mRNA_D-mesarthrocarpus_Contig9837.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9837.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig9837.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9837.4.1 vs. uniprot
Match: A0A6H5K5G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.210e-32
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = 3 
Query:   96 VLVMQPGWFVTLPRLFPGDMETKRHR-LPIKMLWELEAKSIPDSPQMVSVEMRPAPGYIDFFAKLIPPEMLHFQWPLRRWETLRSAGDSRCALEEAAAAADSVGLVPVPPNSALWQVYNNLQERTMEGLINPNT 494
            VLV+QPGW VTLP  F G M+ KR R +P+KMLWEL A+ +P +   V VEMR  PGY+DF A+++P +ML F+W LR WETL+   +SR  LEEAAAA   +GLVP+P  S+L  VY++   R     I  N+
Sbjct:  674 VLVLQPGWGVTLPPYFLGMMDPKRPRSVPVKMLWELRAEPLPGAADSVLVEMRQVPGYLDFLAEIMPADMLKFRWSLRCWETLQGKNESRALLEEAAAALSHLGLVPMPLGSSLRLVYDDFVARRAVAAIGVNS 807
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9837.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5G3_9PHAE1.210e-3251.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9837contigD-mesarthrocarpus_Contig9837:2751..4135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size584
Hectar predicted targeting categoryother localisation
Exons3
Cds size579
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791135.285977-UTR-D-mesarthrocarpus_Contig9837:2750..27551680791135.285977-UTR-D-mesarthrocarpus_Contig9837:2750..2755Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9837 2751..2755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791135.3005123-CDS-D-mesarthrocarpus_Contig9837:2755..29351680791135.3005123-CDS-D-mesarthrocarpus_Contig9837:2755..2935Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9837 2756..2935 +
1680791135.3108513-CDS-D-mesarthrocarpus_Contig9837:3326..34401680791135.3108513-CDS-D-mesarthrocarpus_Contig9837:3326..3440Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9837 3327..3440 +
1680791135.3280602-CDS-D-mesarthrocarpus_Contig9837:3850..41351680791135.3280602-CDS-D-mesarthrocarpus_Contig9837:3850..4135Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9837 3851..4135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9837.4.1prot_D-mesarthrocarpus_Contig9837.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9837 2756..4135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9837.4.1

>prot_D-mesarthrocarpus_Contig9837.4.1 ID=prot_D-mesarthrocarpus_Contig9837.4.1|Name=mRNA_D-mesarthrocarpus_Contig9837.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=193bp
MFSGVGARAPSHSVVGPSVGGGGGSQGKGTVLVMQPGWFVTLPRLFPGDM
ETKRHRLPIKMLWELEAKSIPDSPQMVSVEMRPAPGYIDFFAKLIPPEML
HFQWPLRRWETLRSAGDSRCALEEAAAAADSVGLVPVPPNSALWQVYNNL
QERTMEGLINPNTLHVSGPKESHSVPSVAAAVLRDGGYLGVVG
