mRNA_D-mesarthrocarpus_Contig985.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig985.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig985.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig985.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig985contigD-mesarthrocarpus_Contig985:20629..23846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1022
Hectar predicted targeting categoryother localisation
Exons6
Cds size1020
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig985.5.1prot_D-mesarthrocarpus_Contig985.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig985 20629..23846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791136.2300513-CDS-D-mesarthrocarpus_Contig985:20628..208111680791136.2300513-CDS-D-mesarthrocarpus_Contig985:20628..20811Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig985 20629..20811 +
1680791136.2442899-CDS-D-mesarthrocarpus_Contig985:21214..213161680791136.2442899-CDS-D-mesarthrocarpus_Contig985:21214..21316Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig985 21215..21316 +
1680791136.2601185-CDS-D-mesarthrocarpus_Contig985:21702..217921680791136.2601185-CDS-D-mesarthrocarpus_Contig985:21702..21792Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig985 21703..21792 +
1680791136.274122-CDS-D-mesarthrocarpus_Contig985:22267..226301680791136.274122-CDS-D-mesarthrocarpus_Contig985:22267..22630Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig985 22268..22630 +
1680791136.2862313-CDS-D-mesarthrocarpus_Contig985:23191..232811680791136.2862313-CDS-D-mesarthrocarpus_Contig985:23191..23281Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig985 23192..23281 +
1680791136.2983837-CDS-D-mesarthrocarpus_Contig985:23654..238461680791136.2983837-CDS-D-mesarthrocarpus_Contig985:23654..23846Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig985 23655..23846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig985.5.1

>prot_D-mesarthrocarpus_Contig985.5.1 ID=prot_D-mesarthrocarpus_Contig985.5.1|Name=mRNA_D-mesarthrocarpus_Contig985.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=340bp
SSVSGNSSPSKWSPSRALASMLPTPPRARRQANKMLRTSLVLAITEASPK
SVEDAMGLAKKGLEHRRFNSGHLVISLKVVQKLDGKSVSKNCMQEGSGEL
MFVELGNSEEGSILNPLRKFMTSIKIDDGSVGEPPLSPQSRFTGDRLSDL
IGSMVNEEQGTPILRDGKIQSASRMQSVEIRQGGSGSCGRGRGAIRGKGK
GKGKGTESSDVNTKVEGLRSEGLAVSLLVTMRSGMEEYAEQCSILQVLTK
ATRATRGGGGKDYPPLAVNKNTTINRMFTNLGRGGKREKDEEVEHGVANS
KLQPLPNPSAPPMSSPESSNSSWRSQEQSPPYRPVGGGGV
