mRNA_D-mesarthrocarpus_Contig986.8.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig986.8.1
Unique NamemRNA_D-mesarthrocarpus_Contig986.8.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig986.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig986contigD-mesarthrocarpus_Contig986:21392..24861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons5
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791136.8888566-CDS-D-mesarthrocarpus_Contig986:21393..214571680791136.8888566-CDS-D-mesarthrocarpus_Contig986:21393..21457Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig986 21394..21457 -
1680791136.9067776-CDS-D-mesarthrocarpus_Contig986:21952..220381680791136.9067776-CDS-D-mesarthrocarpus_Contig986:21952..22038Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig986 21953..22038 -
1680791136.9259076-CDS-D-mesarthrocarpus_Contig986:22973..230391680791136.9259076-CDS-D-mesarthrocarpus_Contig986:22973..23039Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig986 22974..23039 -
1680791136.9376228-CDS-D-mesarthrocarpus_Contig986:23935..240621680791136.9376228-CDS-D-mesarthrocarpus_Contig986:23935..24062Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig986 23936..24062 -
1680791136.9515996-CDS-D-mesarthrocarpus_Contig986:24784..248611680791136.9515996-CDS-D-mesarthrocarpus_Contig986:24784..24861Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig986 24785..24861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig986.8.1prot_D-mesarthrocarpus_Contig986.8.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig986 21394..24861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig986.8.1

>prot_D-mesarthrocarpus_Contig986.8.1 ID=prot_D-mesarthrocarpus_Contig986.8.1|Name=mRNA_D-mesarthrocarpus_Contig986.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=140bp
AESGEPTPVAIPRPLHPLLAAASPLSCGSMSDSYNDATPTPTPTAKRNIT
LWVPGVGLQAGMSTQMLKEKVDAITPSRNGSEKNPAQNDRSISMGSDGSE
ATRESVRDAVREHRRSYTRSRSRDRGRPRTIGHGASRGSA
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mRNA from alignment at D-mesarthrocarpus_Contig986:21392..24861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig986.8.1 ID=mRNA_D-mesarthrocarpus_Contig986.8.1|Name=mRNA_D-mesarthrocarpus_Contig986.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3470bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig986:21392..24861- (Discosporangium mesarthrocarpum MT17_79)