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mRNA from alignment at D-mesarthrocarpus_Contig9837:2751..4135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9837.4.1 ID=mRNA_D-mesarthrocarpus_Contig9837.4.1|Name=mRNA_D-mesarthrocarpus_Contig9837.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1385bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9837:2751..4135+ (Discosporangium mesarthrocarpum MT17_79)
GGCTTATGTTCTCTGGAGTGGGGGCTCGGGCGCCTAGTCATTCGGTGGTT
GGGCCGTCTGTGGGGGGTGGGGGTGGGAGTCAGGGCAAGGGCACAGTGCT
GGTGATGCAGCCGGGGTGGTTTGTGACGCTCCCACGGTTGTTCCCTGGCG
ATATGGAGACCAAGCGTCACAGGCTGCCAATAAAGGTGATTTCGTTCTCA
AGTTTGATGAGTGACCCGTGCTGGAGAACGGCGTAGTGGGCCTTGCCTCT
TTGTTCTTGCAGCCTTTTAGATGAGCTTGGTGGTATTCAATAGTGAGAAA
GCGTCGGATAGGAACGTGTCTGCGGGAGGGGTGATGGAGAGGGAGCATGG
CGGGGCATGGCAGCGCTGGGTGGGGTGGGGTGGGGTGGGGTGGGGTGGTT
ATTTTTTGGTAGGTCGGCTTGGGGTCCCTGTGTCTGCTGGGAGGCAGGGA
TGGTACCTGTCGGCTGGAAAATGAGTGATTTGCTGATTTCCGTTTGCTGA
TTTCCTGTGCTGCAATACATGTCCATTGATCCCTCCATTTCTCCTCTGCG
GCTGCCGCTGGGTGTATTGGTCTCAGATGCTGTGGGAGCTGGAAGCCAAG
AGCATCCCTGATTCTCCGCAGATGGTATCGGTGGAGATGCGCCCTGCACC
CGGGTACATTGACTTCTTCGCCAAGCTCATCCCCCCAGAGGTGACTGCCT
TTATGCTGCTCTTTCAGTTCTTGTCACAGAGAGATGCGCAACTTTTGTGA
TTTCTGGGTGTGTCCTGTCTTGCTTACTGACTCCTCTGGATTTAGACGAC
GACCTGGTTTGAAAGAACTGTGGGTTGCTTCACAACGCTCATGCAGAAGC
ATGACGCCTACATGTGTGAGATATGTGACAAGCAGGAATCTTCCCACGCC
TGACCTTTTTTGTGATGCACACCCTATTTACTTGGCTGCGTCCCTTCGAA
TGAGGAAGGTCAAAGAAGAGAGGTTGTGCCCCTTGTGCTCATCTCATGTT
TCATCAGGCCCACCAGCCCCAGCTCCACACCATCCACCCACCCACTCAAC
CCCTGTCCCCTCCCACCCTGCTTTCCATGCCATCCTCTTCATGTGTATAG
ATGCTCCACTTCCAGTGGCCCCTCCGTCGCTGGGAGACCCTCCGGTCTGC
AGGTGACAGCCGCTGTGCCCTGGAGGAGGCGGCCGCTGCAGCAGACTCAG
TGGGGCTGGTGCCCGTCCCCCCAAACTCAGCCCTCTGGCAGGTTTACAAC
AACCTCCAGGAGAGGACGATGGAGGGATTGATAAACCCAAACACCCTGCA
CGTGAGTGGGCCCAAGGAGTCCCATTCAGTACCTTCAGTGGCCGCGGCCG
TCCTCAGGGATGGGGGGTACTTGGGTGTTGTGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9837:2751..4135+

>mRNA_D-mesarthrocarpus_Contig9837.4.1 ID=mRNA_D-mesarthrocarpus_Contig9837.4.1|Name=mRNA_D-mesarthrocarpus_Contig9837.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=579bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9837:2751..4135+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTCTCTGGAGTGGGGGCTCGGGCGCCTAGTCATTCGGTGGTTGGGCC
GTCTGTGGGGGGTGGGGGTGGGAGTCAGGGCAAGGGCACAGTGCTGGTGA
TGCAGCCGGGGTGGTTTGTGACGCTCCCACGGTTGTTCCCTGGCGATATG
GAGACCAAGCGTCACAGGCTGCCAATAAAGATGCTGTGGGAGCTGGAAGC
CAAGAGCATCCCTGATTCTCCGCAGATGGTATCGGTGGAGATGCGCCCTG
CACCCGGGTACATTGACTTCTTCGCCAAGCTCATCCCCCCAGAGATGCTC
CACTTCCAGTGGCCCCTCCGTCGCTGGGAGACCCTCCGGTCTGCAGGTGA
CAGCCGCTGTGCCCTGGAGGAGGCGGCCGCTGCAGCAGACTCAGTGGGGC
TGGTGCCCGTCCCCCCAAACTCAGCCCTCTGGCAGGTTTACAACAACCTC
CAGGAGAGGACGATGGAGGGATTGATAAACCCAAACACCCTGCACGTGAG
TGGGCCCAAGGAGTCCCATTCAGTACCTTCAGTGGCCGCGGCCGTCCTCA
GGGATGGGGGGTACTTGGGTGTTGTGGGG
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