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mRNA from alignment at D-mesarthrocarpus_Contig985:20629..23846+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig985.5.1 ID=mRNA_D-mesarthrocarpus_Contig985.5.1|Name=mRNA_D-mesarthrocarpus_Contig985.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3218bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig985:20629..23846+ (Discosporangium mesarthrocarpum MT17_79)
TCATCCGTTTCTGGGAATTCGTCACCATCTAAGTGGTCCCCATCGCGAGC
GTTAGCGTCAATGCTCCCGACTCCCCCAAGGGCTCGAAGGCAGGCCAACA
AAATGCTGCGGACTTCCCTAGTTCTGGCCATTACGGAGGCATCACCTAAA
AGCGTCGAGGATGCGATGGGTCTTGCGAAAAAGGTCCTGTGACTTTGTTG
GGTGATGATGTGCAAAGGGGAAAAACTTGCTAACCAGAGTTTATGGCAGA
GGGGGTCGGGGTCAGCCATCTGTTGGTTAACCGTTTTTGTTGTGCGGAGT
TGCTCACGTTGTCCCGTCCAGGCAAAGGGTTGGCGTGACATGCTCTGATA
CCTTATGAGGCATGTGTATTCAACTGTGCACAACCAGTTGGGTTTGGAAG
TGCTCCTGGCCTTCCTTCTGCAGTGATGAAGCATTCAATTGACGATTCAG
CTTAGCTGTTAAATGCCAAGCACACATTTCTATGTTCACTTTGACAAGCC
GTTTGTGCCTACAGTGGGAGAGGGTAGCAAGAGAACATTTGGGACCCCAA
CATCTTCCGTCACTGGTTTGTTCCCTGCGTTTGCAGGGTCTGGAGCACCG
TCGTTTCAATTCAGGTCATCTGGTTATCTCCTTGAAGGTGGTGCAGAAAT
TGGATGGCAAGAGTGTGTCGAAGAATTGCATGCAGGAGGTGAGTCCTTCC
ATCAATCAGGCATTAATGTGTTGGTTTGTTTAGTTCTTCTATTGGGTCAC
AGAGCAGTGATTGAGGCAGCCCGGTGCGTCAGGATTTGTTTTATTTGGCA
CACCTTAAGTATGTATATATCTGTAGAATGAAGTCAGATTGCCTTCTATC
ACAGCACCCTTGTACTCTGTGTGTGGCAAGCAAAGCAAGTCTGTTGTGTG
CAATAAGGTAACCGGGTAAGGCTTAAAGCCCCTCAAAAGATTGTGAATAT
TTTTGTTTTTCTGCTTGTTAGGGCTCTTGAGCTCTGGAGCTTCACTTTGA
CTGATGTATCCCACCCTCAGCTACCTGTGCCAATGTCATCCTAATCTATC
ACTCCTGGCAAAACCTTTGAGAAGGGATCTGGTGAGTTGATGTTTGTGGA
GTTGGGCAACTCTGAGGAGGGCAGCATCCTGAACCCCCTGCGAAAATTTA
TGACATCAATTAAGGTGAGGTTGTCACTTTGAAGTTGGCTATATTCTGGA
GTAACCCAGTCACAATGCAAGGGGGACAGCCTCTTTGTGAACAGTGCTGG
GGTGAAGTTGACTGAATCTTGTAACAAGGTGTTGGAAATATGGATTTTGT
TTTCGAGGTTAGAGGTATCCATGCTTCGCTTGCACCTCCCCAACATGCAT
ACAAACCACTCCGCAACCAGCCAGGGGTTGTGGGAACACGTCATGAGTTG
TCTGTGCCGTGGACTCCTCTTGGTGTGAAAGGTATACCACAACAAAGTGG
ACATGGTGAAACAGAGGAAGACATGTCACTCCGGTGTGAAAACTAACCCT
AACCCTAACCTTAACCCTAAGGCCCTTCCACAAACAAACAGCGGAAGGAG
AAAGAGGATGACTCGGTGACATCAGGGTTTCCGGCCTCTGTGACCTCTAC
ACCTTTCCACACACCCCGCCTGCCTGCCCTCTCCCCCAGATTGATGACGG
CAGTGTTGGGGAGCCACCATTGAGCCCCCAGTCTCGTTTTACTGGAGACA
GGTTGTCGGACCTTATCGGGTCAATGGTGAATGAAGAGCAAGGTACCCCA
ATTCTGAGAGATGGCAAAATCCAGAGTGCCTCAAGGATGCAGAGTGTTGA
GATCAGACAGGGAGGTTCTGGATCATGTGGGAGGGGGAGGGGGGCCATAA
GAGGAAAGGGAAAGGGAAAGGGAAAGGGGACGGAGAGTTCAGATGTGAAC
ACGAAGGTAGAGGGTCTGAGGTCGGAGGGCTTGGCGGTGTCACTGCTGGT
CACGATGAGATCTGGGATGGAGGAGTACGCAGAGCAGTGTTCCATCCTTC
AGGTGAGATTTTTTGCAAGAGCCTGGGACAGGACGAGAGGTGGTGCTTGA
GACAAGGCACGCATCCCTATGGCGATGGGTAAGGGCCAGGCTTGGCCTTA
AGTAGTATTGGATCTGTGGTGTGTACTCGGCACAAGTACATGATAGGACT
