-55
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota
Descriptionprotein folding
Cds size588
COG categoryO
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791137.4512973-CDS-D-mesarthrocarpus_Contig9866:597..7471680791137.4512973-CDS-D-mesarthrocarpus_Contig9866:597..747Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9866 598..747 -
1680791137.4670122-CDS-D-mesarthrocarpus_Contig9866:1495..15841680791137.4670122-CDS-D-mesarthrocarpus_Contig9866:1495..1584Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9866 1496..1584 -
1680791137.4833257-CDS-D-mesarthrocarpus_Contig9866:2350..24951680791137.4833257-CDS-D-mesarthrocarpus_Contig9866:2350..2495Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9866 2351..2495 -
1680791137.5022137-CDS-D-mesarthrocarpus_Contig9866:3342..35461680791137.5022137-CDS-D-mesarthrocarpus_Contig9866:3342..3546Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9866 3343..3546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9866.1.1prot_D-mesarthrocarpus_Contig9866.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9866 598..3546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9866.1.1

>prot_D-mesarthrocarpus_Contig9866.1.1 ID=prot_D-mesarthrocarpus_Contig9866.1.1|Name=mRNA_D-mesarthrocarpus_Contig9866.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=196bp
LLLTSTDASVREAAQRACKGGIKDASVVCSSLDCGARAALHKDHEGSLAA
AGRALEIAPQCPTAQEMQATALLGLHCPSACVAFCESVCLRPRGDPFDDH
PWPPPPGSPPLSPVQATLGMASGVARRYATALRGSGKGLDAMAALQALRC
RDPSLEWCLEDLARWDLVGRLRRDGIACSGAGEHRAAAQAFTQVI*
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mRNA from alignment at D-mesarthrocarpus_Contig9866:598..3546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9866.1.1 ID=mRNA_D-mesarthrocarpus_Contig9866.1.1|Name=mRNA_D-mesarthrocarpus_Contig9866.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2949bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9866:598..3546- (Discosporangium mesarthrocarpum MT17_79)
CTTCTGCTCACCTCCACAGACGCCTCGGTGAGGGAAGCGGCCCAGCGTGC
CTGCAAGGGGGGCATCAAGGACGCCTCCGTGGTGTGCAGCTCCCTCGACT
GCGGGGCGAGGGCAGCCTTGCACAAGGACCATGAGGGGTCTCTGGCAGCG
GCAGGGCGAGCGTTGGAGATCGCACCCCAGTGCCCGACTGCACAGGAGAT
GCAGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGGTGGGGTTAGGGTTA
GGGTTAGGGTTGGGGTTAGGGTTAGGAGTGGGGTTAGGGTTAGGGGTGGG
GTTAGAGTTAGGGTCGGGGTAAGGGTTAGGGGTGGGGTTAGAGTTAGGGT
CGGGGTAAGGGTTAGGGGTGGGGGCACGATGTTTGTACTAGACAGGGTGG
GGAAAGAGGGGAGGGAAGGTTTTCTTTCTGTTCTTGCTGTTGTGTGGATA
TGTTTTGGTGCCTCTGTGGGGCTTTGGGCCTGATTGCGTATTTTGGTGGA
TGCTCTGCGTGATGTGATTGGCTGGTTGATCAATCGGGGGCATGGGCAGA
CAGGCAGTGATTTCCAACACACCCTAAGACTGGAAAGCACTTGAGTGAAA
ACAGGCGGTACATAAGAAGGTATACCTGGGGTTAGGATATCGTATTCTAA
ACCCCCCCATTCCTACAGCATGTGCGGGATATTCTCTCTTCAGATCCAGT
GCCACCGTGGCTCCATCTCCTTCACCAACCCGGGTATTGTGCATCATAAC
CCCAAATTTTCAGTTCAAGTACACCCCCCCACCCCCCCCCCCCCCGTTTT
TTCTTCACAGAAGAGGGTCGTGGTGAAACGCCCTAGTCACTCATCGCAGG
GCCTGACCACTAGCCCCAAATAACTAGCCCCTAACCCTAACCCTAGCCCC
AACCCTGACCCTAACAGAGATGCGGGATATAGTGTTACTACTTCTACTGA
ACGGTATGTGTGTCACACGAGTCATACCAAGGCAGCAATCAATTTTTTTT
