mRNA_D-mesarthrocarpus_Contig9817.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9817.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9817.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5JJN6_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN6_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.010e-31
Identity = 67/148 (45.27%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            VL +  ++ A++G R FRL A+AS  GL AV+EQ    G+  PL FLS+ T  NE  WS TELE        +   +L  G P  + +DHQPL NL + + EK  RV RW DFL+AY + ++YR G    NADL+SRLP+PA   D++
Sbjct:  110 VLAFPCYEGAISGERPFRLTADASISGLGAVIEQEQRDGSIRPLCFLSRSTFPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLA-EKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEA 256          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.290e-31
Identity = 67/148 (45.27%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            VL +  ++ A++G R FRL A+AS  GL AV+EQ    G+  PL FLS+ T  NE  WS TELE        +   +L  G P  + +DHQPL NL + + EK  RV RW DFL+AY + ++YR G    NADL+SRLP+PA   D++
Sbjct:  110 VLAFPCYEGAISGERPFRLTADASISGLGAVIEQEQRDGSIRPLCFLSRSTFPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLA-EKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEA 256          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5JWI6_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.870e-31
Identity = 67/148 (45.27%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            VL    ++ A++G R FRL A+AS  GL AV+EQG   G+  PL FLS+ T  N   WS TELE        +   +L  GTP  + +DHQPL NL + + +K  RV RW DFL+AY   ++YR G    NADL+SRLP+PA   D++
Sbjct:  200 VLASPCYEGAISGERPFRLTADASISGLGAVIEQGQRDGSIRPLCFLSRSTFENVTRWSSTELEAGAT----KKNRTLFYGTPFEVYSDHQPLRNLGSWA-DKNNRVQRWYDFLSAYTHELKYRPGRENANADLMSRLPLPATKEDEA 342          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.130e-30
Identity = 66/148 (44.59%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            VL +  ++ A++G R FRL A+AS  GL AV+EQ    G+  PL FLS+ T  NE  WS T+LE        +   +L  G P  + +DHQPL NL + + EK  RV RW DFL+AY + ++YR G    NADL+SRLP+PA   D++
Sbjct:  110 VLAFPCYEGAISGERPFRLTADASISGLGAVIEQEQRDGSIRPLCFLSRSTFPNETRWSPTKLEAGAIVWAIKQNRTLFYGIPFEVYSDHQPLRNLGSLA-EKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEA 256          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.870e-30
Identity = 67/148 (45.27%), Postives = 86/148 (58.11%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            VL +  ++ A+ G R FRL+ +AS  GL AV+EQ    GT  PL +LS+ T  NE  WS TELE        +   +L  G P  I +DHQPL NL + + EK  RV RW DFL+AY + + YR G   GNAD +SRLP+P    D S
Sbjct:  265 VLAFPDYEGAITGKRKFRLITDASISGLGAVIEQEQEDGTVRPLCYLSRSTYPNERRWSATELECGAIVWAIKKNRTLFYGIPFQIYSDHQPLRNLESLA-EKNNRVQRWFDFLSAYTYELIYRPGKANGNADCMSRLPLPPMEEDAS 411          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5K4J2_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J2_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.960e-29
Identity = 63/142 (44.37%), Postives = 86/142 (60.56%), Query Frame = 1
Query:   19 FQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            ++ A++G R FRL A+AS  GL AV+EQ    G+  PL FLS+ T+ NE  WS TELE        +   +L  G P  + +DHQPL NL + + EK  RV RW D L+A    ++YR G +  NADL+SRLP+PA   D++
Sbjct:   23 YEGAISGERPFRLTADASISGLAAVIEQEQRDGSIRPLCFLSRSTVPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLA-EKNNRVQRWYDCLSACTNKLKYRPGRDNANADLMSRLPLPATKEDEA 163          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.030e-28
Identity = 65/146 (44.52%), Postives = 82/146 (56.16%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSD 438
            VL +  + AA++G+R FRL  +AS  G  AVLEQ    GT  PL ++S+ TL NE NW ++ LE        +     L G P    TDHQPLL+  +   EK PRV R  DFL+AY F + YRKG     AD LSRLP P   +D
Sbjct:  360 VLAFPDYDAAIDGTRKFRLTTDASISGFGAVLEQPQEDGTVRPLVYISRSTLPNEANWDVSSLECGALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMG-EKKPRVQRMCDFLSAYSFTLSYRKGKENQVADALSRLPQPPTAAD 504          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5L3E9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 9.070e-28
Identity = 63/148 (42.57%), Postives = 86/148 (58.11%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            VL Y  + A  +GSR FRL  +AS DG    LEQ    G+  P+ F+S+ TL +E +W+  +LE  +     +     L GT   I TDH+ L +LA    E   RV RWL+FL AY + ++YRKG++ GNAD LSRLP+ A   D+S
Sbjct:  145 VLVYPDWDAVSDGSRPFRLYCDASKDGFGGTLEQEQPDGSVRPIVFVSRTTLESERHWTPLDLEAGSIVWCVKGLRGYLWGTHFKIFTDHKSLEHLAKVG-ETNARVQRWLEFLTAYSYTLEYRKGSSNGNADFLSRLPIEATERDRS 291          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5KIF5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.240e-26
Identity = 62/148 (41.89%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            VL Y  + A  +GSR FRL  +AS DG    LEQ    G+  P+ F+S+ TL +E +W+  +LE  +     +     L GT   I TDH+ L + A    E   RV RWL+FL AY + ++YRKG+  GNAD LSRLP+ A   D+S