GCAGAGAGCGGGGAGCCAACCCCAGTGGCGATACCTCGCCCGCTGCACCC
ACTGCTGGCAGCAGCTTCACCCCTGAGGTATGTAGTTGGACACCTTGGGA
TGGTGTGGGAAACGAGGGGGTGGGGGGTGGGGAGAAGGAGGGGTTGTGAG
CTTTGGGTTGGTTGGGATAACATACTTGGTTGGGAGGGCCGGGGAGATGT
TGGATGAAAACTTGTTTTTTTGGGGTCTTGGGGGGGGAAGGGGTTGGGGG
GGGGCCTAGCTCTTACTGGGATTCAGGATTTTGATGTGCTGGTTGGTCTC
TTCCTTTAGTTGCTAGTTTGTTTGTGCTGCTTGTCCTCTTGTCATCGTCA
TGTTTTGTGATTTCTTGTGTGAAAGTTTCTTACCCCATCATCGCTTCATT
TTTGCTTTTTGTTGTTGACGCTGTTCTTGCTGTTGCTGAGATGGTGTCCA
GTATGGGTTAGGGTTAGGGTTGTTGAGGCACTAGCTGTCCGGCAGTGGGC
CTGCATTTCTTTTGAGTGTGTCATGGAGTGTGCATGTGAAGCTCTCTTTT
CCTCTGTCGTTCTTGCTCTTCCCCCCAGGGTTAGGATTATGTAGACATCG
TACTTGTACACCCGAATTACCAGTGCATGCCTCGATGAGCCTGAGATCAT
GAATGAAAAGAGACCCACTCCTAACCCTACCCCCCTATCCCCTACCCCAT
ACCTCCTACCGCATCCACCCCATGATGGTGGTTCATCTCGGGAACTGGAC
TCGAAAAAACAACAAAAATGGATGCCGTTTGTTTTTGTCTTTGATGCAGC
TGCGGTTCCATGAGTGACTCGTACAACGACGCAACCCCTACACCTACTCC
TACGGCAAAGCGCAACATCACACTCTGGGTGCCTGGGGTGGGCCTGCAGG
CGGGGATGTCGACACAGATGCTGAAGGTGCGTTATGTTTCTACCAGTACG
TACGTCGTCAAAAGCACGATGGAAGTCTACCCTTACAGCATGTTTGCACC
ACTCGCTCGCTCTCTCTCACATTTTTTTTGTCGGTTGTTCCCTGTTGTGA
TTCACATCACATCACTGCGTTGTTCTGTTTTTTCAGTTCGTTTTGTTTTG
CGGGTTTATCGAGCCTCGATGCTGTGTGCTGTCGTGAAGAGAATGAGGGA
ACAAGGGAGAGAGGGGGGGAAAGCTAACTGGGTTCAGTTCAAGAGGAGAA
AGATCCGATTTAGGCATTCGAAGATGGACGTGTTTCACTGCACTTTTCTA
CACTGTGTCAATCGCTTAGTGGGGGGGGTTGGGGGAGGGGCGTTCGGAAG
ACGTTGCCTTACAATCAAACAGGGAAATCTGACCCTATTCCCCGAAGTAT
GAGAAGAAGACGAAGAAGAAAACCTGAAAACTGGTGTATCATCCTTTCTG
TGTGTGTATATTGCAGTTGCCCTAACCATCAATTGATAGCATTTTTGTCT
CCTTGCCATACCGTACCACAACCTTGCCATCTCGCTCATGGCGCATATCC
TCTCCTCATCCAGGGTCGTTGTGCGTTATGCCTGCCCCTTTACCTGTGAT
GCTGAGATAAGCACGAACTGCAGGGCATCCCGCGTAGGGTTTTGGGGTTA
GAGCTTGTGAAGGATATGAAGCGTGCTTTAAGTTCACAAAGCAGCGATTT
CTTGGTGCTGGAGTGCCAGAGTGCCGGAGTGCCAGAAGGCATGAAACACG
CACGATGCCCCCTTCTTTGGTTCCTCCATTATATATCGTTCTCTGTTGTT
TTTAGTTATCTCGTGGTTGTTGTTCTTTCTTTGAACTTGGGTCTTGTCGG
TCCCTGCTGTCCTTGTCTACAGGAGAAGGTTGATGCCATCACTCCAAGCA
GGAATGGCAGCGAAAAAAACCCGGCACAGAACGACAGGGTAAGAGTGCGC
GATCAATGGGAGCCCTGTGCGCCCGCCTCTAGCCCTAACCCCAACCCTAA
CCCTATTCTTGGGGCAGAAAGAGTGAGCAGTCGATGAGAGGCTCATGTTC
GCTAACCCTCAGCCCTGCTTTCATATGTAACTAACCGTACAGTATGAAGG
CCTACGAAAGAGTGAGTGATCAAACAAAGCCACACGCATCCTTAACCCTA
