mRNA_D-mesarthrocarpus_Contig981.9.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig981.9.1
Unique NamemRNA_D-mesarthrocarpus_Contig981.9.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig981.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig981contigD-mesarthrocarpus_Contig981:18033..18440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size408
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791132.8251946-UTR-D-mesarthrocarpus_Contig981:18032..180831680791132.8251946-UTR-D-mesarthrocarpus_Contig981:18032..18083Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig981 18033..18083 +
1680791132.8541007-UTR-D-mesarthrocarpus_Contig981:18404..184401680791132.8541007-UTR-D-mesarthrocarpus_Contig981:18404..18440Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig981 18405..18440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791132.8388972-CDS-D-mesarthrocarpus_Contig981:18083..184041680791132.8388972-CDS-D-mesarthrocarpus_Contig981:18083..18404Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig981 18084..18404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig981.9.1prot_D-mesarthrocarpus_Contig981.9.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig981 18084..18404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig981.9.1

>prot_D-mesarthrocarpus_Contig981.9.1 ID=prot_D-mesarthrocarpus_Contig981.9.1|Name=mRNA_D-mesarthrocarpus_Contig981.9.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=107bp
MATCGFFSWPQKSAFRHASKGQAIPSKYYNHILVRHASTSQRACMSLGRC
PSKHTVTKAKQRERLKGSRVCSLIIAVRCFQASTAGACWLSGRPGDSQPK
WSRFPE*
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mRNA from alignment at D-mesarthrocarpus_Contig981:18033..18440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig981.9.1 ID=mRNA_D-mesarthrocarpus_Contig981.9.1|Name=mRNA_D-mesarthrocarpus_Contig981.9.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=408bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig981:18033..18440+ (Discosporangium mesarthrocarpum MT17_79)
CACCGGCCCCAAGGGAAAGGATGACAGGTGTGTTGTGCGCAGTTCTCGGG
GATGGCTACTTGTGGATTTTTCTCGTGGCCGCAGAAGAGTGCATTCAGAC
ATGCTTCCAAAGGTCAGGCAATCCCTTCCAAGTACTACAACCATATACTT
GTACGGCATGCTAGTACCTCACAGAGGGCATGCATGAGTTTGGGGAGATG
CCCCTCGAAACACACGGTAACCAAGGCAAAGCAAAGAGAGAGACTGAAGG
GCTCAAGAGTCTGTAGCTTGATCATTGCTGTGCGGTGCTTTCAAGCATCA
ACAGCTGGAGCATGTTGGCTCAGCGGTAGGCCCGGTGACAGTCAGCCCAA
ATGGTCGAGGTTTCCCGAGTGAATATTCCGTACAGAGAGTATTTCATCTT
CGCAATTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig981:18033..18440+

>mRNA_D-mesarthrocarpus_Contig981.9.1 ID=mRNA_D-mesarthrocarpus_Contig981.9.1|Name=mRNA_D-mesarthrocarpus_Contig981.9.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=321bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig981:18033..18440+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCTACTTGTGGATTTTTCTCGTGGCCGCAGAAGAGTGCATTCAGACA
TGCTTCCAAAGGTCAGGCAATCCCTTCCAAGTACTACAACCATATACTTG
TACGGCATGCTAGTACCTCACAGAGGGCATGCATGAGTTTGGGGAGATGC
CCCTCGAAACACACGGTAACCAAGGCAAAGCAAAGAGAGAGACTGAAGGG
CTCAAGAGTCTGTAGCTTGATCATTGCTGTGCGGTGCTTTCAAGCATCAA
CAGCTGGAGCATGTTGGCTCAGCGGTAGGCCCGGTGACAGTCAGCCCAAA
TGGTCGAGGTTTCCCGAGTGA
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