GTCACAATGAGCACGTGGCGAGAACTTATGGTTGTGTTTCAGCACACAGG
GTGTCCTTTGAAGTGCTCTCCGTGCCTGCCTCCCGCAAGGCCTCGTAGAA
GGTGTGCCGCGGTGTGGTACATGTGGGCTCAAATGTATTGGTGATCGAAG
GGCGCCGTCACTCAACTCTACGTTGCTGAAGATTGGTGCCGTCGTGCCAT
CAGTGCATGAAGGCATGGCGGCACTGTTTAGTGGTGCAAATATCTCCCTA
GACTCTGCATATCGTAGCAACGCCAAACTCTGCTGCAGTGGTCCCTTACC
TCCAATCCCAGGCTCTGGCGATCCCCCCTGTCCCCAGCTCCCCCTTCCAG
CCCGACGACGTCTGCACCTCCCCGTTGACTTGATATACTCGTTTCACCAC
TCCATGGGTGCAGGTCCTCACGAAAGCCACACGGGCAACCCGAGGTGGTG
GGGGTAAGGACTATCCTCCCCTGGCCGTGAACAAGAACACCACCATCAAC
AGGGTGAGCTCTGTTTCTGGGGGGAGGGGGGAGGGTCGTGGTGTCAGCTT
TTCTTTGCCGATCTGGTTTGTGAGGGCTCAGCTACAGCACCAGCCATGAG
GGTTTCGGGGTGGCATGATGACATGCATGCTGTCTGTTCCGGAATAGGAC
TGACTTATTGTTGGGGAATGCTCCACGTAGGTTGAATACAAAACAACCAC
CTGCCAGTCATAATACACCCAGACCTGTCTGTGAAGAACATTGGTTTCTC
CCAAATCCCCTAACACATATTGCCTGAACCCCATGACACTTGCAATGGTT
TATCACTTAAGCGCTATCCCCACCCGAAACCACGCCTGCCAGTTCCAATA
CCCGCTCTACCCTGACCACCCACCAGATGTTCACCAACCTGGGGAGGGGA
GGGAAGAGGGAGAAGGACGAGGAAGTGGAGCATGGGGTGGCCAACTCCAA
ACTCCAACCGCTGCCCAACCCTTCAGCACCCCCCATGTCATCCCCTGAGT
CCTCCAACTCTTCTTGGAGGAGTCAGGAGCAATCCCCCCCGTATCGGCCT
GTAGGGGGTGGGGGTGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig985:20629..23846+

>mRNA_D-mesarthrocarpus_Contig985.5.1 ID=mRNA_D-mesarthrocarpus_Contig985.5.1|Name=mRNA_D-mesarthrocarpus_Contig985.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1020bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig985:20629..23846+ (Discosporangium mesarthrocarpum MT17_79)
TCATCCGTTTCTGGGAATTCGTCACCATCTAAGTGGTCCCCATCGCGAGC
GTTAGCGTCAATGCTCCCGACTCCCCCAAGGGCTCGAAGGCAGGCCAACA
AAATGCTGCGGACTTCCCTAGTTCTGGCCATTACGGAGGCATCACCTAAA
AGCGTCGAGGATGCGATGGGTCTTGCGAAAAAGGGTCTGGAGCACCGTCG
TTTCAATTCAGGTCATCTGGTTATCTCCTTGAAGGTGGTGCAGAAATTGG
ATGGCAAGAGTGTGTCGAAGAATTGCATGCAGGAGGGATCTGGTGAGTTG
ATGTTTGTGGAGTTGGGCAACTCTGAGGAGGGCAGCATCCTGAACCCCCT
GCGAAAATTTATGACATCAATTAAGATTGATGACGGCAGTGTTGGGGAGC
CACCATTGAGCCCCCAGTCTCGTTTTACTGGAGACAGGTTGTCGGACCTT
ATCGGGTCAATGGTGAATGAAGAGCAAGGTACCCCAATTCTGAGAGATGG
CAAAATCCAGAGTGCCTCAAGGATGCAGAGTGTTGAGATCAGACAGGGAG
GTTCTGGATCATGTGGGAGGGGGAGGGGGGCCATAAGAGGAAAGGGAAAG
GGAAAGGGAAAGGGGACGGAGAGTTCAGATGTGAACACGAAGGTAGAGGG
TCTGAGGTCGGAGGGCTTGGCGGTGTCACTGCTGGTCACGATGAGATCTG
GGATGGAGGAGTACGCAGAGCAGTGTTCCATCCTTCAGGTCCTCACGAAA
GCCACACGGGCAACCCGAGGTGGTGGGGGTAAGGACTATCCTCCCCTGGC
CGTGAACAAGAACACCACCATCAACAGGATGTTCACCAACCTGGGGAGGG
GAGGGAAGAGGGAGAAGGACGAGGAAGTGGAGCATGGGGTGGCCAACTCC
AAACTCCAACCGCTGCCCAACCCTTCAGCACCCCCCATGTCATCCCCTGA
GTCCTCCAACTCTTCTTGGAGGAGTCAGGAGCAATCCCCCCCGTATCGGC
CTGTAGGGGGTGGGGGTGTG
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