Sbjct:  728 VLVYPDWDAVSDGSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTPLDLEAGSIVWSIKRLRGYLWGTKFRIFTDHKSLEHFAKVG-ENNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRS 874          
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.280e-26
Identity = 62/148 (41.89%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    1 VLGYAHFQAAMNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSITELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRWLDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS 444
            VL Y  + A  +GSR FRL  +AS DG    LEQ    G+  P+ F+S+ TL +E +W+  +LE  +     +     L GT   I TDH+ L + A    E   RV RWL+FL AY + ++YRKG+  GNAD LSRLP+ A   D+S
Sbjct:  556 VLVYPDWDAVSDGSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTPLDLEAGSIVWSIKRLRGYLWGTKFRIFTDHKSLEHFAKVG-ENNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRS 702          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9817.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJN6_9PHAE1.010e-3145.27RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5KAM4_9PHAE3.290e-3145.27RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWI6_9PHAE9.870e-3145.27RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWR4_9PHAE2.130e-3044.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRW3_9PHAE4.870e-3045.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4J2_9PHAE2.960e-2944.37RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L269_9PHAE3.030e-2844.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3E9_9PHAE9.070e-2842.57Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KIF5_9PHAE1.240e-2641.89Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JUZ4_9PHAE1.280e-2641.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9817contigD-mesarthrocarpus_Contig9817:1769..2212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15717966
PFAMsRVT_1,rve
Model size444
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.08e-17
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
DescriptionK02A2.6-like
Cds size414
COG categoryOU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791133.2642968-CDS-D-mesarthrocarpus_Contig9817:1768..21821680791133.2642968-CDS-D-mesarthrocarpus_Contig9817:1768..2182Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9817 1769..2182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791133.2781913-UTR-D-mesarthrocarpus_Contig9817:2182..22121680791133.2781913-UTR-D-mesarthrocarpus_Contig9817:2182..2212Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9817 2183..2212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9817.1.1prot_D-mesarthrocarpus_Contig9817.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9817 1769..2182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9817.1.1

>prot_D-mesarthrocarpus_Contig9817.1.1 ID=prot_D-mesarthrocarpus_Contig9817.1.1|Name=mRNA_D-mesarthrocarpus_Contig9817.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=138bp
MNGSRTFRLVAEASTDGLPAVLEQGDVHGTYHPLYFLSQPTLSNEPNWSI
TELEPWNNYLGHQTFESLLLGTPLNILTDHQPLLNLATQSHEKFPRVHRW
LDFLNAYGFHIQYRKGTNQGNADLLSRLPVPAQPSDKS
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mRNA from alignment at D-mesarthrocarpus_Contig9817:1769..2212-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9817.1.1 ID=mRNA_D-mesarthrocarpus_Contig9817.1.1|Name=mRNA_D-mesarthrocarpus_Contig9817.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=444bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9817:1769..2212- (Discosporangium mesarthrocarpum MT17_79)
GTCCTGGGTTACGCTCACTTCCAAGCCGCTATGAATGGCTCCCGCACATT TCGTTTGGTTGCCGAGGCGAGCACAGATGGTCTTCCTGCTGTCCTAGAGC AGGGTGATGTGCATGGCACCTACCACCCCTTGTACTTCCTCAGTCAACCC ACTTTATCCAACGAGCCTAACTGGTCAATCACGGAACTCGAACCTTGGAA CAATTATCTGGGCCATCAAACGTTTGAGAGCCTACTTTTGGGCACCCCCT TGAACATCTTAACTGATCACCAACCTCTCCTCAACCTAGCCACTCAGAGC CACGAAAAGTTTCCCCGTGTCCATCGCTGGCTCGATTTCCTCAATGCCTA TGGGTTTCACATCCAATATCGCAAAGGTACCAATCAAGGCAATGCAGACC TTTTGTCTCGGCTGCCTGTTCCTGCCCAGCCCTCTGATAAATCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9817:1769..2212-

>mRNA_D-mesarthrocarpus_Contig9817.1.1 ID=mRNA_D-mesarthrocarpus_Contig9817.1.1|Name=mRNA_D-mesarthrocarpus_Contig9817.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=414bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9817:1769..2212- (Discosporangium mesarthrocarpum MT17_79)
ATGAATGGCTCCCGCACATTTCGTTTGGTTGCCGAGGCGAGCACAGATGG
TCTTCCTGCTGTCCTAGAGCAGGGTGATGTGCATGGCACCTACCACCCCT
TGTACTTCCTCAGTCAACCCACTTTATCCAACGAGCCTAACTGGTCAATC
ACGGAACTCGAACCTTGGAACAATTATCTGGGCCATCAAACGTTTGAGAG
CCTACTTTTGGGCACCCCCTTGAACATCTTAACTGATCACCAACCTCTCC
TCAACCTAGCCACTCAGAGCCACGAAAAGTTTCCCCGTGTCCATCGCTGG
CTCGATTTCCTCAATGCCTATGGGTTTCACATCCAATATCGCAAAGGTAC
CAATCAAGGCAATGCAGACCTTTTGTCTCGGCTGCCTGTTCCTGCCCAGC
CCTCTGATAAATCC
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