mRNA_D-mesarthrocarpus_Contig979.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig979.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig979.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig979.6.1 vs. uniprot
Match: A0A6H5JRI0_9PHAE (CID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRI0_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 2.790e-60
Identity = 107/183 (58.47%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:    1 LKYDGCGLIRIVGRALGLPVKAMLTTFHLFHHYQWCARSVRSLDFPREDLPAVCLACLLAASKAEDINIKIRMLMPVLERLQPNLPPFEKIILPLGKMPTKQEASLIYSVADYEYKVQLSRGFDLDVDHPTDLIADALVETGAPEEVGEAVFKVLCSRTYTDSTLCLKDDPEGCLCAAFLYAV 549
            L  DGCGLIR +G+A+  PV+ MLT FHLFHHYQWC  SV S  F    LPAVCLACLLAA+KAED N K+ +++  +++L+P LPP E I  PLG+ PT +E      V DYEYK+ LSRGFDL+V HPT+ I+  LV TGAP +VG+  ++VLCSR YTDSTLCL++DP  CLCAA  +A+
Sbjct:  383 LTLDGCGLIRRIGKAMRFPVRVMLTAFHLFHHYQWCG-SVSSFKFSPPKLPAVCLACLLAATKAEDCNAKLEVMLQQMKQLEPILPPLEGIF-PLGQRPTSKE------VVDYEYKLLLSRGFDLEVVHPTEQISAFLVLTGAPLQVGDLAYQVLCSRVYTDSTLCLEEDPLSCLCAAVQFAL 557
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig979.6.1 vs. uniprot
Match: D7FYQ1_ECTSI (CID domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYQ1_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.090e-57
Identity = 104/183 (56.83%), Postives = 131/183 (71.58%), Query Frame = 1 
Query:    1 LKYDGCGLIRIVGRALGLPVKAMLTTFHLFHHYQWCARSVRSLDFPREDLPAVCLACLLAASKAEDINIKIRMLMPVLERLQPNLPPFEKIILPLGKMPTKQEASLIYSVADYEYKVQLSRGFDLDVDHPTDLIADALVETGAPEEVGEAVFKVLCSRTYTDSTLCLKDDPEGCLCAAFLYAV 549
            L  DGCGLIR +G+A+  P + MLT FHLFHHYQWC   V S  F    LPAVCLACLLAA+KAED N K+ +++  + +L+P LPP E I  PLG+ PT +E      V +YEYK+ LSRGFDL+V HPT+ I+  LV TGAP +VG+  ++VLCSR YTDSTLCL++DP  CLCAA  +A+
Sbjct:  379 LTLDGCGLIRRIGKAMRFPGRVMLTAFHLFHHYQWCGL-VSSFKFSPPKLPAVCLACLLAATKAEDCNAKLEVMLHQMRQLEPILPPLEGIF-PLGQRPTSKE------VVNYEYKLLLSRGFDLEVVHPTEQISAFLVLTGAPLQVGDLAYQVLCSRVYTDSTLCLEEDPLSCLCAAVQFAL 553
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig979.6.1 vs. uniprot
Match: A0A836CAK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 8.230e-32
Identity = 69/191 (36.13%), Postives = 104/191 (54.45%), Query Frame = 1 
Query:    1 LKYDGCGLIRIVGRALGLPVKAMLTTFHLFHHYQWCARSVRSLDFPREDLPAVCLACLLAASKAEDINIKIRMLMPVLERLQPNLPPF----------EKIILPLGKMPTKQEASLIYSVADYEYKVQLSRGFDLDVDHPTDLIADALVETGAPEEVGEAVFKVLCSRTYTDSTLCLKDDPEGCLCAAFLY 543
            LK D C +IR +GRA+    +AML+ FH FHH+ W +     + +P  DLPAVCLACL  A KAED   +I  LM + ++++  LPP+             IL  G+ P++ +      V  YEY++  +R F+ +V HP+  + +AL     P  + + V  V  +R YTD  LCL++D    + AA +Y
Sbjct:    2 LKMDACAMIRHIGRAMRYGERAMLSAFHFFHHFHWVSLDAGQM-WPATDLPAVCLACLHLAGKAEDTAFRIDYLMDIADQMKMALPPYGAGTGRGGGSSADILAAGRAPSRAD------VVRYEYRILETRRFNTNVQHPSRRLPEALARARVPAALRDVVPGVFQTRAYTDCDLCLQEDYRAVIAAAIVY 185
