mRNA_D-mesarthrocarpus_Contig9836.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9836.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9836.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: A0A6H5L3F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.250e-23
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    7 LPTP---GDMRCIQERQLRHPASA----FAVSP-PCRHGFPQAFGFYPSSHRISSGLFRLSCPMLVQAIDTLEKE 207
            +PTP   GD+RCI+ERQLRH A A      VSP PCRHGFPQAF F P  H++SSGLFRLSCP+LVQAID LE E
Sbjct:  129 VPTPATEGDLRCIEERQLRHKAGASSRSMGVSPNPCRHGFPQAFAFDPCGHKVSSGLFRLSCPLLVQAIDLLEDE 203          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: A0A6S9FG26_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FG26_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.180e-21
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   10 PTPGDMRCIQERQLRHPASAFAVSPPCRHGFPQAFGFYPSSHRISSGLFRLSCPMLVQAIDTLEKE 207
            PTP D+ CI+ RQL H A+ F+V   C++GFPQAFGF+P  H++SSGLFRLSCP+LV+A+D  E E
Sbjct:   65 PTPEDIDCIENRQLEHGANIFSVGQRCKYGFPQAFGFHPVEHKVSSGLFRLSCPLLVRAVDEWEAE 130          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: A0A7S2HF12_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF12_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.480e-20
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    7 LPTPGDMRCIQERQLRHPASAFAVSPPCRHGFPQAFGFYPSSHRISSGLFRLSCPMLVQAIDTLEKE 207
            +PT  D+ CI+ RQL H A+ F V   C++GFPQAFGF+P  H++SSGLFRLSCP+LV+AID  E E
Sbjct:   34 VPTLSDINCIENRQLEHSANIFFVGKRCKYGFPQAFGFHPVEHKVSSGLFRLSCPLLVKAIDEWEGE 100          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: A0A7S0BWE2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWE2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.300e-18
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   10 PTPGDMRCIQERQLRHPASAFAVSPPCRHGFPQAFGFYPSSHRISSGLFRLSCPMLVQAIDTLE 201
            PT  D+ CI + Q+ HP  AF++   C HG+PQA+G +P  ++IS GLFRL+CPMLVQAID  E
Sbjct:   34 PTKSDIDCIHQHQIHHPIQAFSIGQKCTHGYPQAYGNHPCEYKISGGLFRLTCPMLVQAIDEWE 97          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: A0A7S2PD55_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PD55_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.330e-16
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    7 LPTPGDMRCIQERQLRH---PASAFAVSPPCRHGFPQAFGFYPSSH-RISSGLFRLSCPMLVQAIDTLE 201
            LPT  D++ IQERQ+ H   P+    VS PCRHGFPQAFGF+P+   ++ SGLFRLSCP+LVQ ID  E
Sbjct:  102 LPTEQDLQTIQERQVCHKLEPSQVTCVSSPCRHGFPQAFGFHPTKGPKLVSGLFRLSCPLLVQQIDEWE 170          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: D8LLL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1
Query:   76 VSP-PCRHGFPQAFGFYPSSHRISSGLFRLSCPMLVQAIDTLEKE 207
            VSP PCRHGFPQAF F P  H++SSGLFRLSCP+LVQAID LE E
Sbjct:    3 VSPNPCRHGFPQAFAFDPCGHKVSSGLFRLSCPLLVQAIDLLEDE 47          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: K8YZM2_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YZM2_NANGC)