TTAGAGCTCTCACATGAATTCGTTGTCGTCCTTTCTTGCTTTGTTCTGCA
GGCGACAGCTCTGCTTGGGCTGCACTGCCCGTCAGCTTGCGTGGCCTTCT
GCGAGTCGGTGTGCCTGCGCCCCAGGGGTGATCCCTTCGATGACCACCCT
TGGCCCCCACCCCCGGGGTCGCCCCCATTATCACCTGTTCAGGCGAGTCC
TTTTTTCAGTCGTTGAGGGGTCGTGTGAAAAAGAGAAGTATGGTGATTTG
CTTGCTGTATGGACGTATGTCACCTTGCCATGGAGAAGTGTTTCACTTTG
CGCTGTGAGAAGCAGGGCATACGTGACACATGAGCAGCAAGGGGCAACAC
TTTCCTTTCCCCCCCCATCGACTGCTTCACCGGGGATAAGCAGCACTTTG
AACAAGTAGGACAAGCCTCAAACAGATTGTGTATGAAACGATGTTGGTGT
GTGGAAACGCACTCCTTGAAAGAGGGGGCAGGGACATTCCTCATTGGTCA
TTCTCCACTTAAGGGGAAGGATCTTCATCTTTGATGATTCTTTACTGCGT
TGTGTGAGGGTTATTTACAGCGGAAGAGGAGACACTGCCAGTGGCTCCAT
GGACCAGGTTTCCAGACGTTTTTGGGTGTGACTGCATGTGGTGGATGTCT
GCGTTCTGTTCCTTGCGCATATGCATGTGCTTCTGCCCCAGGCAATCTTG
TCCACGTATAAGTGCCGTTGGTCTGTTATAGTTTTCCTTGCCTTTATAGT
TTGAACACTAGAGTGGTAGGTAAAGCTATATGTTGGTGCACCTCCTTGAC
TATTCAAAGCTGATTTTCGTGGGCCTGCCTCTGCACTCCTTTGATATCTT
GTCGCTCTTATCCCCCTTACTCTGCCCCCCCCCATGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTGTGAATATCTCATGTG
CCGTTCAGGCAGCCTTAGGGATGGCCTCAGGGGTTGCCCGTCGCTACGCA
ACTGCTCTCCGAGGATCTGGCAAGGGGCTGGATGCTATGGCCGCCCTGCA
GGTGGGTGGGTGGGTGGGTGGGTGGGTGTGTTGACACTGGGTCAATTTGT
CTGTTTGGGTGGCATTTAGTTGACCGCGTGTTCCGGGAGTTCCAGGTGTG
TTTAGTTTGTCCATTTTTGGTGTTCTTGCCTGTTTTCATGTCCCACCTTT
CGGGTGCCAGTCCTGGTTCTTGCAAAGAAGCGCCTGCTCTTCCGCCCGGG
GCATTACTGTCTTGAGAGTACAGGGCATAAGGAATGACCTGAGGACAGGG
AGATGAGCTCTGGAATGACACGCAGGGTGTCAGGTCTTTTGGCTGTTCTG
AAAAAGGCACTCGCCTGCAGGTTCCGTCTTGCACCCTCTTTTTTTTCGTT
TCCCGCTCGTACTGGACCCAGGTGCCTCAATGAAGTGCCAGGCGAACATG
TAAGTGTAGGTTGTACGCGTACGATTGCATACTTGATGGAGTGTGATTGC
ATACTTCTTGAAGTAGGATTTTATACCTCTTGAAGTATGATTGTGTGTTG
TGGTCTACAGAGTACTTGGTGCTCTATATGATCTAAATAACTGGCGGTTG
TGCTCTGCAGTCTATGCTGGGCTGTTGAACGTGTTGCCACAGTAGGCATT
TAATGTTCTGTGAAGTACACACTATTGTGTGTGATACCCCGCCAACGCCC
AGCCCTGGTACGGCACCCCAATGTGCTCCCCACAAAACCCTAACCCTGAC
CCCTTTTCCCTCCCTCCCCCCCCCACTGCCCACTCACCCTCTGACCCAGG
CACTAAGATGCCGCGACCCATCGTTGGAATGGTGCCTTGAGGACTTGGCC
CGGTGGGACCTTGTCGGGAGGTTGAGGAGGGATGGGATCGCTTGTAGTGG
TGCAGGAGAACACCGGGCGGCTGCCCAGGCGTTCACGCAGGTGATTTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9866:598..3546-

>mRNA_D-mesarthrocarpus_Contig9866.1.1 ID=mRNA_D-mesarthrocarpus_Contig9866.1.1|Name=mRNA_D-mesarthrocarpus_Contig9866.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=588bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9866:598..3546- (Discosporangium mesarthrocarpum MT17_79)
CTTCTGCTCACCTCCACAGACGCCTCGGTGAGGGAAGCGGCCCAGCGTGC
CTGCAAGGGGGGCATCAAGGACGCCTCCGTGGTGTGCAGCTCCCTCGACT
GCGGGGCGAGGGCAGCCTTGCACAAGGACCATGAGGGGTCTCTGGCAGCG
GCAGGGCGAGCGTTGGAGATCGCACCCCAGTGCCCGACTGCACAGGAGAT
GCAGGCGACAGCTCTGCTTGGGCTGCACTGCCCGTCAGCTTGCGTGGCCT
TCTGCGAGTCGGTGTGCCTGCGCCCCAGGGGTGATCCCTTCGATGACCAC
CCTTGGCCCCCACCCCCGGGGTCGCCCCCATTATCACCTGTTCAGGCGAC
CTTAGGGATGGCCTCAGGGGTTGCCCGTCGCTACGCAACTGCTCTCCGAG
GATCTGGCAAGGGGCTGGATGCTATGGCCGCCCTGCAGGCACTAAGATGC
CGCGACCCATCGTTGGAATGGTGCCTTGAGGACTTGGCCCGGTGGGACCT
TGTCGGGAGGTTGAGGAGGGATGGGATCGCTTGTAGTGGTGCAGGAGAAC
ACCGGGCGGCTGCCCAGGCGTTCACGCAGGTGATTTGA
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