mRNA_D-mesarthrocarpus_Contig981.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig981.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig981.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig981.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig981contigD-mesarthrocarpus_Contig981:5808..7820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1177181.T9A_01289
PFAMsDUF4336
Model size1347
Max annot lvl135619|Oceanospirillales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.61e-05
EggNOG OGsCOG4221@1|root,COG4221@2|Bacteria,1PWXN@1224|Proteobacteria,1S226@1236|Gammaproteobacteria,1XP3M@135619|Oceanospirillales
DescriptionDomain of unknown function (DUF4336)
Cds size1098
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791132.7507474-UTR-D-mesarthrocarpus_Contig981:5807..60561680791132.7507474-UTR-D-mesarthrocarpus_Contig981:5807..6056Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig981 5808..6056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791132.7689147-CDS-D-mesarthrocarpus_Contig981:6056..61011680791132.7689147-CDS-D-mesarthrocarpus_Contig981:6056..6101Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig981 6057..6101 +
1680791132.785636-CDS-D-mesarthrocarpus_Contig981:6296..65751680791132.785636-CDS-D-mesarthrocarpus_Contig981:6296..6575Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig981 6297..6575 +
1680791132.7969532-CDS-D-mesarthrocarpus_Contig981:7046..78201680791132.7969532-CDS-D-mesarthrocarpus_Contig981:7046..7820Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig981 7047..7820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig981.1.1prot_D-mesarthrocarpus_Contig981.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig981 6057..7820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig981.1.1

>prot_D-mesarthrocarpus_Contig981.1.1 ID=prot_D-mesarthrocarpus_Contig981.1.1|Name=mRNA_D-mesarthrocarpus_Contig981.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=366bp
MMKPGERPFPKEEIKVTKSTILNENGATFFQTGLVADFGFLELLAGPLGL
DKDIDDPDESLSGWFDEGMPFGYDKFYFGTKQRLLAKDKESGRMEFRDAM
QACKEFCENNNKEEFNASDKRPVLGSFTVPAFSLSGGGVLLFSPHYIPPA
MKDELDAMGGVRAAFLPTPFHNMFLTELKTLYPDCLLLGPACCASVAAAA
TAAAAAAATAAATAQAGTEVGGEQGVTATPTTPLAQQKFFDVEDEDHMSN
PQLRAVLDSSGLEPVPMDGLHGSCSAKNGGTGGAAEFALLHRPSGVLATS
DVLYGLGPGAPFMGPGVWAPEWGFLGKLYDEVHLRPALKATPGKAMPAAY
RVMMIAAACQGPKREG
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mRNA from alignment at D-mesarthrocarpus_Contig981:5808..7820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig981.1.1 ID=mRNA_D-mesarthrocarpus_Contig981.1.1|Name=mRNA_D-mesarthrocarpus_Contig981.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2013bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig981:5808..7820+ (Discosporangium mesarthrocarpum MT17_79)
GGAAGGGGAATATAAGACGGCGAGCATTTCATTGAGTAGGCATTACCTTT
AGCTACTGGCAGCAAGTAGGGTTCGGGGGAATTGGGTGATGTGGGCTGAT
GAATTCGTAATATCCATGGCGCGCGCTTACACAGGTTGTGCGCGTTGAAC
ACAGGAATCGTTCCACGAACGGTCCTCCAGAGGAAGCACATTGCATGAGA
TTTAGTTGCACCTCCTTGCCCACTGTTGCTGTTGTCTCCCTAAGCAACGA
TGATGAAACCTGGAGAGAGGCCCTTCCCTAAGGAGGAGATAAAGGTGCAT
ACCTTCAATTCCTAGGAATCTGTGAACTGCATATTTTTGTTGGTGGCCTG
GATCTTTCTTTGTGCATATTATTCCCACACAAACTTGGTTGTGGAAATAG
AATAGAGATGGATGCCTTCGTCTCCATTCTGGCCCATCGAGATCCGTCCT
TCCCACCTTACTTTCTCTTTTCTTTACCTTTCGTAACAGGTAACGAAGAG
CACGATCTTAAATGAAAATGGGGCAACGTTCTTCCAGACAGGGCTGGTGG
CGGACTTTGGATTCCTTGAATTGTTGGCCGGCCCCCTCGGTTTGGACAAG
GACATCGATGACCCGGATGAATCCCTGTCTGGCTGGTTCGACGAGGGCAT
GCCCTTTGGATACGACAAGTTTTACTTTGGCACGAAACAGCGCCTGCTGG
CAAAGGACAAAGAGTCCGGGCGCATGGAGTTCCGCGACGCTATGCAGGCC
TGCAAGGAATTTTGCGAGGTGGGAAAAGTCTCTCATTTGTAACCTTGATT
TGGTGTACGTGCATGAAAATAAGCAAGACAACTTGTTTACTGTAGTCATT
CTCCCCAACCATATGTAATAACCCCCCATCCACGACTAACGTATGCCGCA
ATAAGAATGAAAGCTATTGTTCTCCATGGATATCCTGCGTGGCTACATTG
GTTCGAAAGGAGATTGCTCCACTTCCCAGCAGACGTGACATACACCCCCC
AAATTTTCCTTAGGCGTTCACTCTATTCTCTCCACCTTAATATTTCAAAG
TTGTGCTTTGCCCTCACCTTACCCTGATCAACGGTGACCGCTGGCGCTCG
CTCTCCCCGTCCGAGAATCTCCAACCACCCATCCGGACCCATTTTTTGCC
TACGTATGCTGATGCCTCCATAGTGGCTCTTATCTATCCATTTCTACTCT
TCCCCTTCCACACGTGCCATGTTCCCCTGACATGCGCAGAACAACAACAA
GGAGGAATTCAACGCGAGTGACAAACGCCCGGTCTTAGGCTCCTTTACCG
TCCCCGCCTTCTCCCTATCAGGAGGTGGTGTCCTTCTCTTCTCCCCACAC
TACATCCCCCCAGCCATGAAGGATGAGTTGGACGCCATGGGGGGGGTGCG
AGCGGCCTTCCTCCCCACCCCTTTCCACAACATGTTCCTCACGGAGCTCA
AGACCCTCTACCCAGACTGCCTGCTCCTGGGGCCTGCCTGCTGTGCCTCA
GTGGCCGCTGCTGCCACTGCTGCCGCTGCAGCTGCAGCCACTGCAGCTGC
CACTGCCCAGGCAGGCACGGAAGTTGGGGGAGAGCAGGGGGTGACAGCCA
CCCCCACTACCCCCCTGGCCCAGCAGAAATTCTTTGACGTTGAGGACGAA
GACCACATGAGCAACCCACAGCTCCGGGCAGTGCTAGACAGCTCTGGGCT
GGAGCCGGTTCCTATGGACGGCCTGCATGGGTCCTGCTCTGCCAAGAATG
GGGGGACCGGGGGCGCCGCAGAGTTTGCCCTCCTGCACCGGCCCTCAGGT
GTACTGGCAACGTCAGATGTCCTCTACGGCCTTGGACCCGGGGCGCCCTT
CATGGGCCCAGGGGTGTGGGCCCCGGAGTGGGGCTTCCTGGGGAAGCTCT
ATGATGAGGTGCATCTTCGGCCGGCATTAAAGGCAACGCCTGGCAAGGCT
ATGCCCGCGGCGTACAGGGTGATGATGATTGCGGCTGCATGCCAGGGCCC
CAAACGAGAGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig981:5808..7820+

>mRNA_D-mesarthrocarpus_Contig981.1.1 ID=mRNA_D-mesarthrocarpus_Contig981.1.1|Name=mRNA_D-mesarthrocarpus_Contig981.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1098bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig981:5808..7820+ (Discosporangium mesarthrocarpum MT17_79)
ATGATGAAACCTGGAGAGAGGCCCTTCCCTAAGGAGGAGATAAAGGTAAC
GAAGAGCACGATCTTAAATGAAAATGGGGCAACGTTCTTCCAGACAGGGC
TGGTGGCGGACTTTGGATTCCTTGAATTGTTGGCCGGCCCCCTCGGTTTG
GACAAGGACATCGATGACCCGGATGAATCCCTGTCTGGCTGGTTCGACGA
GGGCATGCCCTTTGGATACGACAAGTTTTACTTTGGCACGAAACAGCGCC
TGCTGGCAAAGGACAAAGAGTCCGGGCGCATGGAGTTCCGCGACGCTATG
CAGGCCTGCAAGGAATTTTGCGAGAACAACAACAAGGAGGAATTCAACGC
GAGTGACAAACGCCCGGTCTTAGGCTCCTTTACCGTCCCCGCCTTCTCCC
TATCAGGAGGTGGTGTCCTTCTCTTCTCCCCACACTACATCCCCCCAGCC
ATGAAGGATGAGTTGGACGCCATGGGGGGGGTGCGAGCGGCCTTCCTCCC
CACCCCTTTCCACAACATGTTCCTCACGGAGCTCAAGACCCTCTACCCAG
ACTGCCTGCTCCTGGGGCCTGCCTGCTGTGCCTCAGTGGCCGCTGCTGCC
ACTGCTGCCGCTGCAGCTGCAGCCACTGCAGCTGCCACTGCCCAGGCAGG
CACGGAAGTTGGGGGAGAGCAGGGGGTGACAGCCACCCCCACTACCCCCC
TGGCCCAGCAGAAATTCTTTGACGTTGAGGACGAAGACCACATGAGCAAC
CCACAGCTCCGGGCAGTGCTAGACAGCTCTGGGCTGGAGCCGGTTCCTAT
GGACGGCCTGCATGGGTCCTGCTCTGCCAAGAATGGGGGGACCGGGGGCG
CCGCAGAGTTTGCCCTCCTGCACCGGCCCTCAGGTGTACTGGCAACGTCA
GATGTCCTCTACGGCCTTGGACCCGGGGCGCCCTTCATGGGCCCAGGGGT
GTGGGCCCCGGAGTGGGGCTTCCTGGGGAAGCTCTATGATGAGGTGCATC
TTCGGCCGGCATTAAAGGCAACGCCTGGCAAGGCTATGCCCGCGGCGTAC
AGGGTGATGATGATTGCGGCTGCATGCCAGGGCCCCAAACGAGAGGGG
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