mRNA_D-mesarthrocarpus_Contig9863.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9863.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9863.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9863.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9863contigD-mesarthrocarpus_Contig9863:940..2202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size258
Hectar predicted targeting categorysignal peptide
Exons2
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791137.1571524-UTR-D-mesarthrocarpus_Contig9863:939..9401680791137.1571524-UTR-D-mesarthrocarpus_Contig9863:939..940Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9863 940..940 -
1680791137.2019386-UTR-D-mesarthrocarpus_Contig9863:2173..22021680791137.2019386-UTR-D-mesarthrocarpus_Contig9863:2173..2202Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9863 2174..2202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791137.1773393-CDS-D-mesarthrocarpus_Contig9863:940..11161680791137.1773393-CDS-D-mesarthrocarpus_Contig9863:940..1116Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9863 941..1116 -
1680791137.1896176-CDS-D-mesarthrocarpus_Contig9863:2121..21731680791137.1896176-CDS-D-mesarthrocarpus_Contig9863:2121..2173Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9863 2122..2173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9863.1.1prot_D-mesarthrocarpus_Contig9863.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9863 941..2173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9863.1.1

>prot_D-mesarthrocarpus_Contig9863.1.1 ID=prot_D-mesarthrocarpus_Contig9863.1.1|Name=mRNA_D-mesarthrocarpus_Contig9863.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=76bp
MVLGMVYKALPAVAKLMSVAAYVRSLFGDLCLLFISTLSTVALGLALGSL
SPLAQGNSDPTLLSAPPATGGGGDL*
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mRNA from alignment at D-mesarthrocarpus_Contig9863:940..2202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9863.1.1 ID=mRNA_D-mesarthrocarpus_Contig9863.1.1|Name=mRNA_D-mesarthrocarpus_Contig9863.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1263bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9863:940..2202- (Discosporangium mesarthrocarpum MT17_79)
CCCCCCTGAGCAACACGGGGTCACCTGGGATGGTCCTGGGCATGGTCTAC
AAGGCCCTGCCCGCAGTGGCCAAGCTGATGAGTGAGTTGTCTGATGGCAG
AGAGAAGAGCTCTAGCACGTGGGGTGAATGCTTTTGGTTTGCAGGGGGGG
AGGGTGCTTGTTTGTACAGTGTTAGCCGTGAGGGCGGTGGCTTCAATGAG
GAACCAAACCGATGAAATATAATGTGATGGGACAACATGCCCCAAAGTGC
ATACCAAAGTGCATAGTGATCCTCCTCCTGTATCTAGTCTTTCTTTCTCC
CTTTCTTTTTTCTTTTCTCATTGGTCGTCGGGAGCTCTACAGTACTGCAG
TCGGCGCTTACTGCTGTGTATGGTATGCGCTTCCACTGTAGTAAGAACGG
TAATGCACACACATCTTGTGGTGTTCGTGCCCTAACCCTACGGATCTAGC
TCATTGTTCTCTTTTCGTCTTCCCAAACACGTGGTTCTTTTCACTTCATT
CATCTATTCACCCATTCTTGTGGGGGGATAGCCTCTCTCTCTCTCTCTCT
CTCTCTCTGAATAGTTCGTTGCAGCTTTGATACAGAGAGTGCATGGTGGG
TTACTTCATCAGTGGTTCTGGCAGATGGGTGACTGTGCTGAGGGAAGGAT
TATGGGGGAGCAGGTTGTACACGACGAGGAGATCACCAAGTGAAGGAGCA
AGCACTTAGCTTTTTTTTTTTTTGCTCCAATTCGTTCGGTCGCCTGGTTA
GGGTTATTGTGCGTGTTGATAATGTTAAGATTAATTAGCGCAGGGCTGGT
TTGCATCCCTCATTTGTGTGCTTTACCCACCCCAACCTTCTGCTCCGTGG
CTTTTTTCAGCTCAGGCACCAACCTCCTTGTGCTGATGCGCTGATAGGTG
CCTTTCACCACATGCCTGCTTGTGGGGTGTGGGTACCGGCTTCCATGCAA
ATGAGCAAATTCGTGTTGTAAACCCTACTGTCGCCTCTTCTGAGCATTAC
CCCTCCCCGACCATTGCTATCCCTAAGCCTACCCCTCGCCCTGTCCGTAC
CCCACCACACCACACCCCCACTGGGTGTCCTTGCAGGTGTGGCCGCTTAT
GTGCGGTCCCTGTTCGGAGATCTGTGCCTCCTTTTCATCAGTACCCTGTC
CACTGTCGCCCTGGGGCTGGCCCTGGGATCCCTGTCCCCGCTGGCGCAAG
GTAACAGTGATCCAACGCTGCTTTCAGCACCTCCTGCAACTGGGGGGGGG
GGTGACCTTTGAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9863:940..2202-

>mRNA_D-mesarthrocarpus_Contig9863.1.1 ID=mRNA_D-mesarthrocarpus_Contig9863.1.1|Name=mRNA_D-mesarthrocarpus_Contig9863.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=228bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9863:940..2202- (Discosporangium mesarthrocarpum MT17_79)
ATGGTCCTGGGCATGGTCTACAAGGCCCTGCCCGCAGTGGCCAAGCTGAT
GAGTGTGGCCGCTTATGTGCGGTCCCTGTTCGGAGATCTGTGCCTCCTTT
TCATCAGTACCCTGTCCACTGTCGCCCTGGGGCTGGCCCTGGGATCCCTG
TCCCCGCTGGCGCAAGGTAACAGTGATCCAACGCTGCTTTCAGCACCTCC
TGCAACTGGGGGGGGGGGTGACCTTTGA
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