ACCCAAAGCCCTTAGAGAGAGTTAATGTGGTGATCGATGAGAACCGCATT
CATCTTCAACCTTGCACCTTTCCCTATATGCCAAGGACCACGGATCTTTT
CAATTGAATGAGCGGTCAAAGGGAGCGACAGGCATCCCTAGCCCCACCCC
TAGCCCTGGCCCTGTAACCCGAGGAACCTTCAATAGAGTAGGTGATCAAC
ATCACACGAGCTGCATGCACCCATCCGTCCGTAAATCCTAACCATTTTGC
CCCTAGGACCTGACGTAATGAGTAGGATACGGGTCGAAGAGTGGGCAACT
TTCCCTGAGGGTTAGGACCTTCCAGGCATCTTGCCTACAACACCCCTAAA
GCACAGTACATAGATCCCCTCCCTCACATGAGCTTCCTTGTGACAGGTGG
TGTAGCACTTACGAACAGCTACTGTACATCTCTCTTTGGTGCCAGATGCT
GCATCACAGCGTATGCCCGCTGCCACCGCCACCACTGTAATCGTTCCTAC
ACCCAAGCCACACTGCTTTTTCAAAATGACGCATCTTTTTTCTCTCTCTC
CCACCACACCATCTTTTGCTCGTGTTTCCTCATCCTCTCTGCCTGCCCCT
AACCCTGACCCCAACCCTAACCCTAAACCTATACCTAATCCCTGCCTTTC
TTTGACCCCCAAACAACAACGCCCACTCCCACGGCCCACACCCAACGGCC
CTGGTCCTTCCCCTCGTCACCAGTCAATATCCATGGGAAGTGATGGTTCC
GAGGCCACCCGAGAGTCCGTGAGAGATGCTGTCAGAGAGCACCGCCGGAG
CTACACCAGGTGTGTGTTGGGTTTGGAGTTGGGTTTGGGTAAGGGTCGGA
GTTAGGATGAGAGTTTGGGTGTTGGGTGTTCGGGTGTTGTGTTGTGGTTG
TTTCTTTTCATTTGCTTGTTTGCGACCCGTTTTTTCTAGAGTTTTTTGTT
CGTGTGTGTTTATTTGAACGTAAAAATTGTATAGCGGTGTGCTATGGCAT
GCGATTGTTGACCGGGTTGTTAGCTGCTCTTTTTAGAGAGTCGTTAGATA
ACACTGCGGCCCTCTGGTGTACTCCAACCTGTAGCTCTACAGTACAGCAC
TTTTTACGACGCCTTGCTTCTTTCGCACCACCCCCATCCACCCACTCAAT
TCATGTGCCCCCTCTTCTTCTGGCTGCCGCTTACCCCTAACTCGGCTTAG
CTCAACTCATGAAATCCCTATTTTGTGAATAGCACTTCTGTGAGCAAAAT
ACGTGAGTACTTTTCTTAAGCCCCCCCCAAAACATCAAACCTGCTGTATT
GTAGATCACGATCGAGGGACAGAGGGCGTCCAAGGACTATCGGCCACGGG
GCCAGCCGAGGGAGTGCGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig986:21392..24861-

>mRNA_D-mesarthrocarpus_Contig986.8.1 ID=mRNA_D-mesarthrocarpus_Contig986.8.1|Name=mRNA_D-mesarthrocarpus_Contig986.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=420bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig986:21392..24861- (Discosporangium mesarthrocarpum MT17_79)
GCAGAGAGCGGGGAGCCAACCCCAGTGGCGATACCTCGCCCGCTGCACCC
ACTGCTGGCAGCAGCTTCACCCCTGAGCTGCGGTTCCATGAGTGACTCGT
ACAACGACGCAACCCCTACACCTACTCCTACGGCAAAGCGCAACATCACA
CTCTGGGTGCCTGGGGTGGGCCTGCAGGCGGGGATGTCGACACAGATGCT
GAAGGAGAAGGTTGATGCCATCACTCCAAGCAGGAATGGCAGCGAAAAAA
ACCCGGCACAGAACGACAGGTCAATATCCATGGGAAGTGATGGTTCCGAG
GCCACCCGAGAGTCCGTGAGAGATGCTGTCAGAGAGCACCGCCGGAGCTA
CACCAGATCACGATCGAGGGACAGAGGGCGTCCAAGGACTATCGGCCACG
GGGCCAGCCGAGGGAGTGCG
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