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig979.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRI0_9PHAE2.790e-6058.47CID domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYQ1_ECTSI1.090e-5756.83CID domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CAK0_9STRA8.230e-3236.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig979contigD-mesarthrocarpus_Contig979:22988..25170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size561
Hectar predicted targeting categoryother localisation
Exons4
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791130.3413463-CDS-D-mesarthrocarpus_Contig979:22987..231101680791130.3413463-CDS-D-mesarthrocarpus_Contig979:22987..23110Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig979 22988..23110 -
1680791130.3579357-CDS-D-mesarthrocarpus_Contig979:23947..240581680791130.3579357-CDS-D-mesarthrocarpus_Contig979:23947..24058Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig979 23948..24058 -
1680791130.3678885-CDS-D-mesarthrocarpus_Contig979:24305..245821680791130.3678885-CDS-D-mesarthrocarpus_Contig979:24305..24582Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig979 24306..24582 -
1680791130.3882928-CDS-D-mesarthrocarpus_Contig979:25120..251701680791130.3882928-CDS-D-mesarthrocarpus_Contig979:25120..25170Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig979 25121..25170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig979.6.1prot_D-mesarthrocarpus_Contig979.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig979 22988..25170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig979.6.1

>prot_D-mesarthrocarpus_Contig979.6.1 ID=prot_D-mesarthrocarpus_Contig979.6.1|Name=mRNA_D-mesarthrocarpus_Contig979.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=187bp
LKYDGCGLIRIVGRALGLPVKAMLTTFHLFHHYQWCARSVRSLDFPREDL
PAVCLACLLAASKAEDINIKIRMLMPVLERLQPNLPPFEKIILPLGKMPT
KQEASLIYSVADYEYKVQLSRGFDLDVDHPTDLIADALVETGAPEEVGEA
VFKVLCSRTYTDSTLCLKDDPEGCLCAAFLYAVQVN*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig979:22988..25170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig979.6.1 ID=mRNA_D-mesarthrocarpus_Contig979.6.1|Name=mRNA_D-mesarthrocarpus_Contig979.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2183bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig979:22988..25170- (Discosporangium mesarthrocarpum MT17_79)
CTGAAGTATGACGGGTGTGGGCTCATTCGCATCGTTGGAAGGGCTCTGGG
GTGGGTGACAAGACTCTCTGACTGGCTCCTTGGCGCCCTCATCTTTTGTG
ATGATTTGCTTCCTTTTTCCTGTTATTATATGTACGCTTGTTTTGGGTTA
GGGTTAGGATCCTTTTTCCTTCGGGGCTTTCCAGCAAGGCACAGTTTCCC
CCCCTCCCTCCGCCCATTCTGCCTTTGTGCCCCCAAAGATTGGCATGGAA
GCAGGGCAACGAAAAGAGTGGCACTCGGCCCACCTATGAAAGCAGGGTTA
GGGTACACTGACATTCTCTGTTGCCTTGCCTTCCCTCACGTGGGGTGCTA
CACTTCTGCGTGGAACAGCCAACCCAAATGCGGCGTCCTGAAAAGAATAT