HSP 1 Score: 72.0 bits (175), Expect = 3.890e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 PRLPTPG---DMRCIQERQLRHPAS-AFAVSPPCRHGFPQAFGFYPSSHRISSGLFRLSCPMLVQAIDTLEKE 207
            P  PTP    D+ CI++RQL HP + A      C HGFPQAF F+P+    +SGLFRLSCP+LV+A+D  E +
Sbjct:  107 PFRPTPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQ 179          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: A0A7S2NAA6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NAA6_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 3.140e-11
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   10 PTPGDMRCIQERQLRHPASAFA-VSPPCRHGFPQAFGFYPSSH--------------RISSGLFRLSCPMLVQAIDTLEKE 207
            P+  D++ I+ RQ+ H  S+       C+HGFPQAF F P                 RI SGLFRLSCP+LV+A+D  E+E
Sbjct:    4 PSEEDLKVIENRQIGHKVSSIVGCGARCKHGFPQAFAFDPIERAPLILNGAVSGRKSRIESGLFRLSCPLLVKAVDEWERE 84          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: A0A7S4MDR4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MDR4_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 5.180e-9
Identity = 32/80 (40.00%), Postives = 40/80 (50.00%), Query Frame = 1
Query:   10 PTPGDMRCIQERQLRHPASAFAVSPPCRHGFPQAFGFYPSSHR--------------ISSGLFRLSCPMLVQAIDTLEKE 207
            P+  D   I+ R L H  S  AV   CRHG PQAF + P +                +  GLFRLSCP+LV+A+D  E E
Sbjct:   12 PSAQDFAVIEGRHLGHAVSMIAVGRRCRHGVPQAFVWNPQARHSRAASDGKARERFPLEGGLFRLSCPLLVKAVDEWEAE 91          
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Match: A0A7S0L8X3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L8X3_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 3.740e-8
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   19 GDMRCIQERQL-RHPASAFAVSPPCRHGFPQAFGFYP-----SSHRISSGLFRLSCPMLVQAIDTLEKE 207
            GD   +  RQ  ++ ++A+A+ P CRHG+PQAF + P      +  I +GLFRLSCP+LV+AID  E E
Sbjct:   74 GDELHVLHRQTGQNLSNAYALGPRCRHGYPQAFMWDPMPVERKAVPIDAGLFRLSCPLLVKAIDEWESE 142          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9836.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L3F4_9PHAE9.250e-2368.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S9FG26_9STRA3.180e-2160.61Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2HF12_9STRA1.480e-2059.70Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0BWE2_9STRA3.300e-1854.69Hypothetical protein (Fragment) n=2 Tax=Proboscia ... [more]
A0A7S2PD55_9STRA2.330e-1659.42Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
D8LLL9_ECTSI2.850e-1477.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8YZM2_NANGC3.890e-1350.68Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S2NAA6_9EUKA3.140e-1141.98Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S4MDR4_9EUKA5.180e-940.00Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A7S0L8X3_9EUKA3.740e-846.38Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9836contigD-mesarthrocarpus_Contig9836:287..951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLL9
PFAMsDUF501
Model size207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.37e-15
EggNOG OGs2C2QW@1|root,2SDB4@2759|Eukaryota
DescriptionProtein of unknown function (DUF501)
Cds size183
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791135.1081057-CDS-D-mesarthrocarpus_Contig9836:286..4011680791135.1081057-CDS-D-mesarthrocarpus_Contig9836:286..401Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9836 287..401 -
1680791135.1277008-CDS-D-mesarthrocarpus_Contig9836:859..9271680791135.1277008-CDS-D-mesarthrocarpus_Contig9836:859..927Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9836 860..927 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791135.1378615-UTR-D-mesarthrocarpus_Contig9836:927..9511680791135.1378615-UTR-D-mesarthrocarpus_Contig9836:927..951Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9836 928..951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9836.2.1prot_D-mesarthrocarpus_Contig9836.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9836 287..927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9836.2.1

>prot_D-mesarthrocarpus_Contig9836.2.1 ID=prot_D-mesarthrocarpus_Contig9836.2.1|Name=mRNA_D-mesarthrocarpus_Contig9836.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=61bp
MRCIQERQLRHPASAFAVSPPCRHGFPQAFGFYPSSHRISSGLFRLSCPM
LVQAIDTLEKE
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mRNA from alignment at D-mesarthrocarpus_Contig9836:287..951-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9836.2.1 ID=mRNA_D-mesarthrocarpus_Contig9836.2.1|Name=mRNA_D-mesarthrocarpus_Contig9836.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=665bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9836:287..951- (Discosporangium mesarthrocarpum MT17_79)
CCACGACTACCGACGCCGGGAGATATGCGATGTATCCAGGAGCGACAATT AAGGCATCCAGCATCTGCCTTTGCCGTGTCCCCGCCCTGCAGGTGTGATG CCAATCTGGTTTTCGGGAAGAGGGACGTGGAGAATTAAGTTGTCCAACAG CACAGAGCACTTTAGCACTTGCTTTTTTTCTCGCAGCACTGTACCGTAAT GTGCTTTGAAGTGTTTTTCCTATATAATATATTAGTGACACAGGCTTATT CTTCCTCGGCATGCAGCAGGTACTGTCTCGATAATGGTAACAGGTTTTGA GAGCTCTGTGAGACCATACCTTCGATGGGTTCTTTCTTGCTTTTTCCAAG GGGAGTGTGAGTTGATCAACCCACAGAGCTAAACTCGGTTTTAAGGCTCT ACAGTCTCTCAAAATACTTGTGCGCGTATGCGTAGACCGATTATCCTATC CGAGCAGTGAACCACTTCTCTCAGTTGCCCTGAAAACTGAGCTGTTTCCT CACCGGCGTATGTACACCACTCTCCTCTCCTCCTCTCCCTGGCTGGACAG GCATGGCTTCCCCCAGGCATTTGGTTTCTATCCAAGCAGTCACCGCATAT CCTCAGGCCTTTTCCGCTTGTCCTGCCCCATGCTGGTTCAAGCCATCGAC ACCTTGGAGAAAGAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9836:287..951-

>mRNA_D-mesarthrocarpus_Contig9836.2.1 ID=mRNA_D-mesarthrocarpus_Contig9836.2.1|Name=mRNA_D-mesarthrocarpus_Contig9836.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=183bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9836:287..951- (Discosporangium mesarthrocarpum MT17_79)
ATGCGATGTATCCAGGAGCGACAATTAAGGCATCCAGCATCTGCCTTTGC
CGTGTCCCCGCCCTGCAGGCATGGCTTCCCCCAGGCATTTGGTTTCTATC
CAAGCAGTCACCGCATATCCTCAGGCCTTTTCCGCTTGTCCTGCCCCATG
CTGGTTCAAGCCATCGACACCTTGGAGAAAGAA
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