mRNA_D-mesarthrocarpus_Contig9864.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9864.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9864.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9864.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9864contigD-mesarthrocarpus_Contig9864:2977..3455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size481
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791137.2327585-CDS-D-mesarthrocarpus_Contig9864:2976..32881680791137.2327585-CDS-D-mesarthrocarpus_Contig9864:2976..3288Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9864 2977..3288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791137.2454784-UTR-D-mesarthrocarpus_Contig9864:3288..34551680791137.2454784-UTR-D-mesarthrocarpus_Contig9864:3288..3455Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9864 3289..3455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9864.2.1prot_D-mesarthrocarpus_Contig9864.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9864 2977..3288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9864.2.1

>prot_D-mesarthrocarpus_Contig9864.2.1 ID=prot_D-mesarthrocarpus_Contig9864.2.1|Name=mRNA_D-mesarthrocarpus_Contig9864.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=104bp
RTQCRPTPSSRWVCLGSYSDGDGVGGGEEEPSCLKIRQTTGCPSGGALYT
CRHFSNGPSIDGPGEERKRNPWKGRLPHNVAPRWKEQQWRKEQQWRRQVT
TAS*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9864:2977..3455+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9864.2.1 ID=mRNA_D-mesarthrocarpus_Contig9864.2.1|Name=mRNA_D-mesarthrocarpus_Contig9864.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=479bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9864:2977..3455+ (Discosporangium mesarthrocarpum MT17_79)
CGCACACAATGTCGACCAACACCCTCCTCCCGATGGGTTTGTCTTGGATC
TTATAGCGATGGAGATGGAGTGGGGGGGGGGGAGGAGGAGCCTTCTTGCT
TGAAGATAAGACAAACTACAGGATGTCCTTCGGGAGGGGCATTATATACA
TGTCGTCACTTCTCGAATGGTCCAAGCATAGATGGACCTGGAGAGGAGAG
AAAAAGAAATCCTTGGAAAGGGAGATTACCGCATAATGTCGCCCCCCGGT
GGAAGGAACAGCAATGGCGGAAGGAACAGCAATGGCGGAGGCAGGTAACA
ACTGCGTCATAGATATGCTGATGTACAAACACTTCGGGTACAAAGTTTTG
TCGCCGCTTGTGCTACATGATGTGAAGTCGAGCAATCTTCTTGTCGGAGT
CGTTCACTGTTACTCCAACCGCTTGATCGGTGCCTGTGGTTTTTCTCTTT
GCTTAGCAGCAATTGCGACTGCAGTCCCA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9864:2977..3455+

>mRNA_D-mesarthrocarpus_Contig9864.2.1 ID=mRNA_D-mesarthrocarpus_Contig9864.2.1|Name=mRNA_D-mesarthrocarpus_Contig9864.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=312bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9864:2977..3455+ (Discosporangium mesarthrocarpum MT17_79)
CGCACACAATGTCGACCAACACCCTCCTCCCGATGGGTTTGTCTTGGATC
TTATAGCGATGGAGATGGAGTGGGGGGGGGGGAGGAGGAGCCTTCTTGCT
TGAAGATAAGACAAACTACAGGATGTCCTTCGGGAGGGGCATTATATACA
TGTCGTCACTTCTCGAATGGTCCAAGCATAGATGGACCTGGAGAGGAGAG
AAAAAGAAATCCTTGGAAAGGGAGATTACCGCATAATGTCGCCCCCCGGT
GGAAGGAACAGCAATGGCGGAAGGAACAGCAATGGCGGAGGCAGGTAACA
ACTGCGTCATAG
back to top