GCGTGGGAGGAGGGTGGAGTGCTGGCATTCGATTGGTTCAGTGGTTTTCG
TAGGTGCAAATTCCGTGGTGTGCTTTGTCTGGTGAGGTGGAGGCACAGCA
GAGAGAGATTCCACATATATATATATATATATTTATGAATGATCGCCCTG
CCCCTCCCTCCCTCCCTCCCCCCCTTTGCCCTGCTCAGGCTGCCGGTGAA
AGCAATGCTCACCACATTCCATCTCTTCCACCACTACCAGTGGTGTGCCC
GGTCAGTCAGGAGCCTTGACTTCCCAAGGGAGGACCTGCCCGCGGTGTGC
CTGGCCTGTCTCCTTGCAGCATCCAAGGCTGAGGACATCAACATCAAGAT
ACGGATGCTCATGCCCGTGCTTGAGCGCCTTCAGCCCAACCTCCCCCCGT
TCGAGAAGATCATACTACCCCTGGGGAAGATGCCCACCAAGCAGGAGGCA
AGCCTTATCTATTCCGTTGGTCAGGCAGCTGCCGCAGCTCTCAAGGGTCA
AATAGGGTTTTTTTTTTTGGGAGGGGGGGGGCAACTCTGAGGCCCAACTT
GTGGCCTTGAGTTTTTGACACGGTAACATGCTGTTGCTCTCCCTACCTCA
CTTAATCTACACCTGGTGTTTTGCCGCTTGTGTTCGTGAGTAAAATTCAC
TTACCCCCTCTCTCCCCCTCTCCCTGTTTTTGTTTTTGCCGCTGCTGGAC
CCTGCGGTGAAGGTGGCAGACTACGAGTACAAGGTGCAGCTCTCGAGAGG
CTTTGACCTGGATGTTGACCACCCGACGGATCTGATCGCAGATGCTCTCG
TGGAAACGGGTGCACCAGAGGAGGTGTGCCCTGACCCTAACCCTAACCCT
GACCATAACCACAAGCCCTCTCATCGTGACTCCAACCCCCCTCCCAGTCA
CTCTCCAGGCCAATCTCTCCTCTTGATATCCTCTCTTTTATTCACATGGG
TTGTCGTGGACTTTCTATGCCGTGCCCCTTGCCTCCCCTGTTGGCATCTG
TTAGCTACATCTCCCCTGAAGTCCTACTGCAGAACAGCGGTACACCTGAT
TTGGAAGTTGGCACCTCTGGAACTGGGCACCTCCTTAGAGCTTAGAGCTG
ATGATGGCTGAGATGAGACCCACTGTCTGGCCTGCAAGGTTCTTCTCCCC
GCTGTATGTACTGTATGTTGCGGGAGGATGTTGCCTGATGTTGGATCGAT
CTTTCCATGTGGAGGCGTATCTGACCCCAGGGATGCTTGATTCCCTGGGA
TCAAGGGTGTCATTGTCATGCTGGAGACTGCAACAGCTCAGTGGAGCGCT
TTGCTGACCCGTGATGGCCGGCAGACTTACCCTTGCGAGGCTTGTCGTGA
CTTTGTGATGTCGTCCTTTGGAAAAATAAGAAACAAATTACACCCTGGTG
CAAGGGTACTTACTGAACGGTAGAATATCACTCATATATCTATGTATGTA
TGTATGCATGCATATTCGGCTGTGCTTCACCAAATATCCTTTCCAAGAAG
TAGATCTTGAAGGGTGGGTCACTTTTCGTGGTTGGCATTCAAGAGTCAGC
CCTGCTGGGGACAGCACAAGCATGTCATCACAAAAGGACCCTGGACCCCC
CCCCCTCCACGAGCAGATTTTCGTTTTTTTGAGCACCCCTCTGTCTTCGA
TCTGCACCAGGTGGGGGAAGCTGTGTTCAAGGTCCTCTGCTCACGCACCT
ACACTGACTCTACCCTATGTCTCAAGGATGACCCAGAGGGGTGTCTGTGT
GCAGCCTTCCTGTATGCTGTTCAGGTGAACTGA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig979:22988..25170-

>mRNA_D-mesarthrocarpus_Contig979.6.1 ID=mRNA_D-mesarthrocarpus_Contig979.6.1|Name=mRNA_D-mesarthrocarpus_Contig979.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=561bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig979:22988..25170- (Discosporangium mesarthrocarpum MT17_79)
CTGAAGTATGACGGGTGTGGGCTCATTCGCATCGTTGGAAGGGCTCTGGG
GCTGCCGGTGAAAGCAATGCTCACCACATTCCATCTCTTCCACCACTACC
AGTGGTGTGCCCGGTCAGTCAGGAGCCTTGACTTCCCAAGGGAGGACCTG
CCCGCGGTGTGCCTGGCCTGTCTCCTTGCAGCATCCAAGGCTGAGGACAT
CAACATCAAGATACGGATGCTCATGCCCGTGCTTGAGCGCCTTCAGCCCA
ACCTCCCCCCGTTCGAGAAGATCATACTACCCCTGGGGAAGATGCCCACC
AAGCAGGAGGCAAGCCTTATCTATTCCGTGGCAGACTACGAGTACAAGGT
GCAGCTCTCGAGAGGCTTTGACCTGGATGTTGACCACCCGACGGATCTGA
TCGCAGATGCTCTCGTGGAAACGGGTGCACCAGAGGAGGTGGGGGAAGCT
GTGTTCAAGGTCCTCTGCTCACGCACCTACACTGACTCTACCCTATGTCT
CAAGGATGACCCAGAGGGGTGTCTGTGTGCAGCCTTCCTGTATGCTGTTC
AGGTGAACTGA
back to top