mRNA_D-mesarthrocarpus_Contig9814.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9814.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9814.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9814.2.1 vs. uniprot
Match: D8LLV3_ECTSI (DUF3730 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLV3_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.430e-8
Identity = 64/222 (28.83%), Postives = 85/222 (38.29%), Query Frame = 1 
Query:   16 QSRRFVGSALACLRWCCPLRGAPHRQLLALVEALFRGGHGVAVEVACVEFALCAGAGGGMATKVASEGAAXXXXXXXXXXXXXXXGGGRTGGDPLYSSWLLGIVQGQAFWNLPPATRLRLLGGFDLMVAGLPSEIAGHAVREVWGRLAAFSGPSGQRGGRAEGXXXXXXXXXXXXXXEGREKPVAHGAPPCGEGLTRGSSHRVECVAEYLNALQRFVARGTR 681
            QS  F  SA+A L +C  LR  PH Q+  ++EALFRGGHGV V+V C+   L       +A K                             +  YS+WL G+     F NLP   +  L+  FD +   LPSEI     +++W  +      S  R    E                 RE  V  G          GSS      A +L+ +   VA GTR
Sbjct: 1499 QSSLFAASAMASLTFCPTLR-IPHPQMAIVIEALFRGGHGVEVQVKCISLGLA------LADK-----------------------------EQAYSTWLRGLFDRPFFVNLPRDVQHHLVAVFDQIFLKLPSEIGKDLAKKLWDTITPRFFTSWSRASGPE-----------------REGVVVDGK--------EGSSQ----AAAFLSGMSTLVAAGTR 1655
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9814.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLV3_ECTSI1.430e-828.83DUF3730 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9814contigD-mesarthrocarpus_Contig9814:2204..4026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1824
Hectar predicted targeting categoryother localisation
Exons1
Cds size1821
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791133.093186-CDS-D-mesarthrocarpus_Contig9814:2205..40261680791133.093186-CDS-D-mesarthrocarpus_Contig9814:2205..4026Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9814 2206..4026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9814.2.1prot_D-mesarthrocarpus_Contig9814.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9814 2206..4026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9814.2.1

>prot_D-mesarthrocarpus_Contig9814.2.1 ID=prot_D-mesarthrocarpus_Contig9814.2.1|Name=mRNA_D-mesarthrocarpus_Contig9814.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=607bp
AGGQTQSRRFVGSALACLRWCCPLRGAPHRQLLALVEALFRGGHGVAVEV
ACVEFALCAGAGGGMATKVASEGAATATPTPWPGPSSSPGGGGRTGGDPL
YSSWLLGIVQGQAFWNLPPATRLRLLGGFDLMVAGLPSEIAGHAVREVWG
RLAAFSGPSGQRGGRAEGEGQGQGQGQGQEQEEGREKPVAHGAPPCGEGL
TRGSSHRVECVAEYLNALQRFVARGTRTGRDGSSGGGSGAGGSGGGGGGG
GAGAVTNKASTTSRSASTSKAPSPVVMAAIVDLTVREILTSFLSAYGRTE
EGGLGFLEPRAPDAPLWDGLVNLLSCLPEGRGLAAVASSGAGSAPAGDTP
AERAIRAFLVGRVAAGMALRSPARSGAVSVTGAGAEGAARMGTGEGLICS
PSGSLGAALRWAARLDTSEDAWVAVRPALMEALGAIAQSTQSAGGGTVSK
KEEGPERPVRARWVASLLEMISLPEFCPLRTALLMCAAAVAWEDPAPCLG
ALTTGHWKQGGAAAVPGGRGGQVREEASWMSGAEERRKTPHQFTWDEKKG
WQAGVVYAMSYAISRVVVGAEEEVLACLFKVVTSGLDRAGGGQRGLEEQA
TTSGARA
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mRNA from alignment at D-mesarthrocarpus_Contig9814:2204..4026-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9814.2.1 ID=mRNA_D-mesarthrocarpus_Contig9814.2.1|Name=mRNA_D-mesarthrocarpus_Contig9814.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1823bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9814:2204..4026- (Discosporangium mesarthrocarpum MT17_79)
GCGGGGGGACAGACTCAAAGCAGACGCTTCGTAGGGTCAGCCCTCGCCTG
CCTGAGGTGGTGCTGCCCCCTCCGCGGGGCACCGCACCGCCAGCTCCTGG
CGCTCGTCGAGGCCCTGTTCCGGGGGGGCCACGGCGTGGCCGTGGAGGTG
GCCTGCGTGGAATTCGCCCTTTGTGCAGGGGCAGGGGGGGGCATGGCCAC
CAAAGTTGCCAGCGAAGGAGCAGCCACAGCCACACCGACTCCGTGGCCAG
GTCCGTCCTCATCTCCTGGGGGGGGGGGAAGGACCGGCGGAGATCCACTG
TATTCCTCCTGGCTCCTGGGCATAGTCCAGGGCCAGGCATTCTGGAACCT
TCCGCCAGCTACACGGCTCCGCCTGTTGGGTGGATTCGACCTCATGGTTG
CCGGCTTGCCCTCCGAGATTGCAGGACACGCAGTAAGGGAGGTCTGGGGG
CGCCTGGCTGCATTTTCAGGCCCATCAGGCCAGAGGGGTGGAAGGGCTGA
GGGGGAGGGCCAGGGCCAGGGTCAGGGTCAGGGTCAGGAACAGGAGGAGG
GTCGGGAGAAGCCTGTAGCCCATGGCGCCCCCCCATGCGGGGAGGGACTC
ACCAGAGGCAGCAGCCACAGGGTGGAATGCGTGGCTGAGTACTTGAATGC
CTTGCAGAGGTTTGTGGCCAGAGGCACCAGGACTGGGCGTGACGGCAGCA
GTGGTGGTGGGAGTGGGGCGGGCGGCAGTGGAGGTGGCGGTGGCGGTGGT
GGTGCTGGAGCAGTCACCAACAAGGCCAGCACCACTTCCCGCTCTGCCAG
CACATCAAAGGCACCTTCTCCAGTGGTCATGGCCGCCATTGTGGATCTAA
CTGTAAGAGAAATACTGACGTCCTTTCTCTCTGCCTATGGGAGGACAGAG
GAAGGGGGTCTCGGCTTCCTGGAGCCCAGGGCCCCCGACGCCCCTCTCTG
GGACGGGCTGGTGAACCTCCTGTCTTGCCTCCCAGAGGGGAGGGGGCTTG
CCGCAGTTGCCTCCAGCGGTGCGGGTTCAGCCCCAGCTGGGGACACGCCA
GCGGAGAGAGCAATAAGAGCATTCCTTGTGGGCCGTGTGGCAGCAGGCAT
GGCACTCCGGAGCCCTGCCAGGTCTGGGGCTGTTTCTGTGACTGGGGCTG
GGGCAGAAGGAGCGGCCAGGATGGGAACGGGAGAGGGGCTTATCTGCTCC
CCCTCCGGGAGCCTTGGGGCTGCCCTCCGGTGGGCCGCACGACTCGACAC
ATCGGAAGATGCATGGGTTGCAGTCCGGCCGGCGCTGATGGAGGCGCTCG
GGGCGATTGCCCAGAGCACCCAGAGTGCGGGGGGGGGCACCGTCAGCAAG
AAGGAGGAAGGCCCGGAGCGACCCGTGAGAGCGCGCTGGGTGGCATCTCT
GCTTGAAATGATCAGCCTGCCCGAGTTTTGCCCCCTGCGGACGGCGCTGT
TGATGTGCGCTGCGGCCGTCGCATGGGAAGACCCTGCCCCGTGCCTCGGG
GCCCTCACGACTGGCCACTGGAAGCAGGGTGGGGCTGCGGCTGTTCCAGG
GGGCAGGGGGGGGCAGGTCAGGGAAGAGGCAAGTTGGATGTCTGGAGCAG
AAGAAAGGCGAAAGACGCCTCATCAGTTTACCTGGGATGAGAAAAAGGGC
TGGCAGGCGGGGGTTGTGTACGCTATGTCCTATGCCATATCCAGGGTTGT
GGTGGGGGCTGAAGAGGAGGTGCTGGCATGCCTGTTCAAGGTTGTGACAA
GCGGGCTCGACAGAGCAGGGGGGGGACAGAGGGGGCTCGAGGAACAGGCT
ACAACCAGTGGTGCTAGAGCCAT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9814:2204..4026-

>mRNA_D-mesarthrocarpus_Contig9814.2.1 ID=mRNA_D-mesarthrocarpus_Contig9814.2.1|Name=mRNA_D-mesarthrocarpus_Contig9814.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1821bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9814:2204..4026- (Discosporangium mesarthrocarpum MT17_79)
GCGGGGGGACAGACTCAAAGCAGACGCTTCGTAGGGTCAGCCCTCGCCTG
CCTGAGGTGGTGCTGCCCCCTCCGCGGGGCACCGCACCGCCAGCTCCTGG
CGCTCGTCGAGGCCCTGTTCCGGGGGGGCCACGGCGTGGCCGTGGAGGTG
GCCTGCGTGGAATTCGCCCTTTGTGCAGGGGCAGGGGGGGGCATGGCCAC
CAAAGTTGCCAGCGAAGGAGCAGCCACAGCCACACCGACTCCGTGGCCAG
GTCCGTCCTCATCTCCTGGGGGGGGGGGAAGGACCGGCGGAGATCCACTG
TATTCCTCCTGGCTCCTGGGCATAGTCCAGGGCCAGGCATTCTGGAACCT
TCCGCCAGCTACACGGCTCCGCCTGTTGGGTGGATTCGACCTCATGGTTG
CCGGCTTGCCCTCCGAGATTGCAGGACACGCAGTAAGGGAGGTCTGGGGG
CGCCTGGCTGCATTTTCAGGCCCATCAGGCCAGAGGGGTGGAAGGGCTGA
GGGGGAGGGCCAGGGCCAGGGTCAGGGTCAGGGTCAGGAACAGGAGGAGG
GTCGGGAGAAGCCTGTAGCCCATGGCGCCCCCCCATGCGGGGAGGGACTC
ACCAGAGGCAGCAGCCACAGGGTGGAATGCGTGGCTGAGTACTTGAATGC
CTTGCAGAGGTTTGTGGCCAGAGGCACCAGGACTGGGCGTGACGGCAGCA
GTGGTGGTGGGAGTGGGGCGGGCGGCAGTGGAGGTGGCGGTGGCGGTGGT
GGTGCTGGAGCAGTCACCAACAAGGCCAGCACCACTTCCCGCTCTGCCAG
CACATCAAAGGCACCTTCTCCAGTGGTCATGGCCGCCATTGTGGATCTAA
CTGTAAGAGAAATACTGACGTCCTTTCTCTCTGCCTATGGGAGGACAGAG
GAAGGGGGTCTCGGCTTCCTGGAGCCCAGGGCCCCCGACGCCCCTCTCTG
GGACGGGCTGGTGAACCTCCTGTCTTGCCTCCCAGAGGGGAGGGGGCTTG
CCGCAGTTGCCTCCAGCGGTGCGGGTTCAGCCCCAGCTGGGGACACGCCA
GCGGAGAGAGCAATAAGAGCATTCCTTGTGGGCCGTGTGGCAGCAGGCAT
GGCACTCCGGAGCCCTGCCAGGTCTGGGGCTGTTTCTGTGACTGGGGCTG
GGGCAGAAGGAGCGGCCAGGATGGGAACGGGAGAGGGGCTTATCTGCTCC
CCCTCCGGGAGCCTTGGGGCTGCCCTCCGGTGGGCCGCACGACTCGACAC
ATCGGAAGATGCATGGGTTGCAGTCCGGCCGGCGCTGATGGAGGCGCTCG
GGGCGATTGCCCAGAGCACCCAGAGTGCGGGGGGGGGCACCGTCAGCAAG
AAGGAGGAAGGCCCGGAGCGACCCGTGAGAGCGCGCTGGGTGGCATCTCT
GCTTGAAATGATCAGCCTGCCCGAGTTTTGCCCCCTGCGGACGGCGCTGT
TGATGTGCGCTGCGGCCGTCGCATGGGAAGACCCTGCCCCGTGCCTCGGG
GCCCTCACGACTGGCCACTGGAAGCAGGGTGGGGCTGCGGCTGTTCCAGG
GGGCAGGGGGGGGCAGGTCAGGGAAGAGGCAAGTTGGATGTCTGGAGCAG
AAGAAAGGCGAAAGACGCCTCATCAGTTTACCTGGGATGAGAAAAAGGGC
TGGCAGGCGGGGGTTGTGTACGCTATGTCCTATGCCATATCCAGGGTTGT
GGTGGGGGCTGAAGAGGAGGTGCTGGCATGCCTGTTCAAGGTTGTGACAA
GCGGGCTCGACAGAGCAGGGGGGGGACAGAGGGGGCTCGAGGAACAGGCT
ACAACCAGTGGTGCTAGAGCC
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