mRNA_D-mesarthrocarpus_Contig9800.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9800.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9800.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9800.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9800contigD-mesarthrocarpus_Contig9800:348..999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size652
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791132.2993853-UTR-D-mesarthrocarpus_Contig9800:347..4321680791132.2993853-UTR-D-mesarthrocarpus_Contig9800:347..432Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9800 348..432 -
1680791132.3240786-UTR-D-mesarthrocarpus_Contig9800:786..9991680791132.3240786-UTR-D-mesarthrocarpus_Contig9800:786..999Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9800 787..999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791132.311956-CDS-D-mesarthrocarpus_Contig9800:432..7861680791132.311956-CDS-D-mesarthrocarpus_Contig9800:432..786Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9800 433..786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9800.1.1prot_D-mesarthrocarpus_Contig9800.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9800 433..786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9800.1.1

>prot_D-mesarthrocarpus_Contig9800.1.1 ID=prot_D-mesarthrocarpus_Contig9800.1.1|Name=mRNA_D-mesarthrocarpus_Contig9800.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=118bp
MYSTLKYVCSVREKTQSLQCLFCRGSIASMSRNSERFFVHCLSPWHRTEL
FLVRLHCMKLKGHYCTVLCRDQTTFVLCGTASVFFVFFSPNKRCSPFIFC
FLLNFSAGNGYVSGHPP*
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mRNA from alignment at D-mesarthrocarpus_Contig9800:348..999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9800.1.1 ID=mRNA_D-mesarthrocarpus_Contig9800.1.1|Name=mRNA_D-mesarthrocarpus_Contig9800.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=652bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9800:348..999- (Discosporangium mesarthrocarpum MT17_79)
GTTGGGTCTAAAAAAGGGTGGTGTCTTTGTGGATGTGTTGTGTGTGTCCG
TTGTGTTCTATGTAGTTAAGTTTCTACAGTAGGTATCTGTTGTGTTTGTC
TTTGCTGAGTTTCTGTTGTGCTAAATGTGTGGATAGATTTTGTGGGGGCC
CACACAAAGCAAGGGTAGGTCGGTTACCTGAGCTTCTCTTGCACGCCAGT
ACTGTGGTAATTGATGTACAGCACTTTAAAGTATGTATGTAGTGTGAGGG
AGAAGACCCAGAGCTTACAGTGCCTGTTTTGCCGAGGTTCTATAGCATCT
ATGTCGAGAAATTCAGAAAGGTTTTTCGTGCATTGCCTTTCGCCTTGGCA
TAGAACAGAACTCTTTTTGGTGCGGCTCCACTGCATGAAACTCAAGGGGC
ACTACTGTACTGTGCTGTGCCGTGATCAGACGACATTTGTTCTCTGCGGC
ACTGCCTCTGTTTTTTTTGTCTTTTTTTCCCCGAATAAAAGATGCTCTCC
TTTTATTTTTTGTTTCCTTTTGAATTTTTCCGCTGGGAATGGCTATGTCA
GTGGCCACCCACCCTAGAGAGGGGTGGCAGCGGGCACCCTTTTTCAACCA
GGCGCTTTCCTTCTCACACTGTTTCATGCCTTCCAAGCACTACCAAACAC
TT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9800:348..999-

>mRNA_D-mesarthrocarpus_Contig9800.1.1 ID=mRNA_D-mesarthrocarpus_Contig9800.1.1|Name=mRNA_D-mesarthrocarpus_Contig9800.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=354bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9800:348..999- (Discosporangium mesarthrocarpum MT17_79)
ATGTACAGCACTTTAAAGTATGTATGTAGTGTGAGGGAGAAGACCCAGAG
CTTACAGTGCCTGTTTTGCCGAGGTTCTATAGCATCTATGTCGAGAAATT
CAGAAAGGTTTTTCGTGCATTGCCTTTCGCCTTGGCATAGAACAGAACTC
TTTTTGGTGCGGCTCCACTGCATGAAACTCAAGGGGCACTACTGTACTGT
GCTGTGCCGTGATCAGACGACATTTGTTCTCTGCGGCACTGCCTCTGTTT
TTTTTGTCTTTTTTTCCCCGAATAAAAGATGCTCTCCTTTTATTTTTTGT
TTCCTTTTGAATTTTTCCGCTGGGAATGGCTATGTCAGTGGCCACCCACC
